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Unraveling the genomic mosaic of a ubiquitous genus of marine cyanobacteria
Alexis Dufresne, Martin Ostrowski, David J Scanlan, Laurence Garczarek, Sophie Mazard, Brian P Palenik, Ian T Paulsen, Nicole Tandeau de Marsac, Patrick Wincker, Carole Dossat, Steve Ferriera, Justin Johnson, Anton F Post, Wolfgang R Hess, Frédéric Partensky
Genome Biol. 2008; 9(5): R90. Published online 2008 May 28. doi: 10.1186/gb-2008-9-5-r90
PMCID:
PMC2441476
Abstract Full Text PDF–1.8M Supplementary Material

Is Cited by the Following 39 Articles in this Archive:

Mining Genomes of Marine Cyanobacteria for Elements of Zinc Homeostasis
James P. Barnett, Andrew Millard, Amira Z. Ksibe, David J. Scanlan, Ralf Schmid, Claudia Andrea Blindauer
Front Microbiol. 2012; 3: 142. Published online 2012 April 11. doi: 10.3389/fmicb.2012.00142
PMCID:
PMC3323870
Abstract Full Text PDF–2.6M Supplementary Material
Iron Utilization in Marine Cyanobacteria and Eukaryotic Algae
Joe Morrissey, Chris Bowler
Front Microbiol. 2012; 3: 43. Prepublished online 2011 November 25. Published online 2012 March 7. doi: 10.3389/fmicb.2012.00043
PMCID:
PMC3296057
Abstract Full Text PDF–1.0M
Rapid diversification of coevolving marine Synechococcus and a virus
Marcia F. Marston, Francis J. Pierciey, Jr., Alicia Shepard, Gary Gearin, Ji Qi, Chandri Yandava, Stephan C. Schuster, Matthew R. Henn, Jennifer B. H. Martiny
Proc Natl Acad Sci U S A. 2012 March 20; 109(12): 4544–4549. Published online 2012 March 2. doi: 10.1073/pnas.1120310109
PMCID:
PMC3311363
Free in PMC on 2012/09/20
The Infinitely Many Genes Model for the Distributed Genome of Bacteria
Franz Baumdicker, Wolfgang R. Hess, Peter Pfaffelhuber
Genome Biol Evol. 2012; 4(4): 443–456. Published online 2012 February 21. doi: 10.1093/gbe/evs016
PMCID:
PMC3342869
Abstract Full Text PDF–331K
A Novel Cyanophage with a Cyanobacterial Nonbleaching Protein A Gene in the Genome
E-Bin Gao, Jian-Fang Gui, Qi-Ya Zhang
J Virol. 2012 January; 86(1): 236–245. doi: 10.1128/JVI.06282-11
PMCID:
PMC3255931
Free in PMC on 2012/07/01
Two Strains of Crocosphaera watsonii with Highly Conserved Genomes are Distinguished by Strain-Specific Features
Shellie R. Bench, Irina N. Ilikchyan, H. James Tripp, Jonathan P. Zehr
Front Microbiol. 2011; 2: 261. Prepublished online 2011 October 23. Published online 2011 December 29. doi: 10.3389/fmicb.2011.00261
PMCID:
PMC3247675
Abstract Full Text PDF–2.2M Supplementary Material
ProPortal: a resource for integrated systems biology of Prochlorococcus and its phage
Libusha Kelly, Katherine H. Huang, Huiming Ding, Sallie W. Chisholm
Nucleic Acids Res. 2012 January; 40(D1): D632–D640. Published online 2011 November 17. doi: 10.1093/nar/gkr1022
PMCID:
PMC3245167
Abstract Full Text PDF–5.4M
Random Addition Concatenation Analysis: A Novel Approach to the Exploration of Phylogenomic Signal Reveals Strong Agreement between Core and Shell Genomic Partitions in the Cyanobacteria
Apurva Narechania, Richard H. Baker, Ryan Sit, Sergios-Orestis Kolokotronis, Rob DeSalle, Paul J. Planet
Genome Biol Evol. 2012; 4(1): 30–43. Published online 2011 November 16. doi: 10.1093/gbe/evr121
PMCID:
PMC3267395
Abstract Full Text PDF–562K
Evolution of a divinyl chlorophyll-based photosystem in Prochlorococcus
Hisashi Ito, Ayumi Tanaka
Proc Natl Acad Sci U S A. 2011 November 1; 108(44): 18014–18019. Published online 2011 October 17. doi: 10.1073/pnas.1107590108
PMCID:
PMC3207665
Abstract Full Text PDF–425K Supplementary Material
Seasonal Synechococcus and Thaumarchaeal population dynamics examined with high resolution with remote in situ instrumentation
Julie C Robidart, Christina M Preston, Ryan W Paerl, Kendra A Turk, Annika C Mosier, Christopher A Francis, Christopher A Scholin, Jonathan P Zehr
ISME J. 2012 March; 6(3): 513–523. Published online 2011 October 6. doi: 10.1038/ismej.2011.127
PMCID:
PMC3280143
Free in PMC on 2013/03/01
Novel lineages of Prochlorococcus and Synechococcus in the global oceans
Sijun Huang, Steven W Wilhelm, H Rodger Harvey, Karen Taylor, Nianzhi Jiao, Feng Chen
ISME J. 2012 February; 6(2): 285–297. Published online 2011 September 29. doi: 10.1038/ismej.2011.106
PMCID:
PMC3260499
Free in PMC on 2013/02/01
Selection in Coastal Synechococcus (Cyanobacteria) Populations Evaluated from Environmental Metagenomes
Vera Tai, Art F. Y. Poon, Ian T. Paulsen, Brian Palenik
PLoS One. 2011; 6(9): e24249. Published online 2011 September 9. doi: 10.1371/journal.pone.0024249
PMCID:
PMC3170327
Abstract Full Text PDF–881K Supplementary Material
Physiological Differentiation within a Single-Species Biofilm Fueled by Serpentinization
William J. Brazelton, Mausmi P. Mehta, Deborah S. Kelley, John A. Baross
mBio. 2011 Jul-Aug; 2(4): e00127-11. Published online 2011 July 26. doi: 10.1128/mBio.00127-11
PMCID:
PMC3143844
Abstract Full Text PDF–1.2M Supplementary Material
Long Term Seasonal Dynamics of Synechococcus Population Structure in the Gulf of Aqaba, Northern Red Sea
Anton F. Post, Sigrid Penno, Keren Zandbank, Adina Paytan, Susan M. Huse, David Mark Welch
Front Microbiol. 2011; 2: 131. Published online 2011 June 20. doi: 10.3389/fmicb.2011.00131
PMCID:
PMC3122069
Abstract Full Text PDF–1.2M
Light History Influences the Response of the Marine Cyanobacterium Synechococcus sp. WH7803 to Oxidative Stress
Nicolas Blot, Daniella Mella-Flores, Christophe Six, Gildas Le Corguillé, Christophe Boutte, Anne Peyrat, Annabelle Monnier, Morgane Ratin, Priscillia Gourvil, Douglas A. Campbell, Laurence Garczarek
Plant Physiol. 2011 August; 156(4): 1934–1954. Published online 2011 June 13. doi: 10.1104/pp.111.174714
PMCID:
PMC3149967
Abstract Full Text PDF–1.3M
Variability in Protist Grazing and Growth on Different Marine Synechococcus Isolates
Jude K. Apple, Suzanne L. Strom, Brian Palenik, Bianca Brahamsha
Appl Environ Microbiol. 2011 May; 77(9): 3074–3084. doi: 10.1128/AEM.02241-10
PMCID:
PMC3126417
Abstract Full Text PDF–805K
Genome Reduction by Deletion of Paralogs in the Marine Cyanobacterium Prochlorococcus
Haiwei Luo, Robert Friedman, Jijun Tang, Austin L. Hughes
Mol Biol Evol. 2011 October; 28(10): 2751–2760. Published online 2011 April 29. doi: 10.1093/molbev/msr081
PMCID:
PMC3203624
Free in PMC on 2012/10/01
Specialization versus adaptation: two strategies employed by cyanophages to enhance their translation efficiencies
Keren Limor-Waisberg, Asaf Carmi, Avigdor Scherz, Yitzhak Pilpel, Itay Furman
Nucleic Acids Res. 2011 August; 39(14): 6016–6028. Published online 2011 April 5. doi: 10.1093/nar/gkr169
PMCID:
PMC3152331
Abstract Full Text PDF–5.7M Supplementary Material
Differential Distributions of Synechococcus Subgroups Across the California Current System
Ryan W. Paerl, Kenneth S. Johnson, Rory M. Welsh, Alexandra Z. Worden, Francisco P. Chavez, Jonathan P. Zehr
Front Microbiol. 2011; 2: 59. Prepublished online 2011 February 10. Published online 2011 April 4. doi: 10.3389/fmicb.2011.00059
PMCID:
PMC3153035
Abstract Full Text PDF–3.0M
The origin of multicellularity in cyanobacteria
Bettina E Schirrmeister, Alexandre Antonelli, Homayoun C Bagheri
BMC Evol Biol. 2011; 11: 45. Published online 2011 February 14. doi: 10.1186/1471-2148-11-45
PMCID:
PMC3271361
Abstract Full Text PDF–1.7M Supplementary Material
Blueprint for a minimal photoautotrophic cell: conserved and variable genes in Synechococcus elongatus PCC 7942
Luis Delaye, Carmen M González-Domenech, María P Garcillán-Barcia, Juli Peretó, Fernando de la Cruz, Andrés Moya
BMC Genomics. 2011; 12: 25. Published online 2011 January 12. doi: 10.1186/1471-2164-12-25
PMCID:
PMC3025956
Abstract Full Text PDF–1.9M Supplementary Material
Phages in nature
Martha RJ Clokie, Andrew D Millard, Andrey V Letarov, Shaun Heaphy
Bacteriophage. 2011 Jan-Feb; 1(1): 31–45. doi: 10.4161/bact.1.1.14942
PMCID:
PMC3109452
Abstract Full Text PDF–4.8M
Networks of Gene Sharing among 329 Proteobacterial Genomes Reveal Differences in Lateral Gene Transfer Frequency at Different Phylogenetic Depths
Thorsten Kloesges, Ovidiu Popa, William Martin, Tal Dagan
Mol Biol Evol. 2011 February; 28(2): 1057–1074. Published online 2010 November 8. doi: 10.1093/molbev/msq297
PMCID:
PMC3021791
Abstract Full Text PDF–1.8M Supplementary Material
Characterization of Cyanate Metabolism in Marine Synechococcus and Prochlorococcus spp.
Nina A. Kamennaya, Anton F. Post
Appl Environ Microbiol. 2011 January; 77(1): 291–301. Published online 2010 November 5. doi: 10.1128/AEM.01272-10
PMCID:
PMC3019706
Abstract Full Text PDF–3.0M
Genomic analysis of oceanic cyanobacterial myoviruses compared with T4-like myoviruses from diverse hosts and environments
Matthew B Sullivan, Katherine H Huang, Julio C Ignacio-Espinoza, Aaron M Berlin, Libusha Kelly, Peter R Weigele, Alicia S DeFrancesco, Suzanne E Kern, Luke R Thompson, Sarah Young, Chandri Yandava, Ross Fu, Bryan Krastins, Michael Chase, David Sarracino, Marcia S Osburne, Matthew R Henn, Sallie W Chisholm
Environ Microbiol. 2010 November; 12(11): 3035–3056. doi: 10.1111/j.1462-2920.2010.02280.x
PMCID:
PMC3037559
Abstract Full Text PDF–1.7M Supplementary Material
T4 genes in the marine ecosystem: studies of the T4-like cyanophages and their role in marine ecology
Martha RJ Clokie, Andrew D Millard, Nicholas H Mann
Virol J. 2010; 7: 291. Published online 2010 October 28. doi: 10.1186/1743-422X-7-291
PMCID:
PMC2984593
Abstract Full Text PDF–1.7M
Evolution of Bacterial Phosphoglycerate Mutases: Non-Homologous Isofunctional Enzymes Undergoing Gene Losses, Gains and Lateral Transfers
Jeremy M. Foster, Paul J. Davis, Sylvine Raverdy, Marion H. Sibley, Elisabeth A. Raleigh, Sanjay Kumar, Clotilde K. S. Carlow
PLoS One. 2010; 5(10): e13576. Published online 2010 October 26. doi: 10.1371/journal.pone.0013576
PMCID:
PMC2964296
Abstract Full Text PDF–2.8M Supplementary Material
The core genome of the anaerobic oral pathogenic bacterium Porphyromonas gingivalis
Jorg Brunner, Floyd RA Wittink, Martijs J Jonker, Mark de Jong, Timo M Breit, Marja L Laine, Johannes J de Soet, Wim Crielaard
BMC Microbiol. 2010; 10: 252. Published online 2010 September 29. doi: 10.1186/1471-2180-10-252
PMCID:
PMC2955634
Abstract Full Text PDF–1.2M Supplementary Material
Characterization of Prochlorococcus clades from iron-depleted oceanic regions
Douglas B. Rusch, Adam C. Martiny, Christopher L. Dupont, Aaron L. Halpern, J. Craig Venter
Proc Natl Acad Sci U S A. 2010 September 14; 107(37): 16184–16189. Published online 2010 August 23. doi: 10.1073/pnas.1009513107
PMCID:
PMC2941326
Abstract Full Text PDF–930K Supplementary Material
Understanding the evolutionary relationships and major traits of Bacillus through comparative genomics
Luis David Alcaraz, Gabriel Moreno-Hagelsieb, Luis E Eguiarte, Valeria Souza, Luis Herrera-Estrella, Gabriela Olmedo
BMC Genomics. 2010; 11: 332. Published online 2010 May 26. doi: 10.1186/1471-2164-11-332
PMCID:
PMC2890564
Abstract Full Text PDF–1.7M Supplementary Material
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