My NCBISign In
Calling on a million minds for community annotation in WikiProteins
Barend Mons, Michael Ashburner, Christine Chichester, Erik van Mulligen, Marc Weeber, Johan den Dunnen, Gert-Jan van Ommen, Mark Musen, Matthew Cockerill, Henning Hermjakob, Albert Mons, Abel Packer, Roberto Pacheco, Suzanna Lewis, Alfred Berkeley, William Melton, Nickolas Barris, Jimmy Wales, Gerard Meijssen, Erik Moeller, Peter Jan Roes, Katy Borner, Amos Bairoch
Genome Biol. 2008; 9(5): R89. Published online 2008 May 28. doi: 10.1186/gb-2008-9-5-r89
PMCID:
PMC2441475
Abstract Full Text PDF–1.5M Supplementary Material

Is Cited by the Following 38 Articles in this Archive:

Linking genes to diseases with a SNPedia-Gene Wiki mashup
Benjamin M Good, Erik L Clarke, Salvatore Loguercio, Andrew I Su
J Biomed Semantics. 2012; 3(Suppl 1): S6. Published online 2012 April 24. doi: 10.1186/2041-1480-3-S1-S6
PMCID:
PMC3337266
Abstract Full Text PDF–735K
Mining the Gene Wiki for functional genomic knowledge
Benjamin M Good, Douglas G Howe, Simon M Lin, Warren A Kibbe, Andrew I Su
BMC Genomics. 2011; 12: 603. Published online 2011 December 13. doi: 10.1186/1471-2164-12-603
PMCID:
PMC3271090
Abstract Full Text PDF–2.8M Supplementary Material
Tools and collaborative environments for bioinformatics research
Paolo Romano, Rosalba Giugno, Alfredo Pulvirenti
Brief Bioinform. 2011 November; 12(6): 549–561. Published online 2011 October 7. doi: 10.1093/bib/bbr055
PMCID:
PMC3220874
Abstract Full Text PDF–625K
Knowledge sharing and collaboration in translational research, and the DC-THERA Directory
Andrea Splendiani, Michaela Gündel, Jonathan M. Austyn, Duccio Cavalieri, Ciro Scognamiglio, Marco Brandizi
Brief Bioinform. 2011 November; 12(6): 562–575. Published online 2011 October 3. doi: 10.1093/bib/bbr051
PMCID:
PMC3220873
Abstract Full Text PDF–697K
DAS Writeback: A Collaborative Annotation System
Gustavo A Salazar, Rafael C Jimenez, Alexander Garcia, Henning Hermjakob, Nicola Mulder, Edwin Blake
BMC Bioinformatics. 2011; 12: 143. Published online 2011 May 10. doi: 10.1186/1471-2105-12-143
PMCID:
PMC3115852
Abstract Full Text PDF–1013K Supplementary Material
Literature curation of protein interactions: measuring agreement across major public databases
Andrei L. Turinsky, Sabry Razick, Brian Turner, Ian M. Donaldson, Shoshana J. Wodak
Database (Oxford) 2010; 2010: baq026. Published online 2010 December 22. doi: 10.1093/database/baq026
PMCID:
PMC3011985
Abstract Full Text PDF–1.1M
GermOnline 4.0 is a genomics gateway for germline development, meiosis and the mitotic cell cycle
Aurélie Lardenois, Alexandre Gattiker, Olivier Collin, Frédéric Chalmel, Michael Primig
Database (Oxford) 2010; 2010: baq030. Published online 2010 December 10. doi: 10.1093/database/baq030
PMCID:
PMC3004465
Abstract Full Text PDF–848K
Current Trends and New Challenges of Databases and Web Applications for Systems Driven Biological Research
Pradeep Kumar Sreenivasaiah, Do Han Kim
Front Physiol. 2010; 1: 147. Prepublished online 2010 September 28. Published online 2010 December 3. doi: 10.3389/fphys.2010.00147
PMCID:
PMC3059952
Abstract Full Text PDF–468K
Ten Simple Rules for Editing Wikipedia
Darren W. Logan, Massimo Sandal, Paul P. Gardner, Magnus Manske, Alex Bateman
PLoS Comput Biol. 2010 September; 6(9): e1000941. Published online 2010 September 30. doi: 10.1371/journal.pcbi.1000941
PMCID:
PMC2947980
Full Text PDF–76K
Structured digital tables on the Semantic Web: toward a structured digital literature
Kei-Hoi Cheung, Matthias Samwald, Raymond K Auerbach, Mark B Gerstein
Mol Syst Biol. 2010; 6: 403. Published online 2010 August 24. doi: 10.1038/msb.2010.45
PMCID:
PMC2950080
Abstract Full Text PDF–1.9M
TOPSAN: a collaborative annotation environment for structural genomics
Dana Weekes, S Sri Krishna, Constantina Bakolitsa, Ian A Wilson, Adam Godzik, John Wooley
BMC Bioinformatics. 2010; 11: 426. Published online 2010 August 17. doi: 10.1186/1471-2105-11-426
PMCID:
PMC2936398
Abstract Full Text PDF–2.1M
PDBWiki: added value through community annotation of the Protein Data Bank
Henning Stehr, Jose M. Duarte, Michael Lappe, Jong Bhak, Dan M. Bolser
Database (Oxford) 2010; 2010: baq009. Published online 2010 April 16. doi: 10.1093/database/baq009
PMCID:
PMC2911844
Abstract Full Text PDF–408K
What is a Wiki, and How Can it be Used in Resident Education?
Marc D. Kohli, John K. Bradshaw
J Digit Imaging. 2011 February; 24(1): 170–175. Published online 2010 April 13. doi: 10.1007/s10278-010-9292-7
PMCID:
PMC3046790
Abstract Full Text PDF–367K
Collaboratively charting the gene-to-phenotype network of human congenital heart defects
Roland Barriot, Jeroen Breckpot, Bernard Thienpont, Sylvain Brohée, Steven Van Vooren, Bert Coessens, Leon-Charles Tranchevent, Peter Van Loo, Marc Gewillig, Koenraad Devriendt, Yves Moreau
Genome Med. 2010; 2(3): 16. Published online 2010 March 1. doi: 10.1186/gm137
PMCID:
PMC2873794
Abstract Full Text PDF–1007K Supplementary Material
The Gene Wiki: community intelligence applied to human gene annotation
Jon W. Huss, III, Pierre Lindenbaum, Michael Martone, Donabel Roberts, Angel Pizarro, Faramarz Valafar, John B. Hogenesch, Andrew I. Su
Nucleic Acids Res. 2010 January; 38(Database issue): D633–D639. Published online 2010 January. doi: 10.1093/nar/gkp760
PMCID:
PMC2808918
Abstract Full Text PDF–1.8M
BioGPS: an extensible and customizable portal for querying and organizing gene annotation resources
Chunlei Wu, Camilo Orozco, Jason Boyer, Marc Leglise, James Goodale, Serge Batalov, Christopher L Hodge, James Haase, Jeff Janes, Jon W Huss, III, Andrew I Su
Genome Biol. 2009; 10(11): R130. Published online 2009 November 17. doi: 10.1186/gb-2009-10-11-r130
PMCID:
PMC3091323
Abstract Full Text PDF–1.1M Supplementary Material
Enhancing navigation in biomedical databases by community voting and database-driven text classification
Timo Duchrow, Timur Shtatland, Daniel Guettler, Misha Pivovarov, Stefan Kramer, Ralph Weissleder
BMC Bioinformatics. 2009; 10: 317. Published online 2009 October 3. doi: 10.1186/1471-2105-10-317
PMCID:
PMC2768718
Abstract Full Text PDF–1.0M
A community-curated consensual annotation that is continuously updated: the Bacillus subtilis centred wiki SubtiWiki
Lope A. Flórez, Sebastian F. Roppel, Arne G. Schmeisky, Christoph R. Lammers, Jörg Stülke
Database (Oxford) 2009; 2009: bap012. Published online 2009 September 17. doi: 10.1093/database/bap012
PMCID:
PMC2790307
Abstract Full Text PDF–776K
Automated seeding of specialised wiki knowledgebases with BioKb
Jonathan R Manning, Ann Hedley, John J Mullins, Donald R Dunbar
BMC Bioinformatics. 2009; 10: 291. Published online 2009 September 16. doi: 10.1186/1471-2105-10-291
PMCID:
PMC2753848
Abstract Full Text PDF–590K
Seeking Health Information Online: Does Wikipedia Matter?
Michaël R. Laurent, Tim J. Vickers
J Am Med Inform Assoc. 2009 Jul-Aug; 16(4): 471–479. doi: 10.1197/jamia.M3059
PMCID:
PMC2705249
Abstract Full Text PDF–501K
Alignment of the UMLS semantic network with BioTop: methodology and assessment
Stefan Schulz, Elena Beisswanger, László van den Hoek, Olivier Bodenreider, Erik M. van Mulligen
Bioinformatics. 2009 June 15; 25(12): i69–i76. Published online 2009 May 27. doi: 10.1093/bioinformatics/btp194
PMCID:
PMC2687948
Abstract Full Text PDF–144K
Infrastructure for the life sciences: design and implementation of the UniProt website
Eric Jain, Amos Bairoch, Severine Duvaud, Isabelle Phan, Nicole Redaschi, Baris E Suzek, Maria J Martin, Peter McGarvey, Elisabeth Gasteiger
BMC Bioinformatics. 2009; 10: 136. Published online 2009 May 8. doi: 10.1186/1471-2105-10-136
PMCID:
PMC2686714
Abstract Full Text PDF–2.9M
Science wikinomics. Mass networking through the web creates new forms of scientific collaboration
Andrea Rinaldi
EMBO Rep. 2009 May; 10(5): 439–443. doi: 10.1038/embor.2009.79
Correction in:
EMBO Rep. 2009 July; 10(7): 797.
PMCID:
PMC2680888
Full Text PDF–315K Correction
Life Science Research and Drug Discovery at the Turn of the 21st Century: The Experience of SwissBioGrid
Matthijs den Besten, Arthur J Thomas, Ralph Schroeder
J Biomed Discov Collab. 2009; 4: 5. Published online 2009 April 22.
PMCID:
PMC2850249
Abstract Full Text PDF–202K
Collaborative text-annotation resource for disease-centered relation extraction from biomedical text
C. Cano, T. Monaghan, A. Blanco, D.P. Wall, L. Peshkin
J Biomed Inform. Author manuscript; available in PMC 2010 October 1.
Published in final edited form as: J Biomed Inform. 2009 October; 42(5): 967–977. Published online 2009 February 14. doi: 10.1016/j.jbi.2009.02.001
PMCID:
PMC2757509
Abstract Full Text PDF–2.0M
Systems medicine: the future of medical genomics and healthcare
Charles Auffray, Zhu Chen, Leroy Hood
Genome Med. 2009; 1(1): 2. Published online 2009 January 20. doi: 10.1186/gm2
PMCID:
PMC2651587
Abstract Full Text PDF–154K
dictyBase—a Dictyostelium bioinformatics resource update
Petra Fey, Pascale Gaudet, Tomaz Curk, Blaz Zupan, Eric M. Just, Siddhartha Basu, Sohel N. Merchant, Yulia A. Bushmanova, Gad Shaulsky, Warren A. Kibbe, Rex L. Chisholm
Nucleic Acids Res. 2009 January; 37(Database issue): D515–D519. Published online 2009 January. doi: 10.1093/nar/gkn844
PMCID:
PMC2686522
Abstract Full Text PDF–3.7M
HAMAP: a database of completely sequenced microbial proteome sets and manually curated microbial protein families in UniProtKB/Swiss-Prot
Tania Lima, Andrea H. Auchincloss, Elisabeth Coudert, Guillaume Keller, Karine Michoud, Catherine Rivoire, Virginie Bulliard, Edouard de Castro, Corinne Lachaize, Delphine Baratin, Isabelle Phan, Lydie Bougueleret, Amos Bairoch
Nucleic Acids Res. 2009 January; 37(Database issue): D471–D478. Published online 2009 January. doi: 10.1093/nar/gkn661
PMCID:
PMC2686602
Abstract Full Text PDF–2.9M
The RNA WikiProject: Community annotation of RNA families
Jennifer Daub, Paul P. Gardner, John Tate, Daniel Ramsköld, Magnus Manske, William G. Scott, Zasha Weinberg, Sam Griffiths-Jones, Alex Bateman
RNA. 2008 December; 14(12): 2462–2464. doi: 10.1261/rna.1200508
PMCID:
PMC2590952
Abstract Full Text PDF–58K
Metagenome Annotation Using a Distributed Grid of Undergraduate Students
Pascal Hingamp, Céline Brochier, Emmanuel Talla, Daniel Gautheret, Denis Thieffry, Carl Herrmann
PLoS Biol. 2008 November; 6(11): e296. Published online 2008 November 25. doi: 10.1371/journal.pbio.0060296
PMCID:
PMC2586363
Full Text PDF–605K Supplementary Material
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