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CpG island density and its correlations with genomic features in mammalian genomes
Leng Han, Bing Su, Wen-Hsiung Li, Zhongming Zhao
Genome Biol. 2008; 9(5): R79. Published online 2008 May 13. doi: 10.1186/gb-2008-9-5-r79
PMCID:
PMC2441465
Abstract Full Text PDF–418K Supplementary Material

Is Cited by the Following 11 Articles in this Archive:

Long-Range Autocorrelations of CpG Islands in the Human Genome
Benjamin Koester, Thomas J. Rea, Alan R. Templeton, Alexander S. Szalay, Charles F. Sing
PLoS One. 2012; 7(1): e29889. Published online 2012 January 11. doi: 10.1371/journal.pone.0029889
PMCID:
PMC3256200
Abstract Full Text PDF–384K Supplementary Material
Functional complementation between transcriptional methylation regulation and post-transcriptional microRNA regulation in the human genome
Zhixi Su, Junfeng Xia, Zhongming Zhao
BMC Genomics. 2011; 12(Suppl 5): S15. Published online 2011 December 23. doi: 10.1186/1471-2164-12-S5-S15
PMCID:
PMC3287497
Abstract Full Text PDF–847K Supplementary Material
Analysis of CpG methylation sites and CGI among human papillomavirus DNA genomes
Silvia C Galván, Martha Martínez-Salazar, Víctor M Galván, Rocío Méndez, Gibran T Díaz-Contreras, Moisés Alvarado-Hermida, Rogelio Alcántara-Silva, Alejandro García-Carrancá
BMC Genomics. 2011; 12: 580. Published online 2011 November 25. doi: 10.1186/1471-2164-12-580
PMCID:
PMC3293833
Abstract Full Text PDF–438K Supplementary Material
The evolution of transcription-associated biases of mutations across vertebrates
Paz Polak, Robert Querfurth, Peter F Arndt
BMC Evol Biol. 2010; 10: 187. Published online 2010 June 18. doi: 10.1186/1471-2148-10-187
PMCID:
PMC2927911
Abstract Full Text PDF–1.1M Supplementary Material
Intergenic, gene terminal, and intragenic CpG islands in the human genome
Yulia A Medvedeva, Marina V Fridman, Nina J Oparina, Dmitry B Malko, Ekaterina O Ermakova, Ivan V Kulakovskiy, Andreas Heinzel, Vsevolod J Makeev
BMC Genomics. 2010; 11: 48. Published online 2010 January 19. doi: 10.1186/1471-2164-11-48
PMCID:
PMC2817693
Abstract Full Text PDF–2.0M Supplementary Material
CpG_MI: a novel approach for identifying functional CpG islands in mammalian genomes
Jianzhong Su, Yan Zhang, Jie Lv, Hongbo Liu, Xiaoyan Tang, Fang Wang, Yunfeng Qi, Yujia Feng, Xia Li
Nucleic Acids Res. 2010 January; 38(1): e6. Published online 2010 January. doi: 10.1093/nar/gkp882
PMCID:
PMC2800233
Abstract Full Text PDF–4.7M Supplementary Material
Gene conversion causing human inherited disease: evidence for involvement of non-B-DNA-forming sequences and recombination-promoting motifs in DNA breakage and repair
Nadia Chuzhanova, Jian-Min Chen, Albino Bacolla, George P. Patrinos, Claude Férec, Robert D. Wells, David N. Cooper
Hum Mutat. Author manuscript; available in PMC 2010 August 1.
Published in final edited form as: Hum Mutat. 2009 August; 30(8): 1189–1198. doi: 10.1002/humu.21020
PMCID:
PMC2779867
Abstract Full Text PDF–388K Supplementary Material
Contrast features of CpG islands in the promoter and other regions in the dog genome
Leng Han, Zhongming Zhao
Genomics. Author manuscript; available in PMC 2010 August 1.
Published in final edited form as: Genomics. 2009 August; 94(2): 117–124. Published online 2009 May 3. doi: 10.1016/j.ygeno.2009.04.007
PMCID:
PMC2729786
Abstract Full Text PDF–736K Supplementary Material
Transcription Initiation Activity Sets Replication Origin Efficiency in Mammalian Cells
Joana Sequeira-Mendes, Ramón Díaz-Uriarte, Anwyn Apedaile, Derek Huntley, Neil Brockdorff, María Gómez
PLoS Genet. 2009 April; 5(4): e1000446. Published online 2009 April 10. doi: 10.1371/journal.pgen.1000446
PMCID:
PMC2661365
Abstract Full Text PDF–1.4M Supplementary Material
CpG islands: algorithms and applications in methylation studies
Zhongming Zhao, Leng Han
Biochem Biophys Res Commun. Author manuscript; available in PMC 2010 May 15.
Published in final edited form as: Biochem Biophys Res Commun. 2009 May 15; 382(4): 643–645. Published online 2009 March 18. doi: 10.1016/j.bbrc.2009.03.076
PMCID:
PMC2679166
Abstract Full Text PDF–321K
CpG islands or CpG clusters: how to identify functional GC-rich regions in a genome?
Leng Han, Zhongming Zhao
BMC Bioinformatics. 2009; 10: 65. Published online 2009 February 20. doi: 10.1186/1471-2105-10-65
PMCID:
PMC2652441
Abstract Full Text PDF–291K Supplementary Material
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