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The genome sequence of the model ascomycete fungus Podospora anserina
Eric Espagne, Olivier Lespinet, Fabienne Malagnac, Corinne Da Silva, Olivier Jaillon, Betina M Porcel, Arnaud Couloux, Jean-Marc Aury, Béatrice Ségurens, Julie Poulain, Véronique Anthouard, Sandrine Grossetete, Hamid Khalili, Evelyne Coppin, Michelle Déquard-Chablat, Marguerite Picard, Véronique Contamine, Sylvie Arnaise, Anne Bourdais, Véronique Berteaux-Lecellier, Daniel Gautheret, Ronald P de Vries, Evy Battaglia, Pedro M Coutinho, Etienne GJ Danchin, Bernard Henrissat, Riyad EL Khoury, Annie Sainsard-Chanet, Antoine Boivin, Bérangère Pinan-Lucarré, Carole H Sellem, Robert Debuchy, Patrick Wincker, Jean Weissenbach, Philippe Silar
Genome Biol. 2008; 9(5): R77. Published online 2008 May 6. doi: 10.1186/gb-2008-9-5-r77
PMCID:
PMC2441463
Abstract Full Text PDF–2.6M Supplementary Material
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 Is Cited by the Following 33 Articles in this Archive:
LTR Retrotransposons in Fungi
Anna Muszewska, Marta Hoffman-Sommer, Marcin Grynberg
PLoS One. 2011; 6(12): e29425. Published online 2011 December 29. doi: 10.1371/journal.pone.0029425
PMCID:
PMC3248453
Abstract Full Text PDF–801K Supplementary Material
Genome Characterization of the Oleaginous Fungus Mortierella alpina
Lei Wang, Wei Chen, Yun Feng, Yan Ren, Zhennan Gu, Haiqin Chen, Hongchao Wang, Michael J. Thomas, Baixi Zhang, Isabelle M. Berquin, Yang Li, Jiansheng Wu, Huanxin Zhang, Yuanda Song, Xiang Liu, James S. Norris, Suriguga Wang, Peng Du, Junguo Shen, Na Wang, Yanlin Yang, Wei Wang, Lu Feng, Colin Ratledge, Hao Zhang, Yong Q. Chen
PLoS One. 2011; 6(12): e28319. Published online 2011 December 8. doi: 10.1371/journal.pone.0028319
PMCID:
PMC3234268
Abstract Full Text PDF–1.3M Supplementary Material
Array CGH Phylogeny: How accurate are Comparative Genomic Hybridization-based trees?
Luz B Gilbert, Takao Kasuga, N Louise Glass, John W Taylor
BMC Genomics. 2011; 12: 487. Published online 2011 October 6. doi: 10.1186/1471-2164-12-487
PMCID:
PMC3206521
Abstract Full Text PDF–484K Supplementary Material
PaCATB, a secreted catalase protecting Podospora anserina against exogenous oxidative stress
Sandra Zintel, Dominik Bernhardt, Adelina Rogowska-Wrzesinska, Heinz D. Osiewacz
Aging (Albany NY) 2011 August; 3(8): 768–781. Published online 2011 August 14.
PMCID:
PMC3184978
Abstract Full Text PDF–998K
Comparative Genomics Yields Insights into Niche Adaptation of Plant Vascular Wilt Pathogens
Steven J. Klosterman, Krishna V. Subbarao, Seogchan Kang, Paola Veronese, Scott E. Gold, Bart P. H. J. Thomma, Zehua Chen, Bernard Henrissat, Yong-Hwan Lee, Jongsun Park, Maria D. Garcia-Pedrajas, Dez J. Barbara, Amy Anchieta, Ronnie de Jonge, Parthasarathy Santhanam, Karunakaran Maruthachalam, Zahi Atallah, Stefan G. Amyotte, Zahi Paz, Patrik Inderbitzin, Ryan J. Hayes, David I. Heiman, Sarah Young, Qiandong Zeng, Reinhard Engels, James Galagan, Christina A. Cuomo, Katherine F. Dobinson, Li-Jun Ma
PLoS Pathog. 2011 July; 7(7): e1002137. Published online 2011 July 28. doi: 10.1371/journal.ppat.1002137
PMCID:
PMC3145793
Abstract Full Text PDF–1.5M Supplementary Material
Fungal enzyme sets for plant polysaccharide degradation
Joost van den Brink, Ronald P. de Vries
Appl Microbiol Biotechnol. 2011 September; 91(6): 1477–1492. Published online 2011 July 23. doi: 10.1007/s00253-011-3473-2
PMCID:
PMC3160556
Abstract Full Text PDF–435K
Genome-Wide Gene Expression Profiling of Fertilization Competent Mycelium in Opposite Mating Types in the Heterothallic Fungus Podospora anserina
Frédérique Bidard, Jinane Aït Benkhali, Evelyne Coppin, Sandrine Imbeaud, Pierre Grognet, Hervé Delacroix, Robert Debuchy
PLoS One. 2011; 6(6): e21476. Published online 2011 June 28. doi: 10.1371/journal.pone.0021476
PMCID:
PMC3125171
Abstract Full Text PDF–469K Supplementary Material
Secretome of the Coprophilous Fungus Doratomyces stemonitis C8, Isolated from Koala Feces
Robyn Peterson, Jasmine Grinyer, Helena Nevalainen
Appl Environ Microbiol. 2011 June; 77(11): 3793–3801. doi: 10.1128/AEM.00252-11
PMCID:
PMC3127613
Abstract Full Text PDF–458K Supplementary Material
Curation of characterized glycoside hydrolases of Fungal origin
Caitlin Murphy, Justin Powlowski, Min Wu, Greg Butler, Adrian Tsang
Database (Oxford) 2011; 2011: bar020. Published online 2011 May 26. doi: 10.1093/database/bar020
PMCID:
PMC3263737
Abstract Full Text PDF–324K
A novel mode of chromosomal evolution peculiar to filamentous Ascomycete fungi
James K Hane, Thierry Rouxel, Barbara J Howlett, Gert HJ Kema, Stephen B Goodwin, Richard P Oliver
Genome Biol. 2011; 12(5): R45. Published online 2011 May 24. doi: 10.1186/gb-2011-12-5-r45
PMCID:
PMC3219968
Abstract Full Text PDF–2.2M Supplementary Material
Evolution of Multicopper Oxidase Genes in Coprophilous and Non-Coprophilous Members of the Order Sordariales
Stefanie Pöggeler
Curr Genomics. 2011 April; 12(2): 95–103. doi: 10.2174/138920211795564368
PMCID:
PMC3129052
Abstract Full Text PDF–164K Supplementary Material
Effector diversification within compartments of the Leptosphaeria maculans genome affected by Repeat-Induced Point mutations
Thierry Rouxel, Jonathan Grandaubert, James K. Hane, Claire Hoede, Angela P. van de Wouw, Arnaud Couloux, Victoria Dominguez, Véronique Anthouard, Pascal Bally, Salim Bourras, Anton J. Cozijnsen, Lynda M. Ciuffetti, Alexandre Degrave, Azita Dilmaghani, Laurent Duret, Isabelle Fudal, Stephen B. Goodwin, Lilian Gout, Nicolas Glaser, Juliette Linglin, Gert H. J. Kema, Nicolas Lapalu, Christopher B. Lawrence, Kim May, Michel Meyer, Bénédicte Ollivier, Julie Poulain, Conrad L. Schoch, Adeline Simon, Joseph W. Spatafora, Anna Stachowiak, B. Gillian Turgeon, Brett M. Tyler, Delphine Vincent, Jean Weissenbach, Joëlle Amselem, Hadi Quesneville, Richard P. Oliver, Patrick Wincker, Marie-Hélène Balesdent, Barbara J. Howlett
Nat Commun. 2011 February 15; 2: 202. doi: 10.1038/ncomms1189
PMCID:
PMC3105345
Abstract Full Text PDF–960K Supplementary Material
Carbohydrate-active enzymes from the zygomycete fungus Rhizopus oryzae: a highly specialized approach to carbohydrate degradation depicted at genome level
Evy Battaglia, Isabelle Benoit, Joost van den Brink, Ad Wiebenga, Pedro M Coutinho, Bernard Henrissat, Ronald P de Vries
BMC Genomics. 2011; 12: 38. Published online 2011 January 17. doi: 10.1186/1471-2164-12-38
PMCID:
PMC3032700
Abstract Full Text PDF–1.4M Supplementary Material
Catalytic Properties and Classification of Cellobiose Dehydrogenases from Ascomycetes
Wolfgang Harreither, Christoph Sygmund, Manfred Augustin, Melanie Narciso, Mikhail L. Rabinovich, Lo Gorton, Dietmar Haltrich, Roland Ludwig
Appl Environ Microbiol. 2011 March; 77(5): 1804–1815. Published online 2011 January 7. doi: 10.1128/AEM.02052-10
PMCID:
PMC3067291
Abstract Full Text PDF–1.7M Supplementary Material
Modulation of the glyoxalase system in the aging model Podospora anserina: effects on growth and lifespan
Christian Q. Scheckhuber, Sandra J. Mack, Ingmar Strobel, Filomena Ricciardi, Suzana Gispert, Heinz D. Osiewacz
Aging (Albany NY) 2010 December; 2(12): 969–980. Published online 2010 December 30.
PMCID:
PMC3034185
Abstract Full Text PDF–1.9M
Evolution and Diversity of a Fungal Self/Nonself Recognition Locus
Charles Hall, Juliet Welch, David J. Kowbel, N. Louise Glass
PLoS One. 2010; 5(11): e14055. Published online 2010 November 19. doi: 10.1371/journal.pone.0014055
PMCID:
PMC2988816
Abstract Full Text PDF–2.6M Supplementary Material
Podospora anserina Hemicellulases Potentiate the Trichoderma reesei Secretome for Saccharification of Lignocellulosic Biomass
Marie Couturier, Mireille Haon, Pedro M. Coutinho, Bernard Henrissat, Laurence Lesage-Meessen, Jean-Guy Berrin
Appl Environ Microbiol. 2011 January; 77(1): 237–246. Published online 2010 October 29. doi: 10.1128/AEM.01761-10
PMCID:
PMC3019743
Abstract Full Text PDF–636K
Proteomics of industrial fungi: trends and insights for biotechnology
José Miguel P. Ferreira de Oliveira, Leo H. de Graaff
Appl Microbiol Biotechnol. 2011 January; 89(2): 225–237. Published online 2010 October 5. doi: 10.1007/s00253-010-2900-0
PMCID:
PMC3016146
Abstract Full Text PDF–475K
Genome sequence of the necrotrophic plant pathogen Pythium ultimum reveals original pathogenicity mechanisms and effector repertoire
C André Lévesque, Henk Brouwer, Liliana Cano, John P Hamilton, Carson Holt, Edgar Huitema, Sylvain Raffaele, Gregg P Robideau, Marco Thines, Joe Win, Marcelo M Zerillo, Gordon W Beakes, Jeffrey L Boore, Dana Busam, Bernard Dumas, Steve Ferriera, Susan I Fuerstenberg, Claire MM Gachon, Elodie Gaulin, Francine Govers, Laura Grenville-Briggs, Neil Horner, Jessica Hostetler, Rays HY Jiang, Justin Johnson, Theerapong Krajaejun, Haining Lin, Harold JG Meijer, Barry Moore, Paul Morris, Vipaporn Phuntmart, Daniela Puiu, Jyoti Shetty, Jason E Stajich, Sucheta Tripathy, Stephan Wawra, Pieter van West, Brett R Whitty, Pedro M Coutinho, Bernard Henrissat, Frank Martin, Paul D Thomas, Brett M Tyler, Ronald P De Vries, Sophien Kamoun, Mark Yandell, Ned Tisserat, C Robin Buell
Genome Biol. 2010; 11(7): R73. Published online 2010 July 13. doi: 10.1186/gb-2010-11-7-r73
PMCID:
PMC2926784
Abstract Full Text PDF–1.7M Supplementary Material
A general framework for optimization of probes for gene expression microarray and its application to the fungus Podospora anserina
Frédérique Bidard, Sandrine Imbeaud, Nancie Reymond, Olivier Lespinet, Philippe Silar, Corinne Clavé, Hervé Delacroix, Véronique Berteaux-Lecellier, Robert Debuchy
BMC Res Notes. 2010; 3: 171. Published online 2010 June 18. doi: 10.1186/1756-0500-3-171
PMCID:
PMC2908635
Abstract Full Text PDF–456K Supplementary Material
WD-repeat instability and diversification of the Podospora anserina hnwd non-self recognition gene family
Damien Chevanne, Sven J Saupe, Corinne Clavé, Mathieu Paoletti
BMC Evol Biol. 2010; 10: 134. Published online 2010 May 6. doi: 10.1186/1471-2148-10-134
PMCID:
PMC2873952
Abstract Full Text PDF–917K Supplementary Material
De novo Assembly of a 40 Mb Eukaryotic Genome from Short Sequence Reads: Sordaria macrospora, a Model Organism for Fungal Morphogenesis
Minou Nowrousian, Jason E. Stajich, Meiling Chu, Ines Engh, Eric Espagne, Karen Halliday, Jens Kamerewerd, Frank Kempken, Birgit Knab, Hsiao-Che Kuo, Heinz D. Osiewacz, Stefanie Pöggeler, Nick D. Read, Stephan Seiler, Kristina M. Smith, Denise Zickler, Ulrich Kück, Michael Freitag
PLoS Genet. 2010 April; 6(4): e1000891. Published online 2010 April 8. doi: 10.1371/journal.pgen.1000891
PMCID:
PMC2851567
Abstract Full Text PDF–1.0M Supplementary Material
Fungal Secretome Database: Integrated platform for annotation of fungal secretomes
Jaeyoung Choi, Jongsun Park, Donghan Kim, Kyongyong Jung, Seogchan Kang, Yong-Hwan Lee
BMC Genomics. 2010; 11: 105. Published online 2010 February 11. doi: 10.1186/1471-2164-11-105
PMCID:
PMC2836287
Abstract Full Text PDF–1.0M
Systems analysis of plant cell wall degradation by the model filamentous fungus Neurospora crassa
Chaoguang Tian, William T. Beeson, Anthony T. Iavarone, Jianping Sun, Michael A. Marletta, Jamie H. D. Cate, N. Louise Glass
Proc Natl Acad Sci U S A. 2009 December 29; 106(52): 22157–22162. Published online 2009 December 15. doi: 10.1073/pnas.0906810106
PMCID:
PMC2794032
Abstract Full Text PDF–883K Supplementary Material
Dancing genomes: fungal nuclear positioning
Amy Gladfelter, Judith Berman
Nat Rev Microbiol. Author manuscript; available in PMC 2010 June 1.
Published in final edited form as: Nat Rev Microbiol. 2009 December; 7(12): 875–886. Published online 2009 November 9. doi: 10.1038/nrmicro2249
PMCID:
PMC2794368
Abstract Full Text PDF–3.1M Supplementary Material
Suppression of Mitochondrial DNA Instability of Autosomal Dominant Forms of Progressive External Ophthalmoplegia-Associated ANT1 Mutations in Podospora anserina
Riyad El-Khoury, Annie Sainsard-Chanet
Genetics. 2009 November; 183(3): 861–871. doi: 10.1534/genetics.109.107813
PMCID:
PMC2778982
Abstract Full Text PDF–2.0M
An Acetyltransferase Conferring Tolerance to Toxic Aromatic Amine Chemicals: MOLECULAR AND FUNCTIONAL STUDIES
Marta Martins, Fernando Rodrigues-Lima, Julien Dairou, Aazdine Lamouri, Fabienne Malagnac, Philippe Silar, Jean-Marie Dupret
J Biol Chem. 2009 July 10; 284(28): 18726–18733. Published online 2009 May 5. doi: 10.1074/jbc.M109.015230
PMCID:
PMC2707229
Abstract Full Text Supplementary Material
Mutations in Two Zinc-Cluster Proteins Activate Alternative Respiratory and Gluconeogenic Pathways and Restore Senescence in Long-Lived Respiratory Mutants of Podospora anserina
Carole H. Sellem, Elodie Bovier, Séverine Lorin, Annie Sainsard-Chanet
Genetics. 2009 May; 182(1): 69–78. doi: 10.1534/genetics.109.100834
PMCID:
PMC2674842
Abstract Full Text PDF–8.0M
Insect-Specific Polyketide Synthases (PKSs), Potential PKS-Nonribosomal Peptide Synthetase Hybrids, and Novel PKS Clades in Tropical Fungi
Alongkorn Amnuaykanjanasin, Suranat Phonghanpot, Nattapong Sengpanich, Supapon Cheevadhanarak, Morakot Tanticharoen
Appl Environ Microbiol. 2009 June; 75(11): 3721–3732. Published online 2009 April 3. doi: 10.1128/AEM.02744-08
PMCID:
PMC2687288
Abstract Full Text PDF–767K Supplementary Material
SNUGB: a versatile genome browser supporting comparative and functional fungal genomics
Kyongyong Jung, Jongsun Park, Jaeyoung Choi, Bongsoo Park, Seungill Kim, Kyohun Ahn, Jaehyuk Choi, Doil Choi, Seogchan Kang, Yong-Hwan Lee
BMC Genomics. 2008; 9: 586. Published online 2008 December 4. doi: 10.1186/1471-2164-9-586
PMCID:
PMC2649115
Abstract Full Text PDF–1.9M
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