My NCBISign In
Splign: algorithms for computing spliced alignments with identification of paralogs
Yuri Kapustin, Alexander Souvorov, Tatiana Tatusova, David Lipman
Biol Direct. 2008; 3: 20. Published online 2008 May 21. doi: 10.1186/1745-6150-3-20
PMCID:
PMC2440734
Abstract Full Text PDF–731K

Is Cited by the Following 24 Articles in this Archive:

Regional Selection Acting on the OFD1 Gene Family
Ti-Cheng Chang, Jessica L. Klabnik, Wan-Sheng Liu
PLoS One. 2011; 6(10): e26195. Published online 2011 October 14. doi: 10.1371/journal.pone.0026195
PMCID:
PMC3193505
Abstract Full Text PDF–557K Supplementary Material
TILLING - a shortcut in functional genomics
Marzena Kurowska, Agata Daszkowska-Golec, Damian Gruszka, Marek Marzec, Miriam Szurman, Iwona Szarejko, Miroslaw Maluszynski
J Appl Genet. 2011 November; 52(4): 371–390. Published online 2011 September 13. doi: 10.1007/s13353-011-0061-1
PMCID:
PMC3189332
Abstract Full Text PDF–606K
miRTar: an integrated system for identifying miRNA-target interactions in human
Justin Bo-Kai Hsu, Chih-Min Chiu, Sheng-Da Hsu, Wei-Yun Huang, Chia-Hung Chien, Tzong-Yi Lee, Hsien-Da Huang
BMC Bioinformatics. 2011; 12: 300. Published online 2011 July 26. doi: 10.1186/1471-2105-12-300
PMCID:
PMC3162936
Abstract Full Text PDF–1.7M Supplementary Material
Cryptic splice sites and split genes
Yuri Kapustin, Elcie Chan, Rupa Sarkar, Frederick Wong, Igor Vorechovsky, Robert M. Winston, Tatiana Tatusova, Nick J. Dibb
Nucleic Acids Res. 2011 August; 39(14): 5837–5844. Published online 2011 April 5. doi: 10.1093/nar/gkr203
PMCID:
PMC3152350
Abstract Full Text PDF–1.6M Supplementary Material
The Expansion of the PRAME Gene Family in Eutheria
Ti-Cheng Chang, Yang Yang, Hiroshi Yasue, Arvind K. Bharti, Ernest F. Retzel, Wan-Sheng Liu
PLoS One. 2011; 6(2): e16867. Published online 2011 February 10. doi: 10.1371/journal.pone.0016867
PMCID:
PMC3037382
Abstract Full Text PDF–1.4M Supplementary Material
Comparative analysis of information contents relevant to recognition of introns in many species
Hiroaki Iwata, Osamu Gotoh
BMC Genomics. 2011; 12: 45. Published online 2011 January 19. doi: 10.1186/1471-2164-12-45
PMCID:
PMC3033335
Abstract Full Text PDF–1.3M Supplementary Material
ZNF280BY and ZNF280AY: autosome derived Y-chromosome gene families in Bovidae
Yang Yang, Ti-Cheng Chang, Hiroshi Yasue, Arvind K Bharti, Ernest F Retzel, Wan-Sheng Liu
BMC Genomics. 2011; 12: 13. Published online 2011 January 7. doi: 10.1186/1471-2164-12-13
PMCID:
PMC3032696
Abstract Full Text PDF–1.4M Supplementary Material
Database resources of the National Center for Biotechnology Information
Eric W. Sayers, Tanya Barrett, Dennis A. Benson, Evan Bolton, Stephen H. Bryant, Kathi Canese, Vyacheslav Chetvernin, Deanna M. Church, Michael DiCuccio, Scott Federhen, Michael Feolo, Ian M. Fingerman, Lewis Y. Geer, Wolfgang Helmberg, Yuri Kapustin, David Landsman, David J. Lipman, Zhiyong Lu, Thomas L. Madden, Tom Madej, Donna R. Maglott, Aron Marchler-Bauer, Vadim Miller, Ilene Mizrachi, James Ostell, Anna Panchenko, Lon Phan, Kim D. Pruitt, Gregory D. Schuler, Edwin Sequeira, Stephen T. Sherry, Martin Shumway, Karl Sirotkin, Douglas Slotta, Alexandre Souvorov, Grigory Starchenko, Tatiana A. Tatusova, Lukas Wagner, Yanli Wang, W. John Wilbur, Eugene Yaschenko, Jian Ye
Nucleic Acids Res. 2011 January; 39(Database issue): D38–D51. Published online 2010 November 20. doi: 10.1093/nar/gkq1172
PMCID:
PMC3013733
Abstract Full Text PDF–136K
RoBuST: an integrated genomics resource for the root and bulb crop families Apiaceae and Alliaceae
Ashwini Bhasi, Doug Senalik, Philipp W Simon, Brajendra Kumar, Vinu Manikandan, Philge Philip, Periannan Senapathy
BMC Plant Biol. 2010; 10: 161. Published online 2010 August 6. doi: 10.1186/1471-2229-10-161
PMCID:
PMC3017783
Abstract Full Text PDF–774K
Complete HOX cluster characterization of the coelacanth provides further evidence for slow evolution of its genome
Chris T. Amemiya, Thomas P. Powers, Sonja J. Prohaska, Jane Grimwood, Jeremy Schmutz, Mark Dickson, Tsutomu Miyake, Michael A. Schoenborn, Richard M. Myers, Francis H. Ruddle, Peter F. Stadler
Proc Natl Acad Sci U S A. 2010 February 23; 107(8): 3622–3627. Published online 2010 February 5. doi: 10.1073/pnas.0914312107
PMCID:
PMC2840454
Abstract Full Text PDF–515K Supplementary Material
Identification and characterization of Nasonia Pax genes
R. G. Keller, C. Desplan, M. I. Rosenberg
Insect Mol Biol. Author manuscript; available in PMC 2010 April 9.
Published in final edited form as: Insect Mol Biol. 2010 February; 19(Suppl 1): 109–120. doi: 10.1111/j.1365-2583.2009.00921.x
PMCID:
PMC2852259
Abstract Full Text PDF–519K Supplementary Material
Database resources of the National Center for Biotechnology Information
Eric W. Sayers, Tanya Barrett, Dennis A. Benson, Evan Bolton, Stephen H. Bryant, Kathi Canese, Vyacheslav Chetvernin, Deanna M. Church, Michael DiCuccio, Scott Federhen, Michael Feolo, Lewis Y. Geer, Wolfgang Helmberg, Yuri Kapustin, David Landsman, David J. Lipman, Zhiyong Lu, Thomas L. Madden, Tom Madej, Donna R. Maglott, Aron Marchler-Bauer, Vadim Miller, Ilene Mizrachi, James Ostell, Anna Panchenko, Kim D. Pruitt, Gregory D. Schuler, Edwin Sequeira, Stephen T. Sherry, Martin Shumway, Karl Sirotkin, Douglas Slotta, Alexandre Souvorov, Grigory Starchenko, Tatiana A. Tatusova, Lukas Wagner, Yanli Wang, W. John Wilbur, Eugene Yaschenko, Jian Ye
Nucleic Acids Res. 2010 January; 38(Database issue): D5–D16. Published online 2010 January. doi: 10.1093/nar/gkp967
PMCID:
PMC2808881
Abstract Full Text PDF–130K
BeetleBase in 2010: revisions to provide comprehensive genomic information for Tribolium castaneum
Hee Shin Kim, Terence Murphy, Jing Xia, Doina Caragea, Yoonseong Park, Richard W. Beeman, Marcé D. Lorenzen, Stephen Butcher, J. Robert Manak, Susan J. Brown
Nucleic Acids Res. 2010 January; 38(Database issue): D437–D442. Published online 2010 January. doi: 10.1093/nar/gkp807
PMCID:
PMC2808946
Abstract Full Text PDF–6.9M
Alternative splicing and gene duplication differentially shaped the regulation of isochorismate synthase in Populus and Arabidopsis
Yinan Yuan, Jeng-Der Chung, Xueyan Fu, Virgil E. Johnson, Priya Ranjan, Sarah L. Booth, Scott A. Harding, Chung-Jui Tsai
Proc Natl Acad Sci U S A. 2009 December 22; 106(51): 22020–22025. Published online 2009 December 8. doi: 10.1073/pnas.0906869106
PMCID:
PMC2790362
Abstract Full Text PDF–1.6M Supplementary Material
Evaluating annotations of an Agilent expression chip suggests that many features cannot be interpreted
E Michael Gertz, Kundan Sengupta, Michael J Difilippantonio, Thomas Ried, Alejandro A Schäffer
BMC Genomics. 2009; 10: 566. Published online 2009 November 30. doi: 10.1186/1471-2164-10-566
PMCID:
PMC2791105
Abstract Full Text PDF–282K Supplementary Material
Proteolytic activation and function of the cytokine Spätzle in innate immune response of a lepidopteran insect, Manduca sexta
Chunju An, Haobo Jiang, Michael R. Kanost
FEBS J. Author manuscript; available in PMC 2010 January 13.
Published in final edited form as: FEBS J. 2010 January; 277(1): 148–162. Published online 2009 November 26. doi: 10.1111/j.1742-4658.2009.07465.x
PMCID:
PMC2805777
Abstract Full Text PDF–1.9M Supplementary Material
Human Aldehyde Dehydrogenase Genes: Alternatively-Spliced Transcriptional Variants and Their Suggested Nomenclature
William J. Black, Dimitrios Stagos, Satori A. Marchitti, Daniel W. Nebert, Keith F. Tipton, Amos Bairoch, Vasilis Vasiliou
Pharmacogenet Genomics. Author manuscript; available in PMC 2012 May 20.
Published in final edited form as: Pharmacogenet Genomics. 2009 November; 19(11): 893–902. doi: 10.1097/FPC.0b013e3283329023
PMCID:
PMC3356695
Abstract Full Text PDF–619K
Whole genome duplications and expansion of the vertebrate GATA transcription factor gene family
William Q Gillis, John St John, Bruce Bowerman, Stephan Q Schneider
BMC Evol Biol. 2009; 9: 207. Published online 2009 August 20. doi: 10.1186/1471-2148-9-207
PMCID:
PMC2857956
Abstract Full Text PDF–1.1M Supplementary Material
Prediction of novel families of enzymes involved in oxidative and other complex modifications of bases in nucleic acids
Lakshminarayan M. Iyer, Mamta Tahiliani, Anjana Rao, L. Aravind
Cell Cycle. Author manuscript; available in PMC 2010 December 1.
Published in final edited form as: Cell Cycle. 2009 June 1; 8(11): 1698–1710. Published online 2009 June 27.
PMCID:
PMC2995806
Abstract Full Text PDF–2.0M Supplementary Material
Pairagon: a highly accurate, HMM-based cDNA-to-genome aligner
David V. Lu, Randall H. Brown, Manimozhiyan Arumugam, Michael R. Brent
Bioinformatics. 2009 July 1; 25(13): 1587–1593. Published online 2009 May 4. doi: 10.1093/bioinformatics/btp273
PMCID:
PMC2732315
Abstract Full Text PDF–408K Supplementary Material
Database resources of the National Center for Biotechnology Information
Eric W. Sayers, Tanya Barrett, Dennis A. Benson, Stephen H. Bryant, Kathi Canese, Vyacheslav Chetvernin, Deanna M. Church, Michael DiCuccio, Ron Edgar, Scott Federhen, Michael Feolo, Lewis Y. Geer, Wolfgang Helmberg, Yuri Kapustin, David Landsman, David J. Lipman, Thomas L. Madden, Donna R. Maglott, Vadim Miller, Ilene Mizrachi, James Ostell, Kim D. Pruitt, Gregory D. Schuler, Edwin Sequeira, Stephen T. Sherry, Martin Shumway, Karl Sirotkin, Alexandre Souvorov, Grigory Starchenko, Tatiana A. Tatusova, Lukas Wagner, Eugene Yaschenko, Jian Ye
Nucleic Acids Res. 2009 January; 37(Database issue): D5–D15. Published online 2009 January. doi: 10.1093/nar/gkn741
Correction in:
Nucleic Acids Res. 2009 May; 37(9): 3124.
PMCID:
PMC2686545
Abstract Full Text PDF–123K Correction
NCBI Reference Sequences: current status, policy and new initiatives
Kim D. Pruitt, Tatiana Tatusova, William Klimke, Donna R. Maglott
Nucleic Acids Res. 2009 January; 37(Database issue): D32–D36. Published online 2009 January. doi: 10.1093/nar/gkn721
PMCID:
PMC2686572
Abstract Full Text PDF–85K
Genomic complexity of the variable region-containing chitin-binding proteins in amphioxus
Larry J Dishaw, M Gail Mueller, Natasha Gwatney, John P Cannon, Robert N Haire, Ronda T Litman, Chris T Amemiya, Tatsuya Ota, Lee Rowen, Gustavo Glusman, Gary W Litman
BMC Genet. 2008; 9: 78. Published online 2008 December 1. doi: 10.1186/1471-2156-9-78
PMCID:
PMC2632668
Abstract Full Text PDF–1.0M Supplementary Material
Scipio: Using protein sequences to determine the precise exon/intron structures of genes and their orthologs in closely related species
Oliver Keller, Florian Odronitz, Mario Stanke, Martin Kollmar, Stephan Waack
BMC Bioinformatics. 2008; 9: 278. Published online 2008 June 13. doi: 10.1186/1471-2105-9-278
PMCID:
PMC2442105
Abstract Full Text PDF–522K Supplementary Material
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