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Functionally important segments in proteins dissected using Gene Ontology and geometric clustering of peptide fragments
Karuppasamy Manikandan, Debnath Pal, Suryanarayanarao Ramakumar, Nathan E Brener, Sitharama S Iyengar, Guna Seetharaman
Genome Biol. 2008; 9(3): R52. Published online 2008 March 10. doi: 10.1186/gb-2008-9-3-r52
PMCID:
PMC2397504
Abstract Full Text PDF–3.5M Supplementary Material
 Is Cited by the Following 7 Articles in this Archive:
Dissecting protein loops with a statistical scalpel suggests a functional implication of some structural motifs
Leslie Regad, Juliette Martin, Anne-Claude Camproux
BMC Bioinformatics. 2011; 12: 247. Published online 2011 June 20. doi: 10.1186/1471-2105-12-247
PMCID:
PMC3158783
Abstract Full Text PDF–3.7M Supplementary Material
Detailed Analysis of Function Divergence in a Large and Diverse Domain Superfamily: Towards a Refined Protocol of Function Classification
Benoit H. Dessailly, Oliver C. Redfern, Alison L. Cuff, Christine A. Orengo
Structure. Author manuscript; available in PMC 2011 November 10.
Published in final edited form as: Structure. 2010 November 10; 18(11): 1522–1535. doi: 10.1016/j.str.2010.08.017
PMCID:
PMC3023962
Abstract Full Text PDF–1.2M Supplementary Material
FragKB: Structural and Literature Annotation Resource of Conserved Peptide Fragments and Residues
Ashish V. Tendulkar, Martin Krallinger, Victor de la Torre, Gonzalo López, Pramod P. Wangikar, Alfonso Valencia
PLoS One. 2010; 5(3): e9679. Published online 2010 March 18. doi: 10.1371/journal.pone.0009679
PMCID:
PMC2841175
Abstract Full Text PDF–487K Supplementary Material
Identification of recurring protein structure microenvironments and discovery of novel functional sites around CYS residues
Shirley Wu, Tianyun Liu, Russ B Altman
BMC Struct Biol. 2010; 10: 4. Published online 2010 February 2. doi: 10.1186/1472-6807-10-4
PMCID:
PMC2833161
Abstract Full Text PDF–2.8M Supplementary Material
An Atlas of the Speed of Copy Number Changes in Animal Gene Families and Its Implications
Deng Pan, Liqing Zhang
PLoS One. 2009; 4(10): e7342. Published online 2009 October 23. doi: 10.1371/journal.pone.0007342
PMCID:
PMC2761543
Abstract Full Text PDF–348K Supplementary Material
Exploiting Structural Classifications for Function Prediction: Towards a Domain Grammar for Protein Function
Benoît H. Dessailly, Oliver C. Redfern, Alison Cuff, Christine A. Orengo
Curr Opin Struct Biol. Author manuscript; available in PMC 2010 August 12.
Published in final edited form as: Curr Opin Struct Biol. 2009 June; 19(3): 349–356. Published online 2009 April 22. doi: 10.1016/j.sbi.2009.03.009
PMCID:
PMC2920418
Abstract Full Text PDF–2.3M
Is protein classification necessary? Towards alternative approaches to function annotation
Donald Petrey, Barry Honig
Curr Opin Struct Biol. Author manuscript; available in PMC 2009 December 1.
Published in final edited form as: Curr Opin Struct Biol. 2009 June; 19(3): 363–368. Published online 2009 March 5. doi: 10.1016/j.sbi.2009.02.001
PMCID:
PMC2745633
Abstract Full Text PDF–380K
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