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Cross-kingdom patterns of alternative splicing and splice recognition
Abigail M McGuire, Matthew D Pearson, Daniel E Neafsey, James E Galagan
Genome Biol. 2008; 9(3): R50. Published online 2008 March 5. doi: 10.1186/gb-2008-9-3-r50
PMCID:
PMC2397502
Abstract Full Text PDF–508K Supplementary Material

Is Cited by the Following 14 Articles in this Archive:

The importance of identifying alternative splicing in vertebrate genome annotation
Adam Frankish, Jonathan M. Mudge, Mark Thomas, Jennifer Harrow
Database (Oxford) 2012; 2012: bas014. Published online 2012 March 20. doi: 10.1093/database/bas014
PMCID:
PMC3308168
Abstract Full Text PDF–1.1M
Approaches to Fungal Genome Annotation
Brian J. Haas, Qiandong Zeng, Matthew D. Pearson, Christina A. Cuomo, Jennifer R. Wortman
Mycology. Author manuscript; available in PMC 2012 October 3.
Published in final edited form as: Mycology. 2011 October 3; 2(3): 118–141. doi: 10.1080/21501203.2011.606851
PMCID:
PMC3207268
Free in PMC on 2012/10/03
The Origins, Evolution, and Functional Potential of Alternative Splicing in Vertebrates
Jonathan M. Mudge, Adam Frankish, Julio Fernandez-Banet, Tyler Alioto, Thomas Derrien, Cédric Howald, Alexandre Reymond, Roderic Guigó, Tim Hubbard, Jennifer Harrow
Mol Biol Evol. 2011 October; 28(10): 2949–2959. Published online 2011 May 6. doi: 10.1093/molbev/msr127
PMCID:
PMC3176834
Abstract Full Text PDF–645K Supplementary Material
Genetic architecture of regulatory variation in Arabidopsis thaliana
Xu Zhang, Andrew J. Cal, Justin O. Borevitz
Genome Res. 2011 May; 21(5): 725–733. doi: 10.1101/gr.115337.110
PMCID:
PMC3083089
Abstract Full Text PDF–819K
Evolution of Exon-Intron Structure and Alternative Splicing
Tomasz E. Koralewski, Konstantin V. Krutovsky
PLoS One. 2011; 6(3): e18055. Published online 2011 March 25. doi: 10.1371/journal.pone.0018055
PMCID:
PMC3064661
Abstract Full Text PDF–450K Supplementary Material
Detection and analysis of alternative splicing in Yarrowia lipolytica reveal structural constraints facilitating nonsense-mediated decay of intron-retaining transcripts
Meryem Mekouar, Isabelle Blanc-Lenfle, Christophe Ozanne, Corinne Da Silva, Corinne Cruaud, Patrick Wincker, Claude Gaillardin, Cécile Neuvéglise
Genome Biol. 2010; 11(6): R65. Published online 2010 June 23. doi: 10.1186/gb-2010-11-6-r65
PMCID:
PMC2911113
Abstract Full Text PDF–1.3M Supplementary Material
Allelic Gene Structure Variations in Anopheles gambiae Mosquitoes
Jun Li, Jose M. C. Ribeiro, Guiyun Yan
PLoS One. 2010; 5(5): e10699. Published online 2010 May 19. doi: 10.1371/journal.pone.0010699
PMCID:
PMC2873427
Abstract Full Text PDF–388K
Structural basis of UGUA recognition by the Nudix protein CFIm25 and implications for a regulatory role in mRNA 3′ processing
Qin Yang, Gregory M. Gilmartin, Sylvie Doublié
Proc Natl Acad Sci U S A. 2010 June 1; 107(22): 10062–10067. Published online 2010 May 17. doi: 10.1073/pnas.1000848107
PMCID:
PMC2890493
Abstract Full Text PDF–1.8M Supplementary Material
Survey of the transcriptome of Aspergillus oryzae via massively parallel mRNA sequencing
Bin Wang, Guangwu Guo, Chao Wang, Ying Lin, Xiaoning Wang, Mouming Zhao, Yong Guo, Minghui He, Yong Zhang, Li Pan
Nucleic Acids Res. 2010 August; 38(15): 5075–5087. Published online 2010 April 14. doi: 10.1093/nar/gkq256
PMCID:
PMC2926611
Abstract Full Text PDF–14M Supplementary Material
Complex selection on 5′ splice sites in intron-rich organisms
Manuel Irimia, Scott William Roy, Daniel E. Neafsey, Josep F. Abril, Jordi Garcia-Fernandez, Eugene V. Koonin
Genome Res. 2009 November; 19(11): 2021–2027. doi: 10.1101/gr.089276.108
PMCID:
PMC2775602
Abstract Full Text PDF–515K
Large introns in relation to alternative splicing and gene evolution: a case study of Drosophila bruno-3
Nikolai P Kandul, Mohamed AF Noor
BMC Genet. 2009; 10: 67. Published online 2009 October 19. doi: 10.1186/1471-2156-10-67
PMCID:
PMC2767349
Abstract Full Text PDF–1.4M Supplementary Material
Intronization, de-intronization and intron sliding are rare in Cryptococcus
Scott W Roy
BMC Evol Biol. 2009; 9: 192. Published online 2009 August 7. doi: 10.1186/1471-2148-9-192
PMCID:
PMC2740785
Abstract Full Text PDF–282K
Comparative analysis indicates that alternative splicing in plants has a limited role in functional expansion of the proteome
Edouard I Severing, Aalt DJ van Dijk, Willem J Stiekema, Roeland CHJ van Ham
BMC Genomics. 2009; 10: 154. Published online 2009 April 9. doi: 10.1186/1471-2164-10-154
PMCID:
PMC2674458
Abstract Full Text PDF–371K Supplementary Material
Exon definition as a potential negative force against intron losses in evolution
Deng-Ke Niu
Biol Direct. 2008; 3: 46. Published online 2008 November 13. doi: 10.1186/1745-6150-3-46
PMCID:
PMC2614967
Abstract Full Text PDF–265K Supplementary Material
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