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Evolutionary rates and patterns for human transcription factor binding sites derived from repetitive DNA
Nalini Polavarapu, Leonardo Mariño-Ramírez, David Landsman, John F McDonald, I King Jordan
BMC Genomics. 2008; 9: 226. Published online 2008 May 17. doi: 10.1186/1471-2164-9-226
PMCID:
PMC2397414
Abstract Full Text PDF–547K

Is Cited by the Following 10 Articles in this Archive:

Heat shock factor binding in Alu repeats expands its involvement in stress through an antisense mechanism
Rajesh Pandey, Amit K Mandal, Vineet Jha, Mitali Mukerji
Genome Biol. 2011; 12(11): R117. Published online 2011 November 23. doi: 10.1186/gb-2011-12-11-r117
PMCID:
PMC3334603
Abstract Full Text PDF–1.2M Supplementary Material
Genome-wide identification of conserved regulatory function in diverged sequences
Leila Taher, David M. McGaughey, Samantha Maragh, Ivy Aneas, Seneca L. Bessling, Webb Miller, Marcelo A. Nobrega, Andrew S. McCallion, Ivan Ovcharenko
Genome Res. 2011 July; 21(7): 1139–1149. doi: 10.1101/gr.119016.110
PMCID:
PMC3129256
Abstract Full Text PDF–645K
Effect of the Transposable Element Environment of Human Genes on Gene Length and Expression
Daudi Jjingo, Ahsan Huda, Madhumati Gundapuneni, Leonardo Mariño-Ramírez, I. King Jordan
Genome Biol Evol. 2011; 3: 259–271. Published online 2011 February 28. doi: 10.1093/gbe/evr015
PMCID:
PMC3070429
Abstract Full Text PDF–1.6M
Sequence composition similarities with the 7SL RNA are highly predictive of functional genomic features
Yanick Paquet, Alan Anderson
Nucleic Acids Res. 2010 August; 38(15): 4907–4916. Published online 2010 April 14. doi: 10.1093/nar/gkq234
PMCID:
PMC2926601
Abstract Full Text PDF–6.1M Supplementary Material
Foxa1 Functions as a Pioneer Transcription Factor at Transposable Elements to Activate Afp during Differentiation of Embryonic Stem Cells
Joseph H. Taube, Kendra Allton, Stephen A. Duncan, Lanlan Shen, Michelle Craig Barton
J Biol Chem. 2010 May 21; 285(21): 16135–16144. Published online 2010 March 26. doi: 10.1074/jbc.M109.088096
PMCID:
PMC2871482
Abstract Full Text Supplementary Material
A c-Myc regulatory subnetwork from human transposable element sequences
Jianrong Wang, Nathan J. Bowen, Leonardo Mariño-Ramírez, I. King Jordan
Mol Biosyst. Author manuscript; available in PMC 2010 April 7.
Published in final edited form as: Mol Biosyst. 2009 December; 5(12): 1831–1839. Published online 2009 July 21. doi: 10.1039/B908494k
PMCID:
PMC2850603
Abstract Full Text PDF–1.3M Supplementary Material
Organization and evolution of two SIDER retroposon subfamilies and their impact on the Leishmania genome
Martin Smith, Frédéric Bringaud, Barbara Papadopoulou
BMC Genomics. 2009; 10: 240. Published online 2009 May 22. doi: 10.1186/1471-2164-10-240
PMCID:
PMC2689281
Abstract Full Text PDF–3.2M Supplementary Material
Darwinian evolution in the light of genomics
Eugene V. Koonin
Nucleic Acids Res. 2009 March; 37(4): 1011–1034. Published online 2009 March. doi: 10.1093/nar/gkp089
PMCID:
PMC2651812
Abstract Full Text PDF–3.8M
Genomic complexity of the variable region-containing chitin-binding proteins in amphioxus
Larry J Dishaw, M Gail Mueller, Natasha Gwatney, John P Cannon, Robert N Haire, Ronda T Litman, Chris T Amemiya, Tatsuya Ota, Lee Rowen, Gustavo Glusman, Gary W Litman
BMC Genet. 2008; 9: 78. Published online 2008 December 1. doi: 10.1186/1471-2156-9-78
PMCID:
PMC2632668
Abstract Full Text PDF–1.0M Supplementary Material
'Systems toxicology' approach identifies coordinated metabolic responses to copper in a terrestrial non-model invertebrate, the earthworm Lumbricus rubellus
Jacob G Bundy, Jasmin K Sidhu, Faisal Rana, David J Spurgeon, Claus Svendsen, Jodie F Wren, Stephen R Stürzenbaum, A John Morgan, Peter Kille
BMC Biol. 2008; 6: 25. Published online 2008 June 3. doi: 10.1186/1741-7007-6-25
PMCID:
PMC2424032
Abstract Full Text PDF–1.9M Supplementary Material
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