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The SeqFEATURE library of 3D functional site models: comparison to existing methods and applications to protein function annotation
Shirley Wu, Mike P Liang, Russ B Altman
Genome Biol. 2008; 9(1): R8. Published online 2008 January 16. doi: 10.1186/gb-2008-9-1-r8
PMCID:
PMC2395245
Abstract Full Text PDF–1.4M

Is Cited by the Following 8 Articles in this Archive:

Using Multiple Microenvironments to Find Similar Ligand-Binding Sites: Application to Kinase Inhibitor Binding
Tianyun Liu, Russ B. Altman
PLoS Comput Biol. 2011 December; 7(12): e1002326. Published online 2011 December 29. doi: 10.1371/journal.pcbi.1002326
PMCID:
PMC3248393
Abstract Full Text PDF–2.9M Supplementary Material
Surface-Based Protein Binding Pocket Similarity
Russell Spitzer, Ann E. Cleves, Ajay N. Jain
Proteins. Author manuscript; available in PMC 2012 September 1.
Published in final edited form as: Proteins. 2011 September; 79(9): 2746–2763. Published online 2011 July 18. doi: 10.1002/prot.23103
PMCID:
PMC3155014
Free in PMC on 2012/09/01
Remote thioredoxin recognition using evolutionary conservation and structural dynamics
Grace W. Tang, Russ B. Altman
Structure. Author manuscript; available in PMC 2012 April 13.
Published in final edited form as: Structure. 2011 April 13; 19(4): 461–470. doi: 10.1016/j.str.2011.02.007
PMCID:
PMC3075543
Abstract Full Text PDF–1.1M Supplementary Material
Structure-based kernels for the prediction of catalytic residues and their involvement in human inherited disease
Fuxiao Xin, Steven Myers, Yong Fuga Li, David N. Cooper, Sean D. Mooney, Predrag Radivojac
Bioinformatics. 2010 August 15; 26(16): 1975–1982. Published online 2010 June 15. doi: 10.1093/bioinformatics/btq319
PMCID:
PMC2916715
Abstract Full Text PDF–447K Supplementary Material
Fast and automated functional classification with MED-SuMo: An application on purine-binding proteins
Olivia Doppelt-Azeroual, François Delfaud, Fabrice Moriaud, Alexandre G de Brevern
Protein Sci. 2010 April; 19(4): 847–867. Published online 2010 February 16. doi: 10.1002/pro.364
PMCID:
PMC2867024
Abstract Full Text PDF–1.5M
Identification of recurring protein structure microenvironments and discovery of novel functional sites around CYS residues
Shirley Wu, Tianyun Liu, Russ B Altman
BMC Struct Biol. 2010; 10: 4. Published online 2010 February 2. doi: 10.1186/1472-6807-10-4
PMCID:
PMC2833161
Abstract Full Text PDF–2.8M Supplementary Material
Analysis of HSP90-related folds with MED-SuMo classification approach
Olivia Doppelt-Azeroual, Fabrice Moriaud, François Delfaud, Alexandre G de Brevern
Drug Des Devel Ther. 2009; 3: 59–72. Published online 2009 September 21.
PMCID:
PMC2769237
Abstract Full Text PDF–3.6M Supplementary Material
The FEATURE framework for protein function annotation: modeling new functions, improving performance, and extending to novel applications
Inbal Halperin, Dariya S Glazer, Shirley Wu, Russ B Altman
BMC Genomics. 2008; 9(Suppl 2): S2. Published online 2008 September 16. doi: 10.1186/1471-2164-9-S2-S2
PMCID:
PMC2559884
Abstract Full Text PDF–1.6M
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