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Estimation and correction of non-specific binding in a large-scale spike-in experiment
Eugene F Schuster, Eric Blanc, Linda Partridge, Janet M Thornton
Genome Biol. 2007; 8(6): R126. Published online 2007 June 26. doi: 10.1186/gb-2007-8-6-r126
PMCID:
PMC2394775
Abstract Full Text PDF–1.5M Supplementary Material
 Is Cited by the Following 8 Articles in this Archive:
Highly Tissue Specific Expression of Sphinx Supports Its Male Courtship Related Role in Drosophila melanogaster
Ying Chen, Hongzheng Dai, Sidi Chen, Luoying Zhang, Manyuan Long
PLoS One. 2011; 6(4): e18853. Published online 2011 April 26. doi: 10.1371/journal.pone.0018853
PMCID:
PMC3082539
Abstract Full Text PDF–762K Supplementary Material
Preferred analysis methods for Affymetrix GeneChips. II. An expanded, balanced, wholly-defined spike-in dataset
Qianqian Zhu, Jeffrey C Miecznikowski, Marc S Halfon
BMC Bioinformatics. 2010; 11: 285. Published online 2010 May 27. doi: 10.1186/1471-2105-11-285
PMCID:
PMC2897828
Abstract Full Text PDF–5.1M Supplementary Material
Consistent annotation of gene expression arrays
Benoît Ballester, Nathan Johnson, Glenn Proctor, Paul Flicek
BMC Genomics. 2010; 11: 294. Published online 2010 May 11. doi: 10.1186/1471-2164-11-294
PMCID:
PMC2894801
Abstract Full Text PDF–1.3M Supplementary Material
A competitive hybridization model predicts probe signal intensity on high density DNA microarrays
Shuzhao Li, Alex Pozhitkov, Marius Brouwer
Nucleic Acids Res. 2008 November; 36(20): 6585–6591. Published online 2008 November. doi: 10.1093/nar/gkn740
PMCID:
PMC2582621
Abstract Full Text PDF–1.8M
Background correction using dinucleotide affinities improves the performance of GCRMA
Raad Z Gharaibeh, Anthony A Fodor, Cynthia J Gibas
BMC Bioinformatics. 2008; 9: 452. Published online 2008 October 23. doi: 10.1186/1471-2105-9-452
PMCID:
PMC2579310
Abstract Full Text PDF–454K Supplementary Material
A comprehensive re-analysis of the Golden Spike data: Towards a benchmark for differential expression methods
Richard D Pearson
BMC Bioinformatics. 2008; 9: 164. Published online 2008 March 26. doi: 10.1186/1471-2105-9-164
PMCID:
PMC2324099
Abstract Full Text PDF–473K Supplementary Material
Clustering of Genetically Defined Allele Classes in the Caenorhabditis elegans DAF-2 Insulin/IGF-1 Receptor
Dhaval S. Patel, Acely Garza-Garcia, Manoj Nanji, Joshua J. McElwee, Daniel Ackerman, Paul C. Driscoll, David Gems
Genetics. 2008 February; 178(2): 931–946. doi: 10.1534/genetics.107.070813
PMCID:
PMC2248335
Abstract Full Text PDF–1.0M
Correcting for sequence biases in present/absent calls
Eugene F Schuster, Eric Blanc, Linda Partridge, Janet M Thornton
Genome Biol. 2007; 8(6): R125. Published online 2007 June 26. doi: 10.1186/gb-2007-8-6-r125
PMCID:
PMC2394774
Abstract Full Text PDF–1.2M Supplementary Material
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