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Measuring the accuracy of genome-size multiple alignments
Amol Prakash, Martin Tompa
Genome Biol. 2007; 8(6): R124. Published online 2007 June 26. doi: 10.1186/gb-2007-8-6-r124
PMCID:
PMC2394773
Abstract Full Text PDF–374K
 Is Cited by the Following 8 Articles in this Archive:
PSAR: measuring multiple sequence alignment reliability by probabilistic sampling
Jaebum Kim, Jian Ma
Nucleic Acids Res. 2011 August; 39(15): 6359–6368. Published online 2011 May 14. doi: 10.1093/nar/gkr334
PMCID:
PMC3159474
Abstract Full Text PDF–1.4M Supplementary Material
Robust and accurate prediction of noncoding RNAs from aligned sequences
Yutaka Saito, Kengo Sato, Yasubumi Sakakibara
BMC Bioinformatics. 2010; 11(Suppl 7): S3. Published online 2010 October 15. doi: 10.1186/1471-2105-11-S7-S3
PMCID:
PMC2957686
Abstract Full Text PDF–1.3M Supplementary Material
progressiveMauve: Multiple Genome Alignment with Gene Gain, Loss and Rearrangement
Aaron E. Darling, Bob Mau, Nicole T. Perna
PLoS One. 2010; 5(6): e11147. Published online 2010 June 25. doi: 10.1371/journal.pone.0011147
PMCID:
PMC2892488
Abstract Full Text PDF–1.3M Supplementary Material
Conservation of Human Microsatellites across 450 Million Years of Evolution
Emmanuel Buschiazzo, Neil J. Gemmell
Genome Biol Evol. 2010; 2: 153–165. Published online 2010 February 8. doi: 10.1093/gbe/evq007
PMCID:
PMC2839350
Abstract Full Text PDF–539K Supplementary Material
Towards realistic benchmarks for multiple alignments of non-coding sequences
Jaebum Kim, Saurabh Sinha
BMC Bioinformatics. 2010; 11: 54. Published online 2010 January 26. doi: 10.1186/1471-2105-11-54
PMCID:
PMC2823711
Abstract Full Text PDF–2.3M Supplementary Material
Weak preservation of local neutral substitution rates across mammalian genomes
Hideo Imamura, John E Karro, Jeffrey H Chuang
BMC Evol Biol. 2009; 9: 89. Published online 2009 May 5. doi: 10.1186/1471-2148-9-89
PMCID:
PMC2689173
Abstract Full Text PDF–738K Supplementary Material
Uncertainty in homology inferences: Assessing and improving genomic sequence alignment
Gerton Lunter, Andrea Rocco, Naila Mimouni, Andreas Heger, Alexandre Caldeira, Jotun Hein
Genome Res. 2008 February; 18(2): 298–309. doi: 10.1101/gr.6725608
PMCID:
PMC2203628
Abstract Full Text PDF–813K
How accurately is ncRNA aligned within whole-genome multiple alignments?
Adrienne X Wang, Walter L Ruzzo, Martin Tompa
BMC Bioinformatics. 2007; 8: 417. Published online 2007 October 26. doi: 10.1186/1471-2105-8-417
PMCID:
PMC2206062
Abstract Full Text PDF–386K
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