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Evolutionary history and functional implications of protein domains and their combinations in eukaryotes
Masumi Itoh, Jose C Nacher, Kei-ichi Kuma, Susumu Goto, Minoru Kanehisa
Genome Biol. 2007; 8(6): R121. Published online 2007 June 25. doi: 10.1186/gb-2007-8-6-r121
PMCID:
PMC2394772
Abstract Full Text PDF–520K Supplementary Material

Is Cited by the Following 11 Articles in this Archive:

Evolutionary dynamics of protein domain architecture in plants
Xue-Cheng Zhang, Zheng Wang, Xinyan Zhang, Mi Ha Le, Jianguo Sun, Dong Xu, Jianlin Cheng, Gary Stacey
BMC Evol Biol. 2012; 12: 6. Published online 2012 January 17. doi: 10.1186/1471-2148-12-6
PMCID:
PMC3310802
Abstract Full Text PDF–457K Supplementary Material
The Dynamics and Evolutionary Potential of Domain Loss and Emergence
Andrew D. Moore, Erich Bornberg-Bauer
Mol Biol Evol. 2012 February; 29(2): 787–796. Published online 2011 October 19. doi: 10.1093/molbev/msr250
PMCID:
PMC3258042
Abstract Full Text PDF–587K Supplementary Material
Evolutionary versatility of eukaryotic protein domains revealed by their bigram networks
Xueying Xie, Jing Jin, Yongyi Mao
BMC Evol Biol. 2011; 11: 242. Published online 2011 August 18. doi: 10.1186/1471-2148-11-242
PMCID:
PMC3167776
Abstract Full Text PDF–1.8M Supplementary Material
Evolution of domain promiscuity in eukaryotic genomes—a perspective from the inferred ancestral domain architectures
Inbar Cohen-Gihon, Jessica H. Fong, Roded Sharan, Ruth Nussinov, Teresa M. Przytycka, Anna R. Panchenko
Mol Biosyst. Author manuscript; available in PMC 2012 April 7.
Published in final edited form as: Mol Biosyst. 2011 March; 7(3): 784–792. Published online 2010 December 3. doi: 10.1039/c0mb00182a
PMCID:
PMC3321261
Abstract Full Text PDF–2.7M Supplementary Material
Quantifying the mechanisms of domain gain in animal proteins
Marija Buljan, Adam Frankish, Alex Bateman
Genome Biol. 2010; 11(7): R74. Published online 2010 July 15. doi: 10.1186/gb-2010-11-7-r74
PMCID:
PMC2926785
Abstract Full Text PDF–1.0M Supplementary Material
The Evolutionary History of Protein Domains Viewed by Species Phylogeny
Song Yang, Philip E. Bourne
PLoS One. 2009; 4(12): e8378. Published online 2009 December 21. doi: 10.1371/journal.pone.0008378
PMCID:
PMC2794708
Abstract Full Text PDF–1.0M Supplementary Material
Nothing about Protein Structure Classification Makes Sense Except in the Light of Evolution
Ruben Valas, Song Yang, Philip E. Bourne
Curr Opin Struct Biol. Author manuscript; available in PMC 2010 June 1.
Published in final edited form as: Curr Opin Struct Biol. 2009 June; 19(3): 329–334. Published online 2009 April 24. doi: 10.1016/j.sbi.2009.03.011
PMCID:
PMC2696554
Abstract Full Text PDF–39K
Evolutionary origins of human apoptosis and genome-stability gene networks
Mauro A. A. Castro, Rodrigo J. S. Dalmolin, José C. F. Moreira, José C. M. Mombach, Rita M. C. de Almeida
Nucleic Acids Res. 2008 November; 36(19): 6269–6283. Published online 2008 November. doi: 10.1093/nar/gkn636
PMCID:
PMC2577361
Abstract Full Text PDF–1.0M Supplementary Material
Just how versatile are domains?
January Weiner, 3rd, Andrew D Moore, Erich Bornberg-Bauer
BMC Evol Biol. 2008; 8: 285. Published online 2008 October 14. doi: 10.1186/1471-2148-8-285
PMCID:
PMC2588589
Abstract Full Text PDF–393K
Roots of angiosperm formins: The evolutionary history of plant FH2 domain-containing proteins
Michal Grunt, Viktor Žárský, Fatima Cvrčková
BMC Evol Biol. 2008; 8: 115. Published online 2008 April 22. doi: 10.1186/1471-2148-8-115
PMCID:
PMC2386819
Abstract Full Text PDF–926K Supplementary Material
Evolution of protein domain promiscuity in eukaryotes
Malay Kumar Basu, Liran Carmel, Igor B. Rogozin, Eugene V. Koonin
Genome Res. 2008 March; 18(3): 449–461. doi: 10.1101/gr.6943508
PMCID:
PMC2259109
Abstract Full Text PDF–1.2M
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