Cited by ..

Functional coordination of alternative splicing in the mammalian central nervous system

Matthew Fagnani, Yoseph Barash, Joanna Y Ip, Christine Misquitta, Qun Pan, Arneet L Saltzman, Ofer Shai, Leo Lee, Aviad Rozenhek, Naveed Mohammad, Sandrine Willaime-Morawek, Tomas Babak, Wen Zhang, Timothy R Hughes, Derek van der Kooy, Brendan J Frey, Benjamin J Blencowe

Genome Biol. 2007; 8(6): R108. Published online 2007 June 12. doi: 10.1186/gb-2007-8-6-r108

PMCID:: PMC2394768

Abstract Full Text PDF–1.7M Supplementary Material

Is Cited by the Following 17 Articles in this Archive:

Antisense-Mediated RNA Targeting: Versatile and Expedient Genetic Manipulation in the Brain

Ioannis Zalachoras, Melvin M. Evers, Willeke M. C. van Roon-Mom, Annemieke M. Aartsma-Rus, Onno C. Meijer

Front Mol Neurosci. 2011; 4: 10. Prepublished online 2011 May 11. Published online 2011 July 19. doi: 10.3389/fnmol.2011.00010

PMCID:: PMC3142880

Abstract Full Text PDF–749K

Evaluating Gene Expression in C57BL/6J and DBA/2J Mouse Striatum Using RNA-Seq and Microarrays

Daniel Bottomly, Nicole A. R. Walter, Jessica Ezzell Hunter, Priscila Darakjian, Sunita Kawane, Kari J. Buck, Robert P. Searles, Michael Mooney, Shannon K. McWeeney, Robert Hitzemann

PLoS One. 2011; 6(3): e17820. Published online 2011 March 24. doi: 10.1371/journal.pone.0017820

PMCID:: PMC3063777

Abstract Full Text PDF–242K Supplementary Material

How do RNA sequence, DNA sequence, and chromatin properties regulate splicing?

Leonie Ringrose

F1000 Biol Rep. 2010; 2: 74. Published online 2010 October 12. doi: 10.3410/B2-74

PMCID:: PMC2989630

Abstract Full Text PDF–277K

mRNA degradation controls differentiation state-dependent differences in transcript and splice variant abundance

Peter A. C. 't Hoen, Michael Hirsch, Emile J. de Meijer, Renée X. de Menezes, Gert Jan van Ommen, Johan T. den Dunnen

Nucleic Acids Res. 2011 January; 39(2): 556–566. Published online 2010 September 17. doi: 10.1093/nar/gkq790

PMCID:: PMC3025562

Abstract Full Text PDF–581K Supplementary Material

Model-based detection of alternative splicing signals

Yoseph Barash, Benjamin J. Blencowe, Brendan J. Frey

Bioinformatics. 2010 June 15; 26(12): i325–i333. Published online 2010 June 1. doi: 10.1093/bioinformatics/btq200

PMCID:: PMC2881385

Abstract Full Text PDF–958K Supplementary Material

Splicing factor and exon profiling across human tissues

Pierre de la Grange, Lise Gratadou, Marc Delord, Martin Dutertre, Didier Auboeuf

Nucleic Acids Res. 2010 May; 38(9): 2825–2838. Published online 2010 January 27. doi: 10.1093/nar/gkq008

PMCID:: PMC2875023

Abstract Full Text PDF–18M Supplementary Material

Resolving RNA complexity to decipher regulatory rules governing biological networks

Donny D. Licatalosi, Robert B. Darnell

Nat Rev Genet. Author manuscript; available in PMC 2011 December 4.

Published in final edited form as: Nat Rev Genet. 2010 January; 11(1): 75–87. doi: 10.1038/nrg2673

PMCID:: PMC3229837

Abstract Full Text PDF–1.1M

Alternative pre-mRNA splicing switches modulate gene expression in late erythropoiesis

Miki L. Yamamoto, Tyson A. Clark, Sherry L. Gee, Jeong-Ah Kang, Anthony C. Schweitzer, Amittha Wickrema, John G. Conboy

Blood. 2009 April 2; 113(14): 3363–3370. Prepublished online 2009 February 4. doi: 10.1182/blood-2008-05-160325

PMCID:: PMC2665901

Abstract Full Text Supplementary Material

Multiple splice defects in ABCA1 cause low HDL-C in a family with Hypoalphalipoproteinemia and premature coronary disease

Jeffrey Rhyne, Myrna M Mantaring, David F Gardner, Michael Miller

BMC Med Genet. 2009; 10: 1. Published online 2009 January 8. doi: 10.1186/1471-2350-10-1

PMCID:: PMC2642808

Abstract Full Text PDF–503K

A postnatal switch of CELF and MBNL proteins reprograms alternative splicing in the developing heart

Auinash Kalsotra, Xinshu Xiao, Amanda J. Ward, John C. Castle, Jason M. Johnson, Christopher B. Burge, Thomas A. Cooper

Proc Natl Acad Sci U S A. 2008 December 23; 105(51): 20333–20338. Published online 2008 December 15. doi: 10.1073/pnas.0809045105

PMCID:: PMC2629332

Abstract Full Text PDF–1.3M Supplementary Material

Differential expression of 24,426 human alternative splicing events and predicted cis-regulation in 48 tissues and cell lines

John C. Castle, Chaolin Zhang, Jyoti K. Shah, Amit V. Kulkarni, Thomas A. Cooper, Jason M. Johnson

Nat Genet. Author manuscript; available in PMC 2011 October 20.

Published in final edited form as: Nat Genet. 2008 December; 40(12): 1416–1425. Published online 2008 November 2. doi: 10.1038/ng.264

PMCID:: PMC3197713

Abstract Full Text PDF–6.2M Supplementary Material

Defining the regulatory network of the tissue-specific splicing factors Fox-1 and Fox-2

Chaolin Zhang, Zuo Zhang, John Castle, Shuying Sun, Jason Johnson, Adrian R. Krainer, Michael Q. Zhang

Genes Dev. 2008 September 15; 22(18): 2550–2563. doi: 10.1101/gad.1703108

Correction in:: Genes Dev. 2008 October 15; 22(20): 2902.

PMCID:: PMC2546699

Abstract Full Text PDF–706K Correction

A systematic analysis of intronic sequences downstream of 5′ splice sites reveals a widespread role for U-rich motifs and TIA1/TIAL1 proteins in alternative splicing regulation

Isabel Aznarez, Yoseph Barash, Ofer Shai, David He, Julian Zielenski, Lap-Chee Tsui, John Parkinson, Brendan J. Frey, Johanna M. Rommens, Benjamin J. Blencowe

Genome Res. 2008 August; 18(8): 1247–1258. doi: 10.1101/gr.073155.107

PMCID:: PMC2493427

Abstract Full Text PDF–819K

Multiple and Specific mRNA Processing Targets for the Major Human hnRNP Proteins

Julian P. Venables, Chu-Shin Koh, Ulrike Froehlich, Elvy Lapointe, Sonia Couture, Lyna Inkel, Anne Bramard, Éric R. Paquet, Valérie Watier, Mathieu Durand, Jean-François Lucier, Julien Gervais-Bird, Karine Tremblay, Panagiotis Prinos, Roscoe Klinck, Sherif Abou Elela, Benoit Chabot

Mol Cell Biol. 2008 October; 28(19): 6033–6043. Published online 2008 July 21. doi: 10.1128/MCB.00726-08