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Functional coordination of alternative splicing in the mammalian central nervous system
Matthew Fagnani, Yoseph Barash, Joanna Y Ip, Christine Misquitta, Qun Pan, Arneet L Saltzman, Ofer Shai, Leo Lee, Aviad Rozenhek, Naveed Mohammad, Sandrine Willaime-Morawek, Tomas Babak, Wen Zhang, Timothy R Hughes, Derek van der Kooy, Brendan J Frey, Benjamin J Blencowe
Genome Biol. 2007; 8(6): R108. Published online 2007 June 12. doi: 10.1186/gb-2007-8-6-r108
PMCID:
PMC2394768
Abstract Full Text PDF–1.7M Supplementary Material

Is Cited by the Following 21 Articles in this Archive:

Functional consequences of developmentally regulated alternative splicing
Auinash Kalsotra, Thomas A. Cooper
Nat Rev Genet. Author manuscript; available in PMC 2012 April 7.
Published in final edited form as: Nat Rev Genet. 2011 September 16; 12(10): 715–729. doi: 10.1038/nrg3052
PMCID:
PMC3321218
Abstract Full Text PDF–1.0M
Quantitative analysis of 5HT2C receptor RNA editing patterns in psychiatric disorders
Richard T. O’Neil, Ronald B. Emeson
Neurobiol Dis. Author manuscript; available in PMC 2013 January 1.
Published in final edited form as: Neurobiol Dis. 2012 January; 45(1): 8–13. Published online 2011 September 3. doi: 10.1016/j.nbd.2011.08.026
PMCID:
PMC3225646
Free in PMC on 2013/01/01
Antisense-Mediated RNA Targeting: Versatile and Expedient Genetic Manipulation in the Brain
Ioannis Zalachoras, Melvin M. Evers, Willeke M. C. van Roon-Mom, Annemieke M. Aartsma-Rus, Onno C. Meijer
Front Mol Neurosci. 2011; 4: 10. Prepublished online 2011 May 11. Published online 2011 July 19. doi: 10.3389/fnmol.2011.00010
PMCID:
PMC3142880
Abstract Full Text PDF–749K
Networking in a global world: Establishing functional connections between neural splicing regulators and their target transcripts
John A. Calarco, Mei Zhen, Benjamin J. Blencowe
RNA. 2011 May; 17(5): 775–791. doi: 10.1261/rna.2603911
PMCID:
PMC3078728
Abstract Full Text PDF–439K
Evaluating Gene Expression in C57BL/6J and DBA/2J Mouse Striatum Using RNA-Seq and Microarrays
Daniel Bottomly, Nicole A. R. Walter, Jessica Ezzell Hunter, Priscila Darakjian, Sunita Kawane, Kari J. Buck, Robert P. Searles, Michael Mooney, Shannon K. McWeeney, Robert Hitzemann
PLoS One. 2011; 6(3): e17820. Published online 2011 March 24. doi: 10.1371/journal.pone.0017820
PMCID:
PMC3063777
Abstract Full Text PDF–242K Supplementary Material
Efficient in Vivo Manipulation of Alternative Pre-mRNA Splicing Events Using Antisense Morpholinos in Mice
Marilyn K. Parra, Sherry Gee, Narla Mohandas, John G. Conboy
J Biol Chem. 2011 February 25; 286(8): 6033–6039. Published online 2010 December 14. doi: 10.1074/jbc.M110.158154
PMCID:
PMC3057813
Abstract Full Text
How do RNA sequence, DNA sequence, and chromatin properties regulate splicing?
Leonie Ringrose
F1000 Biol Rep. 2010; 2: 74. Published online 2010 October 12. doi: 10.3410/B2-74
PMCID:
PMC2989630
Abstract Full Text PDF–277K
mRNA degradation controls differentiation state-dependent differences in transcript and splice variant abundance
Peter A. C. 't Hoen, Michael Hirsch, Emile J. de Meijer, Renée X. de Menezes, Gert Jan van Ommen, Johan T. den Dunnen
Nucleic Acids Res. 2011 January; 39(2): 556–566. Published online 2010 September 17. doi: 10.1093/nar/gkq790
PMCID:
PMC3025562
Abstract Full Text PDF–581K Supplementary Material
Model-based detection of alternative splicing signals
Yoseph Barash, Benjamin J. Blencowe, Brendan J. Frey
Bioinformatics. 2010 June 15; 26(12): i325–i333. Published online 2010 June 1. doi: 10.1093/bioinformatics/btq200
PMCID:
PMC2881385
Abstract Full Text PDF–958K Supplementary Material
Splicing factor and exon profiling across human tissues
Pierre de la Grange, Lise Gratadou, Marc Delord, Martin Dutertre, Didier Auboeuf
Nucleic Acids Res. 2010 May; 38(9): 2825–2838. Published online 2010 January 27. doi: 10.1093/nar/gkq008
PMCID:
PMC2875023
Abstract Full Text PDF–18M Supplementary Material
Resolving RNA complexity to decipher regulatory rules governing biological networks
Donny D. Licatalosi, Robert B. Darnell
Nat Rev Genet. Author manuscript; available in PMC 2011 December 4.
Published in final edited form as: Nat Rev Genet. 2010 January; 11(1): 75–87. doi: 10.1038/nrg2673
PMCID:
PMC3229837
Abstract Full Text PDF–1.1M
Alternative pre-mRNA splicing switches modulate gene expression in late erythropoiesis
Miki L. Yamamoto, Tyson A. Clark, Sherry L. Gee, Jeong-Ah Kang, Anthony C. Schweitzer, Amittha Wickrema, John G. Conboy
Blood. 2009 April 2; 113(14): 3363–3370. Prepublished online 2009 February 4. doi: 10.1182/blood-2008-05-160325
PMCID:
PMC2665901
Abstract Full Text Supplementary Material
Multiple splice defects in ABCA1 cause low HDL-C in a family with Hypoalphalipoproteinemia and premature coronary disease
Jeffrey Rhyne, Myrna M Mantaring, David F Gardner, Michael Miller
BMC Med Genet. 2009; 10: 1. Published online 2009 January 8. doi: 10.1186/1471-2350-10-1
PMCID:
PMC2642808
Abstract Full Text PDF–503K
A postnatal switch of CELF and MBNL proteins reprograms alternative splicing in the developing heart
Auinash Kalsotra, Xinshu Xiao, Amanda J. Ward, John C. Castle, Jason M. Johnson, Christopher B. Burge, Thomas A. Cooper
Proc Natl Acad Sci U S A. 2008 December 23; 105(51): 20333–20338. Published online 2008 December 15. doi: 10.1073/pnas.0809045105
PMCID:
PMC2629332
Abstract Full Text PDF–1.3M Supplementary Material
Differential expression of 24,426 human alternative splicing events and predicted cis-regulation in 48 tissues and cell lines
John C. Castle, Chaolin Zhang, Jyoti K. Shah, Amit V. Kulkarni, Thomas A. Cooper, Jason M. Johnson
Nat Genet. Author manuscript; available in PMC 2011 October 20.
Published in final edited form as: Nat Genet. 2008 December; 40(12): 1416–1425. Published online 2008 November 2. doi: 10.1038/ng.264
PMCID:
PMC3197713
Abstract Full Text PDF–6.2M Supplementary Material
Defining the regulatory network of the tissue-specific splicing factors Fox-1 and Fox-2
Chaolin Zhang, Zuo Zhang, John Castle, Shuying Sun, Jason Johnson, Adrian R. Krainer, Michael Q. Zhang
Genes Dev. 2008 September 15; 22(18): 2550–2563. doi: 10.1101/gad.1703108
Correction in:
Genes Dev. 2008 October 15; 22(20): 2902.
PMCID:
PMC2546699
Abstract Full Text PDF–706K Correction
A systematic analysis of intronic sequences downstream of 5′ splice sites reveals a widespread role for U-rich motifs and TIA1/TIAL1 proteins in alternative splicing regulation
Isabel Aznarez, Yoseph Barash, Ofer Shai, David He, Julian Zielenski, Lap-Chee Tsui, John Parkinson, Brendan J. Frey, Johanna M. Rommens, Benjamin J. Blencowe
Genome Res. 2008 August; 18(8): 1247–1258. doi: 10.1101/gr.073155.107
PMCID:
PMC2493427
Abstract Full Text PDF–819K
Multiple and Specific mRNA Processing Targets for the Major Human hnRNP Proteins
Julian P. Venables, Chu-Shin Koh, Ulrike Froehlich, Elvy Lapointe, Sonia Couture, Lyna Inkel, Anne Bramard, Éric R. Paquet, Valérie Watier, Mathieu Durand, Jean-François Lucier, Julien Gervais-Bird, Karine Tremblay, Panagiotis Prinos, Roscoe Klinck, Sherif Abou Elela, Benoit Chabot
Mol Cell Biol. 2008 October; 28(19): 6033–6043. Published online 2008 July 21. doi: 10.1128/MCB.00726-08
PMCID:
PMC2547008
Abstract Full Text PDF–1.9M Supplementary Material
Functional importance of different patterns of correlation between adjacent cassette exons in human and mouse
Tao Peng, Chenghai Xue, Jianning Bi, Tingting Li, Xiaowo Wang, Xuegong Zhang, Yanda Li
BMC Genomics. 2008; 9: 191. Published online 2008 April 26. doi: 10.1186/1471-2164-9-191
PMCID:
PMC2432081
Abstract Full Text PDF–2.2M Supplementary Material
Global analysis of mRNA splicing
Michael J. Moore, Pamela A. Silver
RNA. 2008 February; 14(2): 197–203. doi: 10.1261/rna.868008
PMCID:
PMC2212243
Abstract Full Text PDF–219K
Global analysis of alternative splicing differences between humans and chimpanzees
John A. Calarco, Yi Xing, Mario Cáceres, Joseph P. Calarco, Xinshu Xiao, Qun Pan, Christopher Lee, Todd M. Preuss, Benjamin J. Blencowe
Genes Dev. 2007 November 15; 21(22): 2963–2975. doi: 10.1101/gad.1606907
PMCID:
PMC2049197
Abstract Full Text PDF–542K
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