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Cloning and characterization of microRNAs from wheat (Triticum aestivum L.)
Yingyin Yao, Ganggang Guo, Zhongfu Ni, Ramanjulu Sunkar, Jinkun Du, Jian-Kang Zhu, Qixin Sun
Genome Biol. 2007; 8(6): R96. Published online 2007 June 1. doi: 10.1186/gb-2007-8-6-r96
PMCID:
PMC2394755
Abstract Full Text PDF–717K Supplementary Material
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 Is Cited by the Following 42 Articles in this Archive:
Functional Specialization of the Plant miR396 Regulatory Network through Distinct MicroRNA–Target Interactions
Juan M. Debernardi, Ramiro E. Rodriguez, Martin A. Mecchia, Javier F. Palatnik
PLoS Genet. 2012 January; 8(1): e1002419. Published online 2012 January 5. doi: 10.1371/journal.pgen.1002419
PMCID:
PMC3252272
Abstract Full Text PDF–2.6M Supplementary Material
Cloning and Characterization of Maize miRNAs Involved in Responses to Nitrogen Deficiency
Meng Zhao, Huanhuan Tai, Suzhen Sun, Fusuo Zhang, Yunbi Xu, Wen-Xue Li
PLoS One. 2012; 7(1): e29669. Published online 2012 January 3. doi: 10.1371/journal.pone.0029669
PMCID:
PMC3250470
Abstract Full Text PDF–1010K Supplementary Material
Cloning and Characterization of Maize miRNAs Involved in Responses to Nitrogen Deficiency
Meng Zhao, Huanhuan Tai, Suzhen Sun, Fusuo Zhang, Yunbi Xu, Wen-Xue Li
PLoS One. 2012; 7(1): e29669. Published online 2012 January 3. doi: 10.1371/journal.pone.0029669
PMCID:
PMC3250470
Abstract Full Text PDF–1010K Supplementary Material
Identification and Characterization of microRNAs from Peanut (Arachis hypogaea L.) by High-Throughput Sequencing
Xiaoyuan Chi, Qingli Yang, Xiaoping Chen, Jinyan Wang, Lijuan Pan, Mingna Chen, Zhen Yang, Yanan He, Xuanqiang Liang, Shanlin Yu
PLoS One. 2011; 6(11): e27530. Published online 2011 November 16. doi: 10.1371/journal.pone.0027530
PMCID:
PMC3217988
Abstract Full Text PDF–606K Supplementary Material
First Survey of the Wheat Chromosome 5A Composition through a Next Generation Sequencing Approach
Nicola Vitulo, Alessandro Albiero, Claudio Forcato, Davide Campagna, Francesca Dal Pero, Paolo Bagnaresi, Moreno Colaiacovo, Primetta Faccioli, Antonella Lamontanara, Hana Šimková, Marie Kubaláková, Gaetano Perrotta, Paolo Facella, Loredana Lopez, Marco Pietrella, Giulio Gianese, Jaroslav Doležel, Giovanni Giuliano, Luigi Cattivelli, Giorgio Valle, A. Michele Stanca
PLoS One. 2011; 6(10): e26421. Published online 2011 October 18. doi: 10.1371/journal.pone.0026421
PMCID:
PMC3196578
Abstract Full Text PDF–813K Supplementary Material
Analysis of conserved microRNAs in floral tissues of sexual and apomictic Boechera species
Samuel Amiteye, José M Corral, Heiko Vogel, Timothy F Sharbel
BMC Genomics. 2011; 12: 500. Published online 2011 October 11. doi: 10.1186/1471-2164-12-500
PMCID:
PMC3208272
Abstract Full Text PDF–535K Supplementary Material
Characterization and Comparative Profiling of MiRNA Transcriptomes in Bighead Carp and Silver Carp
Wei Chi, Chaobo Tong, Xiaoni Gan, Shunping He
PLoS One. 2011; 6(8): e23549. Published online 2011 August 15. doi: 10.1371/journal.pone.0023549
PMCID:
PMC3156240
Abstract Full Text PDF–1.4M Supplementary Material
Analysis of the melon (Cucumis melo) small RNAome by high-throughput pyrosequencing
Daniel Gonzalez-Ibeas, José Blanca, Livia Donaire, Montserrat Saladié, Albert Mascarell-Creus, Ana Cano-Delgado, Jordi Garcia-Mas, Cesar Llave, Miguel A Aranda
BMC Genomics. 2011; 12: 393. Published online 2011 August 3. doi: 10.1186/1471-2164-12-393
PMCID:
PMC3163571
Abstract Full Text PDF–1.1M Supplementary Material
Identification of drought-responsive microRNAs in Medicago truncatula by genome-wide high-throughput sequencing
Tianzuo Wang, Lei Chen, Mingui Zhao, Qiuying Tian, Wen-Hao Zhang
BMC Genomics. 2011; 12: 367. Published online 2011 July 15. doi: 10.1186/1471-2164-12-367
PMCID:
PMC3160423
Abstract Full Text PDF–647K Supplementary Material
High-Throughput Sequencing, Characterization and Detection of New and Conserved Cucumber miRNAs
Germán Martínez, Javier Forment, Cesar Llave, Vicente Pallás, Gustavo Gómez
PLoS One. 2011; 6(5): e19523. Published online 2011 May 16. doi: 10.1371/journal.pone.0019523
PMCID:
PMC3095615
Abstract Full Text PDF–614K Supplementary Material
Discovery of barley miRNAs through deep sequencing of short reads
Andreas W Schreiber, Bu-Jun Shi, Chun-Yuan Huang, Peter Langridge, Ute Baumann
BMC Genomics. 2011; 12: 129. Published online 2011 February 25. doi: 10.1186/1471-2164-12-129
PMCID:
PMC3060140
Abstract Full Text PDF–873K Supplementary Material
Identification and expression analysis of microRNAs and targets in the biofuel crop sugarcane
Almir S Zanca, Renato Vicentini, Fausto A Ortiz-Morea, Luiz EV Del Bem, Marcio J da Silva, Michel Vincentz, Fabio TS Nogueira
BMC Plant Biol. 2010; 10: 260. Published online 2010 November 24. doi: 10.1186/1471-2229-10-260
PMCID:
PMC3017846
Abstract Full Text PDF–1.4M Supplementary Material
A computational-based update on microRNAs and their targets in barley (Hordeum vulgare L.)
Moreno Colaiacovo, Annalisa Subacchi, Paolo Bagnaresi, Antonella Lamontanara, Luigi Cattivelli, Primetta Faccioli
BMC Genomics. 2010; 11: 595. Published online 2010 October 22. doi: 10.1186/1471-2164-11-595
PMCID:
PMC3091740
Abstract Full Text PDF–1.2M Supplementary Material
Deep sequencing discovery of novel and conserved microRNAs in trifoliate orange (Citrus trifoliata)
Changnian Song, Chen Wang, Changqing Zhang, Nicholas Kibet Korir, Huaping Yu, Zhengqiang Ma, Jinggui Fang
BMC Genomics. 2010; 11: 431. Published online 2010 July 13. doi: 10.1186/1471-2164-11-431
PMCID:
PMC2996959
Abstract Full Text PDF–871K Supplementary Material
Diverse set of microRNAs are responsive to powdery mildew infection and heat stress in wheat (Triticum aestivum L.)
Mingming Xin, Yu Wang, Yingyin Yao, Chaojie Xie, Huiru Peng, Zhongfu Ni, Qixin Sun
BMC Plant Biol. 2010; 10: 123. Published online 2010 June 24. doi: 10.1186/1471-2229-10-123
PMCID:
PMC3095282
Abstract Full Text PDF–2.0M Supplementary Material
Misexpression of miR482, miR1512, and miR1515 Increases Soybean Nodulation
Hui Li, Ying Deng, Tianlong Wu, Senthil Subramanian, Oliver Yu
Plant Physiol. 2010 August; 153(4): 1759–1770. Published online 2010 May 27. doi: 10.1104/pp.110.156950
PMCID:
PMC2923892
Abstract Full Text PDF–766K Supplementary Material
Identification of miRNA from Porphyra yezoensis by High-Throughput Sequencing and Bioinformatics Analysis
Chengwei Liang, Xiaowen Zhang, Jian Zou, Dong Xu, Feng Su, Naihao Ye
PLoS One. 2010; 5(5): e10698. Published online 2010 May 19. doi: 10.1371/journal.pone.0010698
PMCID:
PMC2873431
Abstract Full Text PDF–269K Supplementary Material
Discovery and comparative profiling of microRNAs in a sweet orange red-flesh mutant and its wild type
Qiang Xu, Yuanlong Liu, Andan Zhu, Xiaomeng Wu, Junli Ye, Keqin Yu, Wenwu Guo, Xiuxin Deng
BMC Genomics. 2010; 11: 246. Published online 2010 April 17. doi: 10.1186/1471-2164-11-246
PMCID:
PMC2864249
Abstract Full Text PDF–2.4M Supplementary Material
Phloem small RNAs, nutrient stress responses, and systemic mobility
Anja Buhtz, Janin Pieritz, Franziska Springer, Julia Kehr
BMC Plant Biol. 2010; 10: 64. Published online 2010 April 13. doi: 10.1186/1471-2229-10-64
PMCID:
PMC2923538
Abstract Full Text PDF–1.4M Supplementary Material
Non-coding small RNAs responsive to abiotic stress in wheat (Triticum aestivum L.)
Yingyin Yao, Zhongfu Ni, Huiru Peng, Fenglong Sun, Mingming Xin, Ramanjulu Sunkar, Jian-Kang Zhu, Qixin Sun
Funct Integr Genomics. Author manuscript; available in PMC 2011 March 16.
Published in final edited form as: Funct Integr Genomics. 2010 May; 10(2): 187–190. Published online 2010 March 9. doi: 10.1007/s10142-010-0163-6
PMCID:
PMC3059194
Abstract Full Text PDF–442K
Small RNA Diversity in Plants and its Impact in Development
Christine Lelandais-Brière, Céline Sorin, Marie Declerck, Abdelali Benslimane, Martin Crespi, Caroline Hartmann
Curr Genomics. 2010 March; 11(1): 14–23. doi: 10.2174/138920210790217918
PMCID:
PMC2851111
Abstract Full Text PDF–292K
Small RNAs – secrets and surprises of the genome
Xuemei Chen
Plant J. Author manuscript; available in PMC 2011 March 22.
Published in final edited form as: Plant J. 2010 March; 61(6): 941–958. doi: 10.1111/j.1365-313X.2009.04089.x
PMCID:
PMC3062250
Abstract Full Text PDF–593K
Correction: High throughput approaches reveal splicing of primary microRNA transcripts and tissue specific expression of mature microRNAs in Vitis vinifera
Erica Mica, Viviana Piccolo, Massimo Delledonne, Alberto Ferrarini, Mario Pezzotti, Cesare Casati, Cristian Del Fabbro, Giorgio Valle, Alberto Policriti, Michele Morgante, Graziano Pesole, M Enrico Pè, David S Horner
BMC Genomics. 2010; 11: 109. Published online 2010 February 12. doi: 10.1186/1471-2164-11-109
Corrects:
BMC Genomics. 2009; 10: 558.
PMCID:
PMC2831844
Correction PDF–1.0M Supplementary Material Original Article
PMRD: plant microRNA database
Zhenhai Zhang, Jingyin Yu, Daofeng Li, Zuyong Zhang, Fengxia Liu, Xin Zhou, Tao Wang, Yi Ling, Zhen Su
Nucleic Acids Res. 2010 January; 38(Database issue): D806–D813. Published online 2010 January. doi: 10.1093/nar/gkp818
PMCID:
PMC2808885
Abstract Full Text PDF–2.9M
High throughput approaches reveal splicing of primary microRNA transcripts and tissue specific expression of mature microRNAs in Vitis vinifera
Erica Mica, Viviana Piccolo, Massimo Delledonne, Alberto Ferrarini, Mario Pezzotti, Cesare Casati, Cristian Del Fabbro, Giorgio Valle, Alberto Policriti, Michele Morgante, Graziano Pesole, M Enrico Pè, David S Horner
BMC Genomics. 2009; 10: 558. Published online 2009 November 25. doi: 10.1186/1471-2164-10-558
Correction in:
BMC Genomics. 2010; 11: 109.
PMCID:
PMC2822795
Abstract Full Text PDF–1.5M Supplementary Material Correction
A Genome-Wide Characterization of MicroRNA Genes in Maize
Lifang Zhang, Jer-Ming Chia, Sunita Kumari, Joshua C. Stein, Zhijie Liu, Apurva Narechania, Christopher A. Maher, Katherine Guill, Michael D. McMullen, Doreen Ware
PLoS Genet. 2009 November; 5(11): e1000716. Published online 2009 November 20. doi: 10.1371/journal.pgen.1000716
PMCID:
PMC2773440
Abstract Full Text PDF–791K Supplementary Material
miRExpress: Analyzing high-throughput sequencing data for profiling microRNA expression
Wei-Chi Wang, Feng-Mao Lin, Wen-Chi Chang, Kuan-Yu Lin, Hsien-Da Huang, Na-Sheng Lin
BMC Bioinformatics. 2009; 10: 328. Published online 2009 October 12. doi: 10.1186/1471-2105-10-328
PMCID:
PMC2767369
Abstract Full Text PDF–1.4M Supplementary Material
Enrichment of a set of microRNAs during the cotton fiber development
Pieter Bas Kwak, Qin Qin Wang, Xu Sheng Chen, Cheng Xiang Qiu, Zhi Min Yang
BMC Genomics. 2009; 10: 457. Published online 2009 September 29. doi: 10.1186/1471-2164-10-457
PMCID:
PMC2760587
Abstract Full Text PDF–808K Supplementary Material
Deep sequencing of Brachypodium small RNAs at the global genome level identifies microRNAs involved in cold stress response
Jingyu Zhang, Yunyuan Xu, Qing Huan, Kang Chong
BMC Genomics. 2009; 10: 449. Published online 2009 September 23. doi: 10.1186/1471-2164-10-449
PMCID:
PMC2759970
Abstract Full Text PDF–763K Supplementary Material
Identification of genomic regions determining the phenological development leading to floral transition in wheat (Triticum aestivum L.)
Monica Båga, D. Brian Fowler, Ravindra N. Chibbar
J Exp Bot. 2009 August; 60(12): 3575–3585. Published online 2009 June 24. doi: 10.1093/jxb/erp199
PMCID:
PMC2724704
Abstract Full Text PDF–674K
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