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Celsius: a community resource for Affymetrix microarray data
Allen Day, Marc RJ Carlson, Jun Dong, Brian D O'Connor, Stanley F Nelson
Genome Biol. 2007; 8(6): R112. Published online 2007 June 14. doi: 10.1186/gb-2007-8-6-r112
PMCID:
PMC2394754
Abstract Full Text PDF–583K Supplementary Material

Is Cited by the Following 25 Articles in this Archive:

Exome Sequencing Identifies CCDC8 Mutations in 3-M Syndrome, Suggesting that CCDC8 Contributes in a Pathway with CUL7 and OBSL1 to Control Human Growth
Dan Hanson, Philip G. Murray, James O'Sullivan, Jill Urquhart, Sarah Daly, Sanjeev S. Bhaskar, Leslie G. Biesecker, Mars Skae, Claire Smith, Trevor Cole, Jeremy Kirk, Kate Chandler, Helen Kingston, Dian Donnai, Peter E. Clayton, Graeme C.M. Black
Am J Hum Genet. 2011 July 15; 89(1): 148–153. doi: 10.1016/j.ajhg.2011.05.028
PMCID:
PMC3135816
Abstract Full Text PDF–784K Supplementary Material
Genome-wide association and linkage identify modifier loci of lung disease severity in cystic fibrosis at 11p13 and 20q13.2
Fred A. Wright, Lisa J. Strug, Vishal K. Doshi, Clayton W. Commander, Scott M. Blackman, Lei Sun, Yves Berthiaume, David Cutler, Andreea Cojocaru, J. Michael Collaco, Mary Corey, Ruslan Dorfman, Katrina Goddard, Deanna Green, Jack W. Kent, Jr, Ethan M. Lange, Seunggeun Lee, Weili Li, Jingchun Luo, Gregory M. Mayhew, Kathleen M. Naughton, Rhonda G. Pace, Peter Paré, Johanna M. Rommens, Andrew Sandford, Jaclyn R. Stonebraker, Wei Sun, Chelsea Taylor, Lori L. Vanscoy, Fei Zou, John Blangero, Julian Zielenski, Wanda K. O’Neal, Mitchell L. Drumm, Peter R. Durie, Michael R. Knowles, Garry R. Cutting
Nat Genet. Author manuscript; available in PMC 2012 March 7.
Published in final edited form as: Nat Genet. 2011 June; 43(6): 539–546. Published online 2011 May 22. doi: 10.1038/ng.838
PMCID:
PMC3296486
Abstract Full Text PDF–1.2M Supplementary Material
Alignment of gene expression profiles from test samples against a reference database: New method for context-specific interpretation of microarray data
Sami K Kilpinen, Kalle A Ojala, Olli P Kallioniemi
BioData Min. 2011; 4: 5. Published online 2011 March 31. doi: 10.1186/1756-0381-4-5
PMCID:
PMC3080808
Abstract Full Text PDF–3.5M Supplementary Material
Gene expression profile correlates with T cell infiltration and relative survival in glioblastoma patients vaccinated with dendritic cell immunotherapy
Robert M. Prins, Horacio Soto, Vera Konkankit, Sylvia K. Odesa, Ascia Eskin, William H. Yong, Stanley F. Nelson, Linda M. Liau
Clin Cancer Res. Author manuscript; available in PMC 2012 March 15.
Published in final edited form as: Clin Cancer Res. 2011 March 15; 17(6): 1603–1615. Published online 2010 December 6. doi: 10.1158/1078-0432.CCR-10-2563
PMCID:
PMC3071163
Abstract Full Text PDF–1.7M Supplementary Material
Fibrochondrogenesis Results from Mutations in the COL11A1 Type XI Collagen Gene
Stuart W. Tompson, Carlos A. Bacino, Nicole P. Safina, Michael B. Bober, Virginia K. Proud, Tara Funari, Michael F. Wangler, Lisette Nevarez, Leena Ala-Kokko, William R. Wilcox, David R. Eyre, Deborah Krakow, Daniel H. Cohn
Am J Hum Genet. 2010 November 12; 87(5): 708–712. doi: 10.1016/j.ajhg.2010.10.009
PMCID:
PMC2978944
Abstract Full Text PDF–487K
The GMOD Drupal Bioinformatic Server Framework
Alexie Papanicolaou, David G. Heckel
Bioinformatics. 2010 December 15; 26(24): 3119–3124. Published online 2010 October 22. doi: 10.1093/bioinformatics/btq599
PMCID:
PMC2995126
Abstract Full Text PDF–197K
Microarray meta-analysis database (M2DB): a uniformly pre-processed, quality controlled, and manually curated human clinical microarray database
Wei-Chung Cheng, Min-Lung Tsai, Cheng-Wei Chang, Ching-Lung Huang, Chaang-Ray Chen, Wun-Yi Shu, Yun-Shien Lee, Tzu-Hao Wang, Ji-Hong Hong, Chia-Yang Li, Ian C Hsu
BMC Bioinformatics. 2010; 11: 421. Published online 2010 August 10. doi: 10.1186/1471-2105-11-421
PMCID:
PMC2928207
Abstract Full Text PDF–992K Supplementary Material
Divergence of human and mouse brain transcriptome highlights Alzheimer disease pathways
Jeremy A. Miller, Steve Horvath, Daniel H. Geschwind
Proc Natl Acad Sci U S A. 2010 July 13; 107(28): 12698–12703. Published online 2010 June 25. doi: 10.1073/pnas.0914257107
PMCID:
PMC2906579
Abstract Full Text PDF–719K Supplementary Material
A Quick Guide to Large-Scale Genomic Data Mining
Curtis Huttenhower, Oliver Hofmann
PLoS Comput Biol. 2010 May; 6(5): e1000779. Published online 2010 May 27. doi: 10.1371/journal.pcbi.1000779
PMCID:
PMC2877728
Full Text PDF–882K Supplementary Material
A global map of human gene expression
Margus Lukk, Misha Kapushesky, Janne Nikkilä, Helen Parkinson, Angela Goncalves, Wolfgang Huber, Esko Ukkonen, Alvis Brazma
Nat Biotechnol. Author manuscript; available in PMC 2010 November 5.
Published in final edited form as: Nat Biotechnol. 2010 April; 28(4): 322–324. doi: 10.1038/nbt0410-322
PMCID:
PMC2974261
Full Text PDF–102K Supplementary Material
Disease Gene Characterization through Large-Scale Co-Expression Analysis
Allen Day, Jun Dong, Vincent A. Funari, Bret Harry, Samuel P. Strom, Dan H. Cohn, Stanley F. Nelson
PLoS One. 2009; 4(12): e8491. Published online 2009 December 31. doi: 10.1371/journal.pone.0008491
PMCID:
PMC2797297
Abstract Full Text PDF–419K Supplementary Material
Identification of Mutations in TRAPPC9, which Encodes the NIK- and IKK-β-Binding Protein, in Nonsyndromic Autosomal-Recessive Mental Retardation
Asif Mir, Liana Kaufman, Abdul Noor, Mahdi M. Motazacker, Talal Jamil, Matloob Azam, Kimia Kahrizi, Muhammad Arshad Rafiq, Rosanna Weksberg, Tanveer Nasr, Farooq Naeem, Andreas Tzschach, Andreas W. Kuss, Gisele E. Ishak, Dan Doherty, H. Hilger Ropers, A. James Barkovich, Hossein Najmabadi, Muhammad Ayub, John B. Vincent
Am J Hum Genet. 2009 December 11; 85(6): 909–915. doi: 10.1016/j.ajhg.2009.11.009
PMCID:
PMC2790571
Abstract Full Text PDF–650K Supplementary Material
Genomic landscape of meningiomas
Yohan Lee, Jason Liu, Shilpa Patel, Timothy Cloughesy, Albert Lai, Haumith Farooqi, David Seligson, Jun Dong, Linda Liau, Donald Becker, Paul Mischel, Soheil Shams, Stanley Nelson
Brain Pathol. Author manuscript; available in PMC 2011 September 6.
Published in final edited form as: Brain Pathol. 2010 July; 20(4): 751–762. Published online 2009 November 20. doi: 10.1111/j.1750-3639.2009.00356.x
PMCID:
PMC3167483
Abstract Full Text PDF–1.0M Supplementary Material
Conserved Expression Patterns Predict microRNA Targets
William Ritchie, Megha Rajasekhar, Stephane Flamant, John E. J. Rasko
PLoS Comput Biol. 2009 September; 5(9): e1000513. Published online 2009 September 25. doi: 10.1371/journal.pcbi.1000513
PMCID:
PMC2736581
Abstract Full Text PDF–292K Supplementary Material
The organization of the transcriptional network in specific neuronal classes
Kellen D Winden, Michael C Oldham, Karoly Mirnics, Philip J Ebert, Christo H Swan, Pat Levitt, John L Rubenstein, Steve Horvath, Daniel H Geschwind
Mol Syst Biol. 2009; 5: 291. Published online 2009 July 28. doi: 10.1038/msb.2009.46
PMCID:
PMC2724976
Abstract Full Text PDF–5.8M Supplementary Material
Construction and use of gene expression covariation matrix
Jérôme Hennetin, Petri Pehkonen, Michel Bellis
BMC Bioinformatics. 2009; 10: 214. Published online 2009 July 13. doi: 10.1186/1471-2105-10-214
PMCID:
PMC2720390
Abstract Full Text PDF–1019K Supplementary Material
SiPaGene: A new repository for instant online retrieval, sharing and meta-analyses of GeneChip® expression data
Adriane Menßen, Götz Edinger, Joachim R Grün, Ulrike Haase, Ria Baumgrass, Andreas Grützkau, Andreas Radbruch, Gerd-R Burmester, Thomas Häupl
BMC Genomics. 2009; 10: 98. Published online 2009 March 5. doi: 10.1186/1471-2164-10-98
PMCID:
PMC2657156
Abstract Full Text PDF–3.2M
Comparison of Affymetrix data normalization methods using 6,926 experiments across five array generations
Reija Autio, Sami Kilpinen, Matti Saarela, Olli Kallioniemi, Sampsa Hautaniemi, Jaakko Astola
BMC Bioinformatics. 2009; 10(Suppl 1): S24. Published online 2009 January 30. doi: 10.1186/1471-2105-10-S1-S24
PMCID:
PMC2648747
Abstract Full Text PDF–998K
EMAAS: An extensible grid-based Rich Internet Application for microarray data analysis and management
G Barton, J Abbott, N Chiba, DW Huang, Y Huang, M Krznaric, J Mack-Smith, A Saleem, BT Sherman, B Tiwari, C Tomlinson, T Aitman, J Darlington, L Game, MJE Sternberg, SA Butcher
BMC Bioinformatics. 2008; 9: 493. Published online 2008 November 25. doi: 10.1186/1471-2105-9-493
PMCID:
PMC2615452
Abstract Full Text PDF–1.5M
Boolean implication networks derived from large scale, whole genome microarray datasets
Debashis Sahoo, David L Dill, Andrew J Gentles, Robert Tibshirani, Sylvia K Plevritis
Genome Biol. 2008; 9(10): R157. Published online 2008 October 30. doi: 10.1186/gb-2008-9-10-r157
PMCID:
PMC2760884
Abstract Full Text PDF–5.0M Supplementary Material
Gene expression analysis of glioblastomas identifies the major molecular basis for the prognostic benefit of younger age
Yohan Lee, Adrienne C Scheck, Timothy F Cloughesy, Albert Lai, Jun Dong, Haumith K Farooqi, Linda M Liau, Steve Horvath, Paul S Mischel, Stanley F Nelson
BMC Med Genomics. 2008; 1: 52. Published online 2008 October 21. doi: 10.1186/1755-8794-1-52
PMCID:
PMC2596165
Abstract Full Text PDF–488K Supplementary Material
Systematic bioinformatic analysis of expression levels of 17,330 human genes across 9,783 samples from 175 types of healthy and pathological tissues
Sami Kilpinen, Reija Autio, Kalle Ojala, Kristiina Iljin, Elmar Bucher, Henri Sara, Tommi Pisto, Matti Saarela, Rolf I Skotheim, Mari Björkman, John-Patrick Mpindi, Saija Haapa-Paananen, Paula Vainio, Henrik Edgren, Maija Wolf, Jaakko Astola, Matthias Nees, Sampsa Hautaniemi, Olli Kallioniemi
Genome Biol. 2008; 9(9): R139. Published online 2008 September 19. doi: 10.1186/gb-2008-9-9-r139
PMCID:
PMC2592717
Abstract Full Text PDF–2.2M Supplementary Material
MiMiR – an integrated platform for microarray data sharing, mining and analysis
Chris Tomlinson, Manjula Thimma, Stelios Alexandrakis, Tito Castillo, Jayne L Dennis, Anthony Brooks, Thomas Bradley, Carly Turnbull, Ekaterini Blaveri, Geraint Barton, Norie Chiba, Klio Maratou, Pat Soutter, Tim Aitman, Laurence Game
BMC Bioinformatics. 2008; 9: 379. Published online 2008 September 18. doi: 10.1186/1471-2105-9-379
PMCID:
PMC2572073
Abstract Full Text PDF–1.1M Supplementary Material
Combined Analysis of Murine and Human Microarrays and ChIP Analysis Reveals Genes Associated with the Ability of MYC To Maintain Tumorigenesis
Chi-Hwa Wu, Debashis Sahoo, Constadina Arvanitis, Nicole Bradon, David L. Dill, Dean W. Felsher
PLoS Genet. 2008 June; 4(6): e1000090. Published online 2008 June 6. doi: 10.1371/journal.pgen.1000090
PMCID:
PMC2390767
Abstract Full Text PDF–2.3M Supplementary Material
ArrayWiki: an enabling technology for sharing public microarray data repositories and meta-analyses
Todd H Stokes, JT Torrance, Henry Li, May D Wang
BMC Bioinformatics. 2008; 9(Suppl 6): S18. Published online 2008 May 28. doi: 10.1186/1471-2105-9-S6-S18
PMCID:
PMC2423441
Abstract Full Text PDF–1.9M
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