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Evolutionary dynamics of eukaryotic selenoproteomes: large selenoproteomes may associate with aquatic life and small with terrestrial life
Alexey V Lobanov, Dmitri E Fomenko, Yan Zhang, Aniruddha Sengupta, Dolph L Hatfield, Vadim N Gladyshev
Genome Biol. 2007; 8(9): R198. Published online 2007 September 19. doi: 10.1186/gb-2007-8-9-r198
PMCID:
PMC2375036
Abstract Full Text PDF–587K Supplementary Material

Is Cited by the Following 19 Articles in this Archive:

Composition and Evolution of the Vertebrate and Mammalian Selenoproteomes
Marco Mariotti, Perry G. Ridge, Yan Zhang, Alexei V. Lobanov, Thomas H. Pringle, Roderic Guigo, Dolph L. Hatfield, Vadim N. Gladyshev
PLoS One. 2012; 7(3): e33066. Published online 2012 March 30. doi: 10.1371/journal.pone.0033066
PMCID:
PMC3316567
Abstract Full Text PDF–1.5M Supplementary Material
Selenoprotein K Binds Multiprotein Complexes and Is Involved in the Regulation of Endoplasmic Reticulum Homeostasis
Valentina A. Shchedrina, Robert A. Everley, Yan Zhang, Steven P. Gygi, Dolph L. Hatfield, Vadim N. Gladyshev
J Biol Chem. 2011 December 16; 286(50): 42937–42948. Published online 2011 October 20. doi: 10.1074/jbc.M111.310920
PMCID:
PMC3234841
Free in PMC on 2012/12/16
Comparative Genomics of Trace Element Dependence in Biology
Yan Zhang, Vadim N. Gladyshev
J Biol Chem. 2011 July 8; 286(27): 23623–23629. Published online 2011 May 12. doi: 10.1074/jbc.R110.172833
PMCID:
PMC3129141
Free in PMC on 2012/07/08
Comparative Genomics and Evolution of Molybdenum Utilization
Yan Zhang, Steffen Rump, Vadim N. Gladyshev
Coord Chem Rev. Author manuscript; available in PMC 2012 May 1.
Published in final edited form as: Coord Chem Rev. 2011 May; 255(9-10): 1206–1217. doi: 10.1016/j.ccr.2011.02.016
PMCID:
PMC3311541
Abstract Full Text PDF–1.7M
A 4-Selenocysteine, 2-Selenocysteine Insertion Sequence (SECIS) Element Methionine Sulfoxide Reductase from Metridium senile Reveals a Non-catalytic Function of Selenocysteines
Byung Cheon Lee, Alexey V. Lobanov, Stefano M. Marino, Alaattin Kaya, Javier Seravalli, Dolph L. Hatfield, Vadim N. Gladyshev
J Biol Chem. 2011 May 27; 286(21): 18747–18755. Published online 2011 March 10. doi: 10.1074/jbc.M111.229807
PMCID:
PMC3099691
Abstract Full Text Supplementary Material
Niche of harmful alga Aureococcus anophagefferens revealed through ecogenomics
Christopher J. Gobler, Dianna L. Berry, Sonya T. Dyhrman, Steven W. Wilhelm, Asaf Salamov, Alexei V. Lobanov, Yan Zhang, Jackie L. Collier, Louie L. Wurch, Adam B. Kustka, Brian D. Dill, Manesh Shah, Nathan C. VerBerkmoes, Alan Kuo, Astrid Terry, Jasmyn Pangilinan, Erika A. Lindquist, Susan Lucas, Ian T. Paulsen, Theresa K. Hattenrath-Lehmann, Stephanie C. Talmage, Elyse A. Walker, Florian Koch, Amanda M. Burson, Maria Alejandra Marcoval, Ying-Zhong Tang, Gary R. LeCleir, Kathryn J. Coyne, Gry M. Berg, Erin M. Bertrand, Mak A. Saito, Vadim N. Gladyshev, Igor V. Grigoriev
Proc Natl Acad Sci U S A. 2011 March 15; 108(11): 4352–4357. Published online 2011 February 23. doi: 10.1073/pnas.1016106108
PMCID:
PMC3060233
Abstract Full Text PDF–604K Supplementary Material
Hepatocytes lacking thioredoxin reductase 1 have normal replicative potential during development and regeneration
MaryClare F. Rollins, Dana M. van der Heide, Carla M. Weisend, Jean A. Kundert, Kristin M. Comstock, Elena S. Suvorova, Mario R. Capecchi, Gary F. Merrill, Edward E. Schmidt
J Cell Sci. 2010 July 15; 123(14): 2402–2412. Published online 2010 June 22. doi: 10.1242/jcs.068106
PMCID:
PMC2894656
Abstract Full Text Supplementary Material
Structure–Function Relations, Physiological Roles, and Evolution of Mammalian ER-Resident Selenoproteins
Valentina A. Shchedrina, Yan Zhang, Vyacheslav M. Labunskyy, Dolph L. Hatfield, Vadim N. Gladyshev
Antioxid Redox Signal. 2010 April 1; 12(7): 839–849. doi: 10.1089/ars.2009.2865
PMCID:
PMC2864662
Abstract Full Text PDF–318K
General Trends in Trace Element Utilization Revealed by Comparative Genomic Analyses of Co, Cu, Mo, Ni, and Se
Yan Zhang, Vadim N. Gladyshev
J Biol Chem. 2010 January 29; 285(5): 3393–3405. Published online 2009 November 2. doi: 10.1074/jbc.M109.071746
PMCID:
PMC2823458
Abstract Full Text Supplementary Material
Low Exchangeability of Selenocysteine, the 21st Amino Acid, in Vertebrate Proteins
Sergi Castellano, Aida M. Andrés, Elena Bosch, Mònica Bayes, Roderic Guigó, Andrew G. Clark
Mol Biol Evol. 2009 September; 26(9): 2031–2040. Published online 2009 June 1. doi: 10.1093/molbev/msp109
PMCID:
PMC2734155
Abstract Full Text PDF–294K Supplementary Material
Bioaccumulation and toxicity of selenium compounds in the green alga Scenedesmus quadricauda
Dáša Umysová, Milada Vítová, Irena Doušková, Kateřina Bišová, Monika Hlavová, Mária Čížková, Jiří Machát, Jiří Doucha, Vilém Zachleder
BMC Plant Biol. 2009; 9: 58. Published online 2009 May 15. doi: 10.1186/1471-2229-9-58
PMCID:
PMC2695443
Abstract Full Text PDF–1.7M
A short motif in Drosophila SECIS Binding Protein 2 provides differential binding affinity to SECIS RNA hairpins
Akiko Takeuchi, David Schmitt, Charles Chapple, Elena Babaylova, Galina Karpova, Roderic Guigo, Alain Krol, Christine Allmang
Nucleic Acids Res. 2009 April; 37(7): 2126–2141. Published online 2009 April. doi: 10.1093/nar/gkp078
PMCID:
PMC2673426
Abstract Full Text PDF–9.7M Supplementary Material
SECISaln, a web-based tool for the creation of structure-based alignments of eukaryotic SECIS elements
Charles E. Chapple, Roderic Guigó, Alain Krol
Bioinformatics. 2009 March 1; 25(5): 674–675. Published online 2009 January 29. doi: 10.1093/bioinformatics/btp020
PMCID:
PMC2647825
Abstract Full Text PDF–163K Supplementary Material
Trends in Selenium Utilization in Marine Microbial World Revealed through the Analysis of the Global Ocean Sampling (GOS) Project
Yan Zhang, Vadim N. Gladyshev
PLoS Genet. 2008 June; 4(6): e1000095. Published online 2008 June 13. doi: 10.1371/journal.pgen.1000095
PMCID:
PMC2398784
Abstract Full Text PDF–2.1M Supplementary Material
The Peroxiredoxin and Glutathione Peroxidase Families in Chlamydomonas reinhardtii
Régine Dayer, Beat B. Fischer, Rik I. L. Eggen, Stéphane D. Lemaire
Genetics. 2008 May; 179(1): 41–57. doi: 10.1534/genetics.107.086041
PMCID:
PMC2390619
Abstract Full Text PDF–2.1M
Reduced reliance on the trace element selenium during evolution of mammals
Alexey V Lobanov, Dolph L Hatfield, Vadim N Gladyshev
Genome Biol. 2008; 9(3): R62. Published online 2008 March 31. doi: 10.1186/gb-2008-9-3-r62
PMCID:
PMC2397514
Abstract Full Text PDF–1.8M Supplementary Material
Pond Scum Genomics: The Genomes of Chlamydomonas and Ostreococcus
Graham Peers, Krishna K. Niyogi
Plant Cell. 2008 March; 20(3): 502–507. doi: 10.1105/tpc.107.056556
PMCID:
PMC2329942
Full Text PDF–255K
Comparative Genomic Analyses of Copper Transporters and Cuproproteomes Reveal Evolutionary Dynamics of Copper Utilization and Its Link to Oxygen
Perry G. Ridge, Yan Zhang, Vadim N. Gladyshev
PLoS ONE. 2008; 3(1): e1378. Published online 2008 January 2. doi: 10.1371/journal.pone.0001378
PMCID:
PMC2147054
Abstract Full Text PDF–838K Supplementary Material
Selenoproteinless animals: Selenophosphate synthetase SPS1 functions in a pathway unrelated to selenocysteine biosynthesis
Alexey V. Lobanov, Dolph L. Hatfield, Vadim N. Gladyshev
Protein Sci. 2008 January; 17(1): 176–182. doi: 10.1110/ps.073261508
PMCID:
PMC2144598
Abstract Full Text PDF–186K
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