My NCBISign In
The embryonic muscle transcriptome of Caenorhabditis elegans
Rebecca M Fox, Joseph D Watson, Stephen E Von Stetina, Joan McDermott, Thomas M Brodigan, Tetsunari Fukushige, Michael Krause, David M Miller, III
Genome Biol. 2007; 8(9): R188. Published online 2007 September 12. doi: 10.1186/gb-2007-8-9-r188
PMCID:
PMC2375026
Abstract Full Text PDF–1.3M Supplementary Material

Is Cited by the Following 24 Articles in this Archive:

Cell-type-specific nuclei purification from whole animals for genome-wide expression and chromatin profiling
Florian A. Steiner, Paul B. Talbert, Sivakanthan Kasinathan, Roger B. Deal, Steven Henikoff
Genome Res. 2012 April; 22(4): 766–777. doi: 10.1101/gr.131748.111
PMCID:
PMC3317158
Abstract Full Text PDF–1.3M
The Atypical Calpains: Evolutionary Analyses and Roles in Caenorhabditis elegans Cellular Degeneration
Peter I. Joyce, Rahul Satija, Maozi Chen, Patricia E. Kuwabara
PLoS Genet. 2012 March; 8(3): e1002602. Published online 2012 March 29. doi: 10.1371/journal.pgen.1002602
PMCID:
PMC3315469
Abstract Full Text PDF–2.5M Supplementary Material
Calpains Mediate Integrin Attachment Complex Maintenance of Adult Muscle in Caenorhabditis elegans
Timothy Etheridge, Elizabeth A. Oczypok, Susann Lehmann, Brandon D. Fields, Freya Shephard, Lewis A. Jacobson, Nathaniel J. Szewczyk
PLoS Genet. 2012 January; 8(1): e1002471. Published online 2012 January 12. doi: 10.1371/journal.pgen.1002471
PMCID:
PMC3257289
Abstract Full Text PDF–3.5M Supplementary Material
Caenorhabditis elegans Cyclin D/CDK4 and Cyclin E/CDK2 Induce Distinct Cell Cycle Re-Entry Programs in Differentiated Muscle Cells
Jerome Korzelius, Inge The, Suzan Ruijtenberg, Martine B. W. Prinsen, Vincent Portegijs, Teije C. Middelkoop, Marian J. Groot Koerkamp, Frank C. P. Holstege, Mike Boxem, Sander van den Heuvel
PLoS Genet. 2011 November; 7(11): e1002362. Published online 2011 November 10. doi: 10.1371/journal.pgen.1002362
PMCID:
PMC3213155
Abstract Full Text PDF–664K Supplementary Material
Myogenic Conversion and Transcriptional Profiling of Embryonic Blastomeres in C. elegans
Tetsunari Fukushige, Michael Krause
Methods. Author manuscript; available in PMC 2013 January 1.
Published in final edited form as: Methods. 2012 January; 56(1): 50–54. Published online 2011 October 13. doi: 10.1016/j.ymeth.2011.10.001
PMCID:
PMC3278551
Free in PMC on 2013/01/01
Biochemical and cell biological analysis of actin in the nematode Caenorhabditis elegans
Shoichiro Ono, David Pruyne
Methods. Author manuscript; available in PMC 2013 January 1.
Published in final edited form as: Methods. 2012 January; 56(1): 11–17. Published online 2011 September 16. doi: 10.1016/j.ymeth.2011.09.008
PMCID:
PMC3258461
Free in PMC on 2013/01/01
Determining the Sub-Cellular Localization of Proteins within Caenorhabditis elegans Body Wall Muscle
Barbara Meissner, Teresa Rogalski, Ryan Viveiros, Adam Warner, Lorena Plastino, Adam Lorch, Laure Granger, Laurent Segalat, Donald G. Moerman
PLoS One. 2011; 6(5): e19937. Published online 2011 May 17. doi: 10.1371/journal.pone.0019937
PMCID:
PMC3096668
Abstract Full Text PDF–1.1M Supplementary Material
Isolation and Culture of Larval Cells from C. elegans
Sihui Zhang, Diya Banerjee, Jeffrey R. Kuhn
PLoS One. 2011; 6(4): e19505. Published online 2011 April 29. doi: 10.1371/journal.pone.0019505
PMCID:
PMC3084877
Abstract Full Text PDF–1.5M
A spatial and temporal map of C. elegans gene expression
W. Clay Spencer, Georg Zeller, Joseph D. Watson, Stefan R. Henz, Kathie L. Watkins, Rebecca D. McWhirter, Sarah Petersen, Vipin T. Sreedharan, Christian Widmer, Jeanyoung Jo, Valerie Reinke, Lisa Petrella, Susan Strome, Stephen E. Von Stetina, Menachem Katz, Shai Shaham, Gunnar Rätsch, David M. Miller, III
Genome Res. 2011 February; 21(2): 325–341. doi: 10.1101/gr.114595.110
PMCID:
PMC3032935
Abstract Full Text PDF–2.0M
A Widespread Distribution of Genomic CeMyoD Binding Sites Revealed and Cross Validated by ChIP-Chip and ChIP-Seq Techniques
Haiyan Lei, Tetsunari Fukushige, Wei Niu, Mihail Sarov, Valerie Reinke, Michael Krause
PLoS One. 2010; 5(12): e15898. Published online 2010 December 29. doi: 10.1371/journal.pone.0015898
PMCID:
PMC3012110
Abstract Full Text PDF–747K Supplementary Material
Dynamic Regulation of Sarcomeric Actin Filaments in Striated Muscle
Shoichiro Ono
Cytoskeleton (Hoboken) 2010 November; 67(11): 677–692. Published online 2010 August 9. doi: 10.1002/cm.20476
PMCID:
PMC2963174
Abstract Full Text PDF–335K
Time-lapse imaging and cell-specific expression profiling reveal dynamic branching and molecular determinants of a multi-dendritic nociceptor in C. elegans
Cody J. Smith, Joseph D. Watson, W. Clay Spencer, Tim O’Brien, Byeong Cha, Adi Albeg, Millet Treinin, David M. Miller, III
Dev Biol. Author manuscript; available in PMC 2011 September 1.
Published in final edited form as: Dev Biol. 2010 September 1; 345(1): 18–33. Published online 2010 June 9. doi: 10.1016/j.ydbio.2010.05.502
PMCID:
PMC2919608
Abstract Full Text PDF–3.7M Supplementary Material
Distinct roles of four gelsolin-like domains of Caenorhabditis elegans gelsolin-like protein-1 in actin filament severing, barbed-end capping, and phosphoinositide binding
Zhongmei Liu, Tuula Klaavuniemi, Shoichiro Ono
Biochemistry. Author manuscript; available in PMC 2011 May 25.
Published in final edited form as: Biochemistry. 2010 May 25; 49(20): 4349–4360. doi: 10.1021/bi100215b
PMCID:
PMC2898540
Abstract Full Text PDF–2.7M
GExplore: a web server for integrated queries of protein domains, gene expression and mutant phenotypes
Harald Hutter, Man-Ping Ng, Nansheng Chen
BMC Genomics. 2009; 10: 529. Published online 2009 November 16. doi: 10.1186/1471-2164-10-529
PMCID:
PMC2779824
Abstract Full Text PDF–814K Supplementary Material
A Universal Nonmonotonic Relationship between Gene Compactness and Expression Levels in Multicellular Eukaryotes
Liran Carmel, Eugene V. Koonin
Genome Biol Evol. 2009; 1: 382–390. Published online 2009 September 22. doi: 10.1093/gbe/evp038
PMCID:
PMC2817431
Abstract Full Text PDF–469K Supplementary Material
C. elegans dysferlin homolog fer-1 is expressed in muscle, and fer-1 mutations initiate altered gene expression of muscle enriched genes
Predrag Krajacic, Jane Hermanowski, Olga Lozynska, Tejvir S. Khurana, Todd Lamitina
Physiol Genomics. 2009 December; 40(1): 8–14. Published online 2009 September 15. doi: 10.1152/physiolgenomics.00106.2009
PMCID:
PMC2807209
Abstract Full Text
An ER-resident membrane protein complex regulates nicotinic acetylcholine receptor subunit composition at the synapse
Ruta B Almedom, Jana F Liewald, Guillermina Hernando, Christian Schultheis, Diego Rayes, Jie Pan, Thorsten Schedletzky, Harald Hutter, Cecilia Bouzat, Alexander Gottschalk
EMBO J. 2009 September 2; 28(17): 2636–2649. Published online 2009 July 16. doi: 10.1038/emboj.2009.204
PMCID:
PMC2738700
Abstract Full Text PDF–2.5M Supplementary Material
The NK-2 class homeodomain factor CEH-51 and the T-box factor TBX-35 have overlapping function in C. elegans mesoderm development
Gina Broitman-Maduro, Melissa Owraghi, Wendy W. K. Hung, Steven Kuntz, Paul W. Sternberg, Morris F. Maduro
Development. 2009 August 15; 136(16): 2735–2746. Published online 2009 July 15. doi: 10.1242/dev.038307
PMCID:
PMC2730403
Abstract Full Text
An Integrated Strategy to Study Muscle Development and Myofilament Structure in Caenorhabditis elegans
Barbara Meissner, Adam Warner, Kim Wong, Nicholas Dube, Adam Lorch, Sheldon J. McKay, Jaswinder Khattra, Teresa Rogalski, Aruna Somasiri, Iasha Chaudhry, Rebecca M. Fox, David M. Miller, III, David L. Baillie, Robert A. Holt, Steven J. M. Jones, Marco A. Marra, Donald G. Moerman
PLoS Genet. 2009 June; 5(6): e1000537. Published online 2009 June 26. doi: 10.1371/journal.pgen.1000537
PMCID:
PMC2694363
Abstract Full Text PDF–1.3M Supplementary Material
Global Prediction of Tissue-Specific Gene Expression and Context-Dependent Gene Networks in Caenorhabditis elegans
Maria D. Chikina, Curtis Huttenhower, Coleen T. Murphy, Olga G. Troyanskaya
PLoS Comput Biol. 2009 June; 5(6): e1000417. Published online 2009 June 19. doi: 10.1371/journal.pcbi.1000417
PMCID:
PMC2692103
Abstract Full Text PDF–1.7M Supplementary Material
Caenorhabditis elegans Gelsolin-like Protein 1 Is a Novel Actin Filament-severing Protein with Four Gelsolin-like Repeats
Tuula Klaavuniemi, Sawako Yamashiro, Shoichiro Ono
J Biol Chem. 2008 September 19; 283(38): 26071–26080. doi: 10.1074/jbc.M803618200
PMCID:
PMC2533794
Abstract Full Text
Structure and Evolution of the C. elegans Embryonic Endomesoderm Network
Morris F. Maduro
Biochim Biophys Acta. Author manuscript; available in PMC 2010 April 1.
Published in final edited form as: Biochim Biophys Acta. 2009 April; 1789(4): 250–260. Published online 2008 August 6. doi: 10.1016/j.bbagrm.2008.07.013
PMCID:
PMC2688470
Abstract Full Text PDF–1.5M
Essential role of ADF/cofilin for assembly of contractile actin networks in the C. elegans somatic gonad
Kanako Ono, Sawako Yamashiro, Shoichiro Ono
J Cell Sci. Author manuscript; available in PMC 2009 February 15.
Published in final edited form as: J Cell Sci. 2008 August 15; 121(Pt 16): 2662–2670. Published online 2008 July 24. doi: 10.1242/jcs.034215
PMCID:
PMC2572110
Abstract Full Text PDF–3.2M
Complementary RNA amplification methods enhance microarray identification of transcripts expressed in the C. elegans nervous system
Joseph D Watson, Shenglong Wang, Stephen E Von Stetina, W Clay Spencer, Shawn Levy, Phillip J Dexheimer, Nurith Kurn, Joe Don Heath, David M Miller, III
BMC Genomics. 2008; 9: 84. Published online 2008 February 19. doi: 10.1186/1471-2164-9-84
PMCID:
PMC2263045
Abstract Full Text PDF–2.0M Supplementary Material
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