Cited by ..

An immune response gene expression module identifies a good prognosis subtype in estrogen receptor negative breast cancer

Andrew E Teschendorff, Ahmad Miremadi, Sarah E Pinder, Ian O Ellis, Carlos Caldas

Genome Biol. 2007; 8(8): R157. Published online 2007 August 2. doi: 10.1186/gb-2007-8-8-r157

PMCID:: PMC2374988

Abstract Full Text PDF–1.4M Supplementary Material

Is Cited by the Following 43 Articles in this Archive:

A Gene Signature for Predicting Outcome in Patients with Basal-like Breast Cancer

Robin M. Hallett, Anna Dvorkin-Gheva, Anita Bane, John A. Hassell

Sci Rep. 2012; 2: 227. Published online 2012 January 17. doi: 10.1038/srep00227

PMCID:: PMC3259129

Full Text PDF–752K Supplementary Material

Homogeneous Datasets of Triple Negative Breast Cancers Enable the Identification of Novel Prognostic and Predictive Signatures

Thomas Karn, Lajos Pusztai, Uwe Holtrich, Takayuki Iwamoto, Christine Y. Shiang, Marcus Schmidt, Volkmar Müller, Christine Solbach, Regine Gaetje, Lars Hanker, Andre Ahr, Cornelia Liedtke, Eugen Ruckhäberle, Manfred Kaufmann, Achim Rody

PLoS One. 2011; 6(12): e28403. Published online 2011 December 29. doi: 10.1371/journal.pone.0028403

PMCID:: PMC3248403

Abstract Full Text PDF–761K Supplementary Material

A clinically relevant gene signature in triple negative and basal-like breast cancer

Achim Rody, Thomas Karn, Cornelia Liedtke, Lajos Pusztai, Eugen Ruckhaeberle, Lars Hanker, Regine Gaetje, Christine Solbach, Andre Ahr, Dirk Metzler, Marcus Schmidt, Volkmar Müller, Uwe Holtrich, Manfred Kaufmann

Breast Cancer Res. 2011; 13(5): R97. Published online 2011 October 6. doi: 10.1186/bcr3035

PMCID:: PMC3262210

Abstract Full Text PDF–3.6M Supplementary Material

Kinome expression profiling and prognosis of basal breast cancers

Renaud Sabatier, Pascal Finetti, Emilie Mamessier, Stéphane Raynaud, Nathalie Cervera, Eric Lambaudie, Jocelyne Jacquemier, Patrice Viens, Daniel Birnbaum, François Bertucci

Mol Cancer. 2011; 10: 86. Published online 2011 July 21. doi: 10.1186/1476-4598-10-86

PMCID:: PMC3156788

Abstract Full Text PDF–553K Supplementary Material

Global MicroRNA Expression Profiling Identifies MiR-210 Associated with Tumor Proliferation, Invasion and Poor Clinical Outcome in Breast Cancer

Françoise Rothé, Michail Ignatiadis, Carole Chaboteaux, Benjamin Haibe-Kains, Naïma Kheddoumi, Samira Majjaj, Bassam Badran, Hussein Fayyad-Kazan, Christine Desmedt, Adrian L. Harris, Martine Piccart, Christos Sotiriou

PLoS One. 2011; 6(6): e20980. Published online 2011 June 29. doi: 10.1371/journal.pone.0020980

PMCID:: PMC3126805

Abstract Full Text PDF–1.0M Supplementary Material

Microarrays in the 2010s: the contribution of microarray-based gene expression profiling to breast cancer classification, prognostication and prediction

Pierre-Emmanuel Colombo, Fernanda Milanezi, Britta Weigelt, Jorge S Reis-Filho

Breast Cancer Res. 2011; 13(3): 212. Published online 2011 June 27. doi: 10.1186/bcr2890

PMCID:: PMC3218943

Abstract Full Text PDF–359K

Identification of human triple-negative breast cancer subtypes and preclinical models for selection of targeted therapies

Brian D. Lehmann, Joshua A. Bauer, Xi Chen, Melinda E. Sanders, A. Bapsi Chakravarthy, Yu Shyr, Jennifer A. Pietenpol

J Clin Invest. 2011 July 1; 121(7): 2750–2767. Published online 2011 June 1. doi: 10.1172/JCI45014

PMCID:: PMC3127435

Abstract Full Text PDF–5.4M Supplementary Material

Distinctive Responsiveness to Stromal Signaling Accompanies Histologic Grade Programming of Cancer Cells

Maria Gloria Luciani, Junhee Seok, Aejaz Sayeed, Stacey Champion, William H. Goodson, Stefanie S. Jeffrey, Wenzhong Xiao, Michael Mindrinos, Ronald W. Davis, Shanaz H. Dairkee

PLoS One. 2011; 6(5): e20016. Published online 2011 May 19. doi: 10.1371/journal.pone.0020016

PMCID:: PMC3098270

Abstract Full Text PDF–1.5M Supplementary Material

GOBO: Gene Expression-Based Outcome for Breast Cancer Online

Markus Ringnér, Erik Fredlund, Jari Häkkinen, Åke Borg, Johan Staaf

PLoS One. 2011; 6(3): e17911. Published online 2011 March 21. doi: 10.1371/journal.pone.0017911

PMCID:: PMC3061871

Abstract Full Text PDF–971K Supplementary Material

Do Two Machine-Learning Based Prognostic Signatures for Breast Cancer Capture the Same Biological Processes?

Yotam Drier, Eytan Domany

PLoS One. 2011; 6(3): e17795. Published online 2011 March 14. doi: 10.1371/journal.pone.0017795

PMCID:: PMC3056769

Abstract Full Text PDF–107K Supplementary Material

miRNA-mRNA Integrated Analysis Reveals Roles for miRNAs in Primary Breast Tumors

Espen Enerly, Israel Steinfeld, Kristine Kleivi, Suvi-Katri Leivonen, Miriam R. Aure, Hege G. Russnes, Jo Anders Rønneberg, Hilde Johnsen, Roy Navon, Einar Rødland, Rami Mäkelä, Bjørn Naume, Merja Perälä, Olli Kallioniemi, Vessela N. Kristensen, Zohar Yakhini, Anne-Lise Børresen-Dale

PLoS One. 2011; 6(2): e16915. Published online 2011 February 22. doi: 10.1371/journal.pone.0016915

PMCID:: PMC3043070

Abstract Full Text PDF–2.7M Supplementary Material

Paradoxical relationship between chromosomal instability and survival outcome in cancer

Nicolai J. Birkbak, Aron C. Eklund, Qiyuan Li, Sarah E. McClelland, David Endesfelder, Patrick Tan, Iain B Tan, Andrea L. Richardson, Zoltan Szallasi, Charles Swanton

Cancer Res. Author manuscript; available in PMC 2011 November 15.

Published in final edited form as: Cancer Res. 2011 May 15; 71(10): 3447–3452. Published online 2011 January 26. doi: 10.1158/0008-5472.CAN-10-3667

PMCID:: PMC3096721

Abstract Full Text PDF–404K Supplementary Material

Building prognostic models for breast cancer patients using clinical variables and hundreds of gene expression signatures

Cheng Fan, Aleix Prat, Joel S Parker, Yufeng Liu, Lisa A Carey, Melissa A Troester, Charles M Perou

BMC Med Genomics. 2011; 4: 3. Published online 2011 January 9. doi: 10.1186/1755-8794-4-3

PMCID:: PMC3025826

Abstract Full Text PDF–1.5M Supplementary Material

Prognostic gene network modules in breast cancer hold promise

Andrew E Teschendorff, Yan Jiao, Carlos Caldas

Breast Cancer Res. 2010; 12(6): 317. Published online 2010 December 8. doi: 10.1186/bcr2774

PMCID:: PMC3046436

Abstract Full Text PDF–128K

Gene expression profiles of estrogen receptor positive and estrogen receptor negative breast cancers are detectable in histologically normal breast epithelium

Kelly Graham, Xijin Ge, Antonio de las Morenas, Anusri Tripathi, Carol L. Rosenberg

Clin Cancer Res. Author manuscript; available in PMC 2012 January 15.

Published in final edited form as: Clin Cancer Res. 2011 January 15; 17(2): 236–246. Published online 2010 November 8. doi: 10.1158/1078-0432.CCR-10-1369

PMCID:: PMC3059257

Abstract Full Text PDF–1.4M Supplementary Material

Improved prognostic classification of breast cancer defined by antagonistic activation patterns of immune response pathway modules

Andrew E Teschendorff, Sergio Gomez, Alex Arenas, Dorraya El-Ashry, Marcus Schmidt, Mathias Gehrmann, Carlos Caldas

BMC Cancer. 2010; 10: 604. Published online 2010 November 4. doi: 10.1186/1471-2407-10-604

PMCID:: PMC2991308

Abstract Full Text PDF–1.9M Supplementary Material

A multigene predictor of metastatic outcome in early stage hormone receptor-negative and triple-negative breast cancer

Christina Yau, Laura Esserman, Dan H Moore, Fred Waldman, John Sninsky, Christopher C Benz

Breast Cancer Res. 2010; 12(5): R85. Published online 2010 October 14. doi: 10.1186/bcr2753

PMCID:: PMC3096978

Abstract Full Text PDF–552K Supplementary Material

Analysing breast cancer microarrays from African Americans using shrinkage-based discriminant analysis

Herbert Pang, Keita Ebisu, Emi Watanabe, Laura Y. Sue, Tiejun Tong

Hum Genomics. Author manuscript; available in PMC 2011 October 1.

Published in final edited form as: Hum Genomics. 2010 October; 5(1): 5–16.

PMCID:: PMC3042882

Abstract Full Text PDF–471K

Enumerating the gene sets in breast cancer, a "direct" alternative to hierarchical clustering

Dwain Mefford, Joel A Mefford

BMC Genomics. 2010; 11: 482. Published online 2010 August 23. doi: 10.1186/1471-2164-11-482

PMCID:: PMC2996978

Abstract Full Text PDF–1.2M Supplementary Material

Increased entropy of signal transduction in the cancer metastasis phenotype

Andrew E Teschendorff, Simone Severini

BMC Syst Biol. 2010; 4: 104. Published online 2010 July 30. doi: 10.1186/1752-0509-4-104

PMCID:: PMC2925356

Abstract Full Text PDF–1.2M Supplementary Material

Relationship and prognostic significance of SPARC and VEGF protein expression in colon cancer

Jian-fang Liang, Hong-kun Wang, Hong Xiao, Ning Li, Cai-xia Cheng, Yu-ze Zhao, Yan-bo Ma, Jian-zhong Gao, Rui-bing Bai, Hui-xia Zheng

J Exp Clin Cancer Res. 2010; 29(1): 71. Published online 2010 June 16. doi: 10.1186/1756-9966-29-71

PMCID:: PMC2895582

Abstract Full Text PDF–1.0M

High-resolution genomic and expression analyses of copy number alterations in HER2-amplified breast cancer

Johan Staaf, Göran Jönsson, Markus Ringnér, Johan Vallon-Christersson, Dorthe Grabau, Adalgeir Arason, Haukur Gunnarsson, Bjarni A Agnarsson, Per-Olof Malmström, Oskar Th Johannsson, Niklas Loman, Rosa B Barkardottir, Åke Borg

Breast Cancer Res. 2010; 12(3): R25. Published online 2010 May 6. doi: 10.1186/bcr2568

PMCID:: PMC2917012

Abstract Full Text PDF–2.2M Supplementary Material

Common germ-line polymorphism of C1QA and breast cancer survival

E M Azzato, A J X Lee, A Teschendorff, B A J Ponder, P Pharoah, C Caldas, A T Maia

Br J Cancer. 2010 April 13; 102(8): 1294–1299. Published online 2010 March 23. doi: 10.1038/sj.bjc.6605625

PMCID:: PMC2856004

Abstract Full Text PDF–284K Supplementary Material

A fuzzy gene expression-based computational approach improves breast cancer prognostication

Benjamin Haibe-Kains, Christine Desmedt, Françoise Rothé, Martine Piccart, Christos Sotiriou, Gianluca Bontempi

Genome Biol. 2010; 11(2): R18. Published online 2010 February 15. doi: 10.1186/gb-2010-11-2-r18

PMCID:: PMC2872878

Abstract Full Text PDF–1.4M Supplementary Material

Gene expression profiling integrated into network modelling reveals heterogeneity in the mechanisms of BRCA1 tumorigenesis

R Fernández-Ramires, X Solé, L De Cecco, G Llort, A Cazorla, N Bonifaci, M J Garcia, T Caldés, I Blanco, M Gariboldi, M A Pierotti, M A Pujana, J Benítez, A Osorio

Br J Cancer. 2009 October 20; 101(8): 1469–1480. Published online 2009 October 13. doi: 10.1038/sj.bjc.6605275

PMCID:: PMC2768459

Abstract Full Text PDF–1.4M Supplementary Material

Identification of Novel Kinase Targets for the Treatment of Estrogen Receptor-Negative Breast Cancer

Corey Speers, Anna Tsimelzon, Krystal Sexton, Ashley M. Herrick, Carolina Gutierrez, Aedin Culhane, John Quackenbush, Susan Hilsenbeck, Jenny Chang, Powel Brown

Clin Cancer Res. Author manuscript; available in PMC 2010 October 15.

Published in final edited form as: Clin Cancer Res. 2009 October 15; 15(20): 6327–6340. Published online 2009 October 6. doi: 10.1158/1078-0432.CCR-09-1107