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Correction of technical bias in clinical microarray data improves concordance with known biological information
Aron C Eklund, Zoltan Szallasi
Genome Biol. 2008; 9(2): R26. Published online 2008 February 4. doi: 10.1186/gb-2008-9-2-r26
PMCID:
PMC2374720
Abstract Full Text PDF–943K Supplementary Material
 Is Cited by the Following 11 Articles in this Archive:
Homogeneous Datasets of Triple Negative Breast Cancers Enable the Identification of Novel Prognostic and Predictive Signatures
Thomas Karn, Lajos Pusztai, Uwe Holtrich, Takayuki Iwamoto, Christine Y. Shiang, Marcus Schmidt, Volkmar Müller, Christine Solbach, Regine Gaetje, Lars Hanker, Andre Ahr, Cornelia Liedtke, Eugen Ruckhäberle, Manfred Kaufmann, Achim Rody
PLoS One. 2011; 6(12): e28403. Published online 2011 December 29. doi: 10.1371/journal.pone.0028403
PMCID:
PMC3248403
Abstract Full Text PDF–761K Supplementary Material
Expression cartography of human tissues using self organizing maps
Henry Wirth, Markus Löffler, Martin von Bergen, Hans Binder
BMC Bioinformatics. 2011; 12: 306. Published online 2011 July 27. doi: 10.1186/1471-2105-12-306
PMCID:
PMC3161046
Abstract Full Text PDF–7.9M Supplementary Material
Algorithm-driven Artifacts in median polish summarization of Microarray data
Federico M Giorgi, Anthony M Bolger, Marc Lohse, Bjoern Usadel
BMC Bioinformatics. 2010; 11: 553. Published online 2010 November 11. doi: 10.1186/1471-2105-11-553
PMCID:
PMC2998528
Abstract Full Text PDF–1.3M Supplementary Material
Expression analysis of flavonoid biosynthesis genes during Arabidopsis thaliana silique and seed development with a primary focus on the proanthocyanidin biosynthetic pathway
Christiane Katja Kleindt, Ralf Stracke, Frank Mehrtens, Bernd Weisshaar
BMC Res Notes. 2010; 3: 255. Published online 2010 October 7. doi: 10.1186/1756-0500-3-255
PMCID:
PMC2958888
Abstract Full Text PDF–6.5M Supplementary Material
Independent component analysis: mining microarray data for fundamental human gene expression modules
Jesse M. Engreitz, Bernie J. Daigle, Jr., Jonathan J. Marshall, Russ B. Altman
J Biomed Inform. Author manuscript; available in PMC 2011 December 1.
Published in final edited form as: J Biomed Inform. 2010 December; 43(6): 932–944. Published online 2010 July 7. doi: 10.1016/j.jbi.2010.07.001
PMCID:
PMC2991480
Abstract Full Text PDF–2.3M Supplementary Material
Making Informed Choices about Microarray Data Analysis
Mark Reimers
PLoS Comput Biol. 2010 May; 6(5): e1000786. Published online 2010 May 27. doi: 10.1371/journal.pcbi.1000786
PMCID:
PMC2877726
Full Text PDF–428K Supplementary Material
Using Pre-existing Microarray Datasets to Increase Experimental Power: Application to Insulin Resistance
Bernie J. Daigle, Jr, Alicia Deng, Tracey McLaughlin, Samuel W. Cushman, Margaret C. Cam, Gerald Reaven, Philip S. Tsao, Russ B. Altman
PLoS Comput Biol. 2010 March; 6(3): e1000718. Published online 2010 March 26. doi: 10.1371/journal.pcbi.1000718
PMCID:
PMC2845644
Abstract Full Text PDF–873K Supplementary Material
Systematic Characterisation of Cellular Localisation and Expression Profiles of Proteins Containing MHC Ligands
Agnieszka S. Juncker, Mette V. Larsen, Nils Weinhold, Morten Nielsen, Søren Brunak, Ole Lund
PLoS One. 2009; 4(10): e7448. Published online 2009 October 14. doi: 10.1371/journal.pone.0007448
PMCID:
PMC2758592
Abstract Full Text PDF–393K Supplementary Material
Expression differences by continent of origin point to the immortalization process
Adam R. Davis, Isaac S. Kohane
Hum Mol Genet. 2009 October 15; 18(20): 3864–3875. Published online 2009 July 23. doi: 10.1093/hmg/ddp330
PMCID:
PMC2748894
Abstract Full Text PDF–425K Supplementary Material
Evaluation of Microarray Preprocessing Algorithms Based on Concordance with RT-PCR in Clinical Samples
Balazs Gyorffy, Bela Molnar, Hermann Lage, Zoltan Szallasi, Aron C. Eklund
PLoS ONE. 2009; 4(5): e5645. Published online 2009 May 21. doi: 10.1371/journal.pone.0005645
PMCID:
PMC2680989
Abstract Full Text PDF–265K Supplementary Material
A large-scale analysis of tissue-specific pathology and gene expression of human disease genes and complexes
Kasper Lage, Niclas Tue Hansen, E. Olof Karlberg, Aron C. Eklund, Francisco S. Roque, Patricia K. Donahoe, Zoltan Szallasi, Thomas Skøt Jensen, Søren Brunak
Proc Natl Acad Sci U S A. 2008 December 30; 105(52): 20870–20875. Published online 2008 December 22. doi: 10.1073/pnas.0810772105
PMCID:
PMC2606902
Abstract Full Text PDF–2.2M Supplementary Material
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