pmc logo image
SPACE: an algorithm to predict and quantify alternatively spliced isoforms using microarrays
Miguel A Anton, Dorleta Gorostiaga, Elizabeth Guruceaga, Victor Segura, Pedro Carmona-Saez, Alberto Pascual-Montano, Ruben Pio, Luis M Montuenga, Angel Rubio
Genome Biol. 2008; 9(2): R46. Published online 2008 February 29. doi: 10.1186/gb-2008-9-2-r46
PMCID:
PMC2374713
Abstract Full Text PDF–800K Supplementary Material
 Is Cited by the Following 11 Articles in this Archive:
Comprehensive exon array data processing method for quantitative analysis of alternative spliced variants
Ping Chen, Tatiana Lepikhova, Yizhou Hu, Outi Monni, Sampsa Hautaniemi
Nucleic Acids Res. 2011 October; 39(18): e123. Published online 2011 July 9. doi: 10.1093/nar/gkr513
PMCID:
PMC3185423
Abstract Full Text PDF–2.6M Supplementary Material
NSMAP: A method for spliced isoforms identification and quantification from RNA-Seq
Zheng Xia, Jianguo Wen, Chung-Che Chang, Xiaobo Zhou
BMC Bioinformatics. 2011; 12: 162. Published online 2011 May 16. doi: 10.1186/1471-2105-12-162
PMCID:
PMC3113944
Abstract Full Text PDF–1.4M
Estimation of alternative splicing isoform frequencies from RNA-Seq data
Marius Nicolae, Serghei Mangul, Ion I Măndoiu, Alex Zelikovsky
Algorithms Mol Biol. 2011; 6: 9. Published online 2011 April 19. doi: 10.1186/1748-7188-6-9
PMCID:
PMC3107792
Abstract Full Text PDF–853K
Support vector machines-based identification of alternative splicing in Arabidopsis thaliana from whole-genome tiling arrays
Johannes Eichner, Georg Zeller, Sascha Laubinger, Gunnar Rätsch
BMC Bioinformatics. 2011; 12: 55. Published online 2011 February 16. doi: 10.1186/1471-2105-12-55
PMCID:
PMC3051901
Abstract Full Text PDF–792K Supplementary Material
Improvements to previous algorithms to predict gene structure and isoform concentrations using Affymetrix Exon arrays
Miguel A Anton, Ander Aramburu, Angel Rubio
BMC Bioinformatics. 2010; 11: 578. Published online 2010 November 26. doi: 10.1186/1471-2105-11-578
PMCID:
PMC3012675
Abstract Full Text PDF–904K Supplementary Material
Verifying expressed transcript variants by detecting and assembling stretches of consecutive exons
Tzu-Hung Hsiao, Chien-Hong Lin, Te-Tsui Lee, Ji-Yen Cheng, Pei-Kuen Wei, Eric Y. Chuang, Konan Peck
Nucleic Acids Res. 2010 November; 38(20): e187. Published online 2010 August 26. doi: 10.1093/nar/gkq754
PMCID:
PMC2978383
Abstract Full Text PDF–2.6M Supplementary Material
Development of a novel splice array platform and its application in the identification of alternative splice variants in lung cancer
Ruben Pio, David Blanco, Maria Jose Pajares, Elena Aibar, Olga Durany, Teresa Ezponda, Jackeline Agorreta, Javier Gomez-Roman, Miguel Angel Anton, Angel Rubio, Maria D Lozano, Jose M López-Picazo, Francesc Subirada, Tamara Maes, Luis M Montuenga
BMC Genomics. 2010; 11: 352. Published online 2010 June 3. doi: 10.1186/1471-2164-11-352
PMCID:
PMC2889901
Abstract Full Text PDF–1.2M Supplementary Material
Prediction of alternative isoforms from exon expression levels in RNA-Seq experiments
Hugues Richard, Marcel H. Schulz, Marc Sultan, Asja Nürnberger, Sabine Schrinner, Daniela Balzereit, Emilie Dagand, Axel Rasche, Hans Lehrach, Martin Vingron, Stefan A. Haas, Marie-Laure Yaspo
Nucleic Acids Res. 2010 June; 38(10): e112. Published online 2010 February 11. doi: 10.1093/nar/gkq041
PMCID:
PMC2879520
Abstract Full Text PDF–7.3M Supplementary Material
Identifiability of isoform deconvolution from junction arrays and RNA-Seq
David Hiller, Hui Jiang, Weihong Xu, Wing Hung Wong
Bioinformatics. 2009 December 1; 25(23): 3056–3059. Published online 2009 September 16. doi: 10.1093/bioinformatics/btp544
PMCID:
PMC3167695
Abstract Full Text PDF–208K
Resolving deconvolution ambiguity in gene alternative splicing
Yiyuan She, Earl Hubbell, Hui Wang
BMC Bioinformatics. 2009; 10: 237. Published online 2009 August 4. doi: 10.1186/1471-2105-10-237
PMCID:
PMC2739860
Abstract Full Text PDF–959K
A hierarchical Bayesian model for comparing transcriptomes at the individual transcript isoform level
Sika Zheng, Liang Chen
Nucleic Acids Res. 2009 June; 37(10): e75. Published online 2009 June. doi: 10.1093/nar/gkp282
PMCID:
PMC2691848
Abstract Full Text PDF–1.6M Supplementary Material
You are here: NCBI > Literature > PubMed Central
Write to the Help Desk