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Ancora: a web resource for exploring highly conserved noncoding elements and their association with developmental regulatory genes
Pär G Engström, David Fredman, Boris Lenhard
Genome Biol. 2008; 9(2): R34. Published online 2008 February 15. doi: 10.1186/gb-2008-9-2-r34
PMCID:
PMC2374709
Abstract Full Text PDF–5.1M Supplementary Material
 Is Cited by the Following 15 Articles in this Archive:
Evaluation of the Role of Functional Constraints on the Integrity of an Ultraconserved Region in the Genus Drosophila
Carlos Díaz-Castillo, Xiao-Qin Xia, José M. Ranz
PLoS Genet. 2012 February; 8(2): e1002475. Published online 2012 February 2. doi: 10.1371/journal.pgen.1002475
PMCID:
PMC3271063
Abstract Full Text PDF–975K Supplementary Material
Genome-Wide Association Study Identifies Novel Restless Legs Syndrome Susceptibility Loci on 2p14 and 16q12.1
Juliane Winkelmann, Darina Czamara, Barbara Schormair, Franziska Knauf, Eva C. Schulte, Claudia Trenkwalder, Yves Dauvilliers, Olli Polo, Birgit Högl, Klaus Berger, Andrea Fuhs, Nadine Gross, Karin Stiasny-Kolster, Wolfgang Oertel, Cornelius G. Bachmann, Walter Paulus, Lan Xiong, Jacques Montplaisir, Guy A. Rouleau, Ingo Fietze, Jana Vávrová, David Kemlink, Karel Sonka, Sona Nevsimalova, Siong-Chi Lin, Zbigniew Wszolek, Carles Vilariño-Güell, Matthew J. Farrer, Viola Gschliesser, Birgit Frauscher, Tina Falkenstetter, Werner Poewe, Richard P. Allen, Christopher J. Earley, William G. Ondo, Wei-Dong Le, Derek Spieler, Maria Kaffe, Alexander Zimprich, Johannes Kettunen, Markus Perola, Kaisa Silander, Isabelle Cournu-Rebeix, Marcella Francavilla, Claire Fontenille, Bertrand Fontaine, Pavel Vodicka, Holger Prokisch, Peter Lichtner, Paul Peppard, Juliette Faraco, Emmanuel Mignot, Christian Gieger, Thomas Illig, H.-Erich Wichmann, Bertram Müller-Myhsok, Thomas Meitinger
PLoS Genet. 2011 July; 7(7): e1002171. Published online 2011 July 14. doi: 10.1371/journal.pgen.1002171
Correction in:
PLoS Genet. 2011 August; 7(8): 10.1371/annotation/393ad2d3-df4f-4770-87bc-00bfabf79362.
PMCID:
PMC3136436
Abstract Full Text PDF–667K Supplementary Material Correction
Genomic features and computational identification of human microRNAs under long-range developmental regulation
Ying Sheng, Christopher Previti
BMC Genomics. 2011; 12: 270. Published online 2011 May 27. doi: 10.1186/1471-2164-12-270
PMCID:
PMC3123655
Abstract Full Text PDF–731K Supplementary Material
CASZ1b, the Short Isoform of CASZ1 Gene, Coexpresses with CASZ1a during Neurogenesis and Suppresses Neuroblastoma Cell Growth
Zhihui Liu, Arlene Naranjo, Carol J. Thiele
PLoS One. 2011; 6(4): e18557. Published online 2011 April 7. doi: 10.1371/journal.pone.0018557
PMCID:
PMC3072398
Abstract Full Text PDF–2.1M
Functional conservation of a forebrain enhancer from the elephant shark (Callorhinchus milii ) in zebrafish and mice
Ryan B MacDonald, Mélanie Debiais-Thibaud, Kyle Martin, Luc Poitras, Boon-Hui Tay, Byrappa Venkatesh, Marc Ekker
BMC Evol Biol. 2010; 10: 157. Published online 2010 May 26. doi: 10.1186/1471-2148-10-157
PMCID:
PMC2891724
Abstract Full Text PDF–8.1M Supplementary Material
The Importance of Being Cis: Evolution of Orthologous Fish and Mammalian Enhancer Activity
Deborah I. Ritter, Qiang Li, Dennis Kostka, Katherine S. Pollard, Su Guo, Jeffrey H. Chuang
Mol Biol Evol. 2010 October; 27(10): 2322–2332. Published online 2010 May 21. doi: 10.1093/molbev/msq128
PMCID:
PMC3107594
Abstract Full Text PDF–866K Supplementary Material
Exonic remnants of whole-genome duplication reveal cis-regulatory function of coding exons
Xianjun Dong, Pavla Navratilova, David Fredman, Øyvind Drivenes, Thomas S. Becker, Boris Lenhard
Nucleic Acids Res. 2010 March; 38(4): 1071–1085. Published online 2010 March. doi: 10.1093/nar/gkp1124
PMCID:
PMC2831330
Abstract Full Text PDF–6.5M Supplementary Material
Consolidation of the cancer genome into domains of repressive chromatin by long range epigenetic silencing (LRES) reduces transcriptional plasticity
Marcel W. Coolen, Clare Stirzaker, Jenny Z. Song, Aaron L. Statham, Zena Kassir, Carlos S. Moreno, Andrew N. Young, Vijay Varma, Terence P. Speed, Mark Cowley, Paul Lacaze, Warren Kaplan, Mark D. Robinson, Susan J. Clark
Nat Cell Biol. Author manuscript; available in PMC 2011 March 16.
Published in final edited form as: Nat Cell Biol. 2010 March; 12(3): 235–246. Published online 2010 February 21. doi: 10.1038/ncb2023
PMCID:
PMC3058354
Abstract Full Text PDF–2.0M Supplementary Material
Translog, a web browser for studying the expression divergence of homologous genes
Xianjun Dong, Altuna Akalin, Yogita Sharma, Boris Lenhard
BMC Bioinformatics. 2010; 11(Suppl 1): S59. Published online 2010 January 18. doi: 10.1186/1471-2105-11-S1-S59
PMCID:
PMC3009532
Abstract Full Text PDF–1.0M Supplementary Material
Synorth: exploring the evolution of synteny and long-range regulatory interactions in vertebrate genomes
Xianjun Dong, David Fredman, Boris Lenhard
Genome Biol. 2009; 10(8): R86. Published online 2009 August 21. doi: 10.1186/gb-2009-10-8-r86
PMCID:
PMC2745767
Abstract Full Text PDF–1.3M Supplementary Material
Profile analysis and prediction of tissue-specific CpG island methylation classes
Christopher Previti, Oscar Harari, Igor Zwir, Coral del Val
BMC Bioinformatics. 2009; 10: 116. Published online 2009 April 21. doi: 10.1186/1471-2105-10-116
PMCID:
PMC2683815
Abstract Full Text PDF–861K Supplementary Material
Transcriptional features of genomic regulatory blocks
Altuna Akalin, David Fredman, Erik Arner, Xianjun Dong, Jan Christian Bryne, Harukazu Suzuki, Carsten O Daub, Yoshihide Hayashizaki, Boris Lenhard
Genome Biol. 2009; 10(4): R38. Published online 2009 April 19. doi: 10.1186/gb-2009-10-4-r38
PMCID:
PMC2688929
Abstract Full Text PDF–729K Supplementary Material
PASTAA: identifying transcription factors associated with sets of co-regulated genes
Helge G. Roider, Thomas Manke, Sean O'Keeffe, Martin Vingron, Stefan A. Haas
Bioinformatics. 2009 February 15; 25(4): 435–442. Published online 2008 December 9. doi: 10.1093/bioinformatics/btn627
PMCID:
PMC2642637
Abstract Full Text PDF–344K Supplementary Material
cneViewer: a database of conserved non-coding elements for studies of tissue-specific gene regulation
Jason Persampieri, Deborah I. Ritter, Daniel Lees, Jessica Lehoczky, Qiang Li, Su Guo, Jeffrey H. Chuang
Bioinformatics. 2008 October 15; 24(20): 2418–2419. Published online 2008 August 20. doi: 10.1093/bioinformatics/btn443
PMCID:
PMC2562007
Abstract Full Text PDF–164K
Genome-wide identification of coding and non-coding conserved sequence tags in human and mouse genomes
Flavio Mignone, Anna Anselmo, Giacinto Donvito, Giorgio P Maggi, Giorgio Grillo, Graziano Pesole
BMC Genomics. 2008; 9: 277. Published online 2008 June 11. doi: 10.1186/1471-2164-9-277
PMCID:
PMC2442843
Abstract Full Text PDF–402K
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