My NCBISign In
Growth control of the eukaryote cell: a systems biology study in yeast
Juan I Castrillo, Leo A Zeef, David C Hoyle, Nianshu Zhang, Andrew Hayes, David CJ Gardner, Michael J Cornell, June Petty, Luke Hakes, Leanne Wardleworth, Bharat Rash, Marie Brown, Warwick B Dunn, David Broadhurst, Kerry O'Donoghue, Svenja S Hester, Tom PJ Dunkley, Sarah R Hart, Neil Swainston, Peter Li, Simon J Gaskell, Norman W Paton, Kathryn S Lilley, Douglas B Kell, Stephen G Oliver
J Biol. 2007; 6(2): 4. Published online 2007 April 30. doi: 10.1186/jbiol54
PMCID:
PMC2373899
Abstract Full Text PDF–721K Supplementary Material

Is Cited by the Following 47 Articles in this Archive:

Robust Metabolic Responses to Varied Carbon Sources in Natural and Laboratory Strains of Saccharomyces cerevisiae
Wayne A. Van Voorhies
PLoS One. 2012; 7(1): e30053. Published online 2012 January 9. doi: 10.1371/journal.pone.0030053
PMCID:
PMC3253814
Abstract Full Text PDF–1.0M
Correlation of gene expression and protein production rate - a system wide study
Mikko Arvas, Tiina Pakula, Bart Smit, Jari Rautio, Heini Koivistoinen, Paula Jouhten, Erno Lindfors, Marilyn Wiebe, Merja Penttilä, Markku Saloheimo
BMC Genomics. 2011; 12: 616. Published online 2011 December 20. doi: 10.1186/1471-2164-12-616
PMCID:
PMC3266662
Abstract Full Text PDF–2.7M Supplementary Material
The Global Transcriptional Response of Fission Yeast to Hydrogen Sulfide
Xu Jia, Weizhi He, Alastair I. H. Murchie, Dongrong Chen
PLoS One. 2011; 6(12): e28275. Published online 2011 December 2. doi: 10.1371/journal.pone.0028275
PMCID:
PMC3229568
Abstract Full Text PDF–609K Supplementary Material
Genome-wide analysis of yeast stress survival and tolerance acquisition to analyze the central trade-off between growth rate and cellular robustness
Anna Zakrzewska, Gerco van Eikenhorst, Johanna E. C. Burggraaff, Daniel J. Vis, Huub Hoefsloot, Daniela Delneri, Stephen G. Oliver, Stanley Brul, Gertien J. Smits
Mol Biol Cell. 2011 November 15; 22(22): 4435–4446. doi: 10.1091/mbc.E10-08-0721
PMCID:
PMC3216668
Abstract Full Text PDF–1.7M Supplementary Material
How yeast re-programmes its transcriptional profile in response to different nutrient impulses
Duygu Dikicioglu, Erkan Karabekmez, Bharat Rash, Pınar Pir, Betul Kirdar, Stephen G Oliver
BMC Syst Biol. 2011; 5: 148. Published online 2011 September 25. doi: 10.1186/1752-0509-5-148
PMCID:
PMC3224505
Abstract Full Text PDF–1.8M Supplementary Material
Hunger Artists: Yeast Adapted to Carbon Limitation Show Trade-Offs under Carbon Sufficiency
Jared W. Wenger, Jeffrey Piotrowski, Saisubramanian Nagarajan, Kami Chiotti, Gavin Sherlock, Frank Rosenzweig
PLoS Genet. 2011 August; 7(8): e1002202. Published online 2011 August 4. doi: 10.1371/journal.pgen.1002202
PMCID:
PMC3150441
Abstract Full Text PDF–771K Supplementary Material
Coupling among growth rate response, metabolic cycle, and cell division cycle in yeast
Nikolai Slavov, David Botstein
Mol Biol Cell. 2011 June 15; 22(12): 1997–2009. doi: 10.1091/mbc.E11-02-0132
PMCID:
PMC3113766
Abstract Full Text PDF–3.4M Supplementary Material
The Unfolded Protein Response Is Not Necessary for the G1/S Transition, but It Is Required for Chromosome Maintenance in Saccharomyces cerevisiae
Kelsey A. Henry, Heidi M. Blank, Scott A. Hoose, Michael Polymenis
PLoS One. 2010; 5(9): e12732. Published online 2010 September 14. doi: 10.1371/journal.pone.0012732
PMCID:
PMC2939067
Abstract Full Text PDF–840K Supplementary Material
Aging and the Mammalian Regulatory Triumvirate
C. David Rollo
Aging Dis. 2010 October; 1(2): 105–138. Published online 2010 September 10.
PMCID:
PMC3295031
Abstract Full Text PDF–952K
Evolutionary Systems Biology of Amino Acid Biosynthetic Cost in Yeast
Michael D. Barton, Daniela Delneri, Stephen G. Oliver, Magnus Rattray, Casey M. Bergman
PLoS One. 2010; 5(8): e11935. Published online 2010 August 17. doi: 10.1371/journal.pone.0011935
Correction in:
PLoS One. 2010; 5(10): 10.1371/annotation/b60feca4-9a4f-4311-8a07-4bf16a2f9316.
PMCID:
PMC2923148
Abstract Full Text PDF–283K Supplementary Material Correction
Genomic Binding Profiling of the Fission Yeast Stress-Activated MAPK Sty1 and the bZIP Transcriptional Activator Atf1 in Response to H2O2
Majid Eshaghi, Jong Hoon Lee, Lei Zhu, Suk Yean Poon, Juntao Li, Kwang-Hyun Cho, Zhaoqing Chu, R. Krishna M. Karuturi, Jianhua Liu
PLoS One. 2010; 5(7): e11620. Published online 2010 July 16. doi: 10.1371/journal.pone.0011620
PMCID:
PMC2905393
Abstract Full Text PDF–1.3M Supplementary Material
Glucose Signaling-Mediated Coordination of Cell Growth and Cell Cycle in Saccharomyces Cerevisiae
Stefano Busti, Paola Coccetti, Lilia Alberghina, Marco Vanoni
Sensors (Basel) 2010; 10(6): 6195–6240. Published online 2010 June 21. doi: 10.3390/s100606195
PMCID:
PMC3247754
Abstract Full Text PDF–774K
Reconstruction of the yeast protein-protein interaction network involved in nutrient sensing and global metabolic regulation
Subir K Nandy, Paula Jouhten, Jens Nielsen
BMC Syst Biol. 2010; 4: 68. Published online 2010 May 25. doi: 10.1186/1752-0509-4-68
PMCID:
PMC2889877
Abstract Full Text PDF–3.7M Supplementary Material
Systems-biology dissection of eukaryotic cell growth
Teresa M Przytycka, Justen Andrews
BMC Biol. 2010; 8: 62. Published online 2010 May 24. doi: 10.1186/1741-7007-8-62
PMCID:
PMC2875221
Abstract Full Text PDF–556K
Nutrient control of eukaryote cell growth: a systems biology study in yeast
Alex Gutteridge, Pınar Pir, Juan I Castrillo, Philip D Charles, Kathryn S Lilley, Stephen G Oliver
BMC Biol. 2010; 8: 68. Published online 2010 May 24. doi: 10.1186/1741-7007-8-68
PMCID:
PMC2895586
Abstract Full Text PDF–2.0M Supplementary Material
Tradeoff between enzyme and metabolite efficiency maintains metabolic homeostasis upon perturbations in enzyme capacity
Sarah-Maria Fendt, Joerg Martin Buescher, Florian Rudroff, Paola Picotti, Nicola Zamboni, Uwe Sauer
Mol Syst Biol. 2010; 6: 356. Published online 2010 April 13. doi: 10.1038/msb.2010.11
PMCID:
PMC2872607
Abstract Full Text PDF–1.0M Supplementary Material
Addressing Accuracy and Precision Issues in iTRAQ Quantitation
Natasha A. Karp, Wolfgang Huber, Pawel G. Sadowski, Philip D. Charles, Svenja V. Hester, Kathryn S. Lilley
Mol Cell Proteomics. 2010 September; 9(9): 1885–1897. Published online 2010 April 10. doi: 10.1074/mcp.M900628-MCP200
PMCID:
PMC2938101
Abstract Full Text Supplementary Material
A metabolic signature of long life in Caenorhabditis elegans
Silke Fuchs, Jacob G Bundy, Sarah K Davies, Jonathan M Viney, Jonathan S Swire, Armand M Leroi
BMC Biol. 2010; 8: 14. Published online 2010 February 10. doi: 10.1186/1741-7007-8-14
PMCID:
PMC2829508
Abstract Full Text PDF–1.9M Supplementary Material
Growth-limiting Intracellular Metabolites in Yeast Growing under Diverse Nutrient Limitations
Viktor M. Boer, Christopher A. Crutchfield, Patrick H. Bradley, David Botstein, Joshua D. Rabinowitz
Mol Biol Cell. 2010 January 1; 21(1): 198–211. doi: 10.1091/mbc.E09-07-0597
PMCID:
PMC2801714
Abstract Full Text PDF–1.7M Supplementary Material
The Transcription Activity of Gis1 Is Negatively Modulated by Proteasome-mediated Limited Proteolysis
Nianshu Zhang, Stephen G. Oliver
J Biol Chem. 2010 February 26; 285(9): 6465–6476. Published online 2009 December 18. doi: 10.1074/jbc.M109.073288
PMCID:
PMC2825442
Abstract Full Text Supplementary Material
Growth Landscape Formed by Perception and Import of Glucose in Yeast
Hyun Youk, Alexander van Oudenaarden
Nature. Author manuscript; available in PMC 2010 June 17.
Published in final edited form as: Nature. 2009 December 17; 462(7275): 875–879. doi: 10.1038/nature08653
PMCID:
PMC2796206
Abstract Full Text PDF–2.0M Supplementary Material
Sulfur Metabolism Actively Promotes Initiation of Cell Division in Yeast
Heidi M. Blank, Shefali Gajjar, Andrey Belyanin, Michael Polymenis
PLoS One. 2009; 4(11): e8018. Published online 2009 November 24. doi: 10.1371/journal.pone.0008018
PMCID:
PMC2776973
Abstract Full Text PDF–370K Supplementary Material
Protein kinase A and TORC1 activate genes for ribosomal biogenesis by inactivating repressors encoded by Dot6 and its homolog Tod6
Soyeon I. Lippman, James R. Broach
Proc Natl Acad Sci U S A. 2009 November 24; 106(47): 19928–19933. Published online 2009 November 9. doi: 10.1073/pnas.0907027106
PMCID:
PMC2775034
Abstract Full Text PDF–7.2M Supplementary Material
Reconstruction of the yeast Snf1 kinase regulatory network reveals its role as a global energy regulator
Renata Usaite, Michael C Jewett, Ana Paula Oliveira, John R Yates, III, Lisbeth Olsson, Jens Nielsen
Mol Syst Biol. 2009; 5: 319. Published online 2009 November 3. doi: 10.1038/msb.2009.67
PMCID:
PMC2795470
Abstract Full Text PDF–3.7M Supplementary Material
Circular permutation of ligand-binding module improves dynamic range of genetically encoded FRET-based nanosensor
Satoshi Okada, Kazuhisa Ota, Takashi Ito
Protein Sci. 2009 December; 18(12): 2518–2527. Published online 2009 October 13. doi: 10.1002/pro.266
PMCID:
PMC2821270
Abstract Full Text PDF–804K
Identity of the Growth-Limiting Nutrient Strongly Affects Storage Carbohydrate Accumulation in Anaerobic Chemostat Cultures of Saccharomyces cerevisiae
Lucie A. Hazelwood, Michael C. Walsh, Marijke A. H. Luttik, Pascale Daran-Lapujade, Jack T. Pronk, Jean-Marc Daran
Appl Environ Microbiol. 2009 November; 75(21): 6876–6885. Published online 2009 September 4. doi: 10.1128/AEM.01464-09
PMCID:
PMC2772451
Abstract Full Text PDF–1.1M Supplementary Material
Quantitative Physiology of Saccharomyces cerevisiae at Near-Zero Specific Growth Rates
Léonie G. M. Boender, Erik A. F. de Hulster, Antonius J. A. van Maris, Pascale A. S. Daran-Lapujade, Jack T. Pronk
Appl Environ Microbiol. 2009 September; 75(17): 5607–5614. Published online 2009 July 10. doi: 10.1128/AEM.00429-09
Correction in:
Appl Environ Microbiol. 2009 December; 75(23): 7578.
PMCID:
PMC2737911
Abstract Full Text PDF–176K Correction
Fbh1 Limits Rad51-Dependent Recombination at Blocked Replication Forks
Alexander Lorenz, Fekret Osman, Victoria Folkyte, Sevil Sofueva, Matthew C. Whitby
Mol Cell Biol. 2009 September; 29(17): 4742–4756. Published online 2009 June 22. doi: 10.1128/MCB.00471-09
PMCID:
PMC2725720
Abstract Full Text PDF–2.6M Supplementary Material
The cellular geometry of growth drives the amino acid economy of Caenorhabditis elegans
Jonathan Swire, Silke Fuchs, Jacob G. Bundy, Armand M. Leroi
Proc Biol Sci. 2009 August 7; 276(1668): 2747–2754. Published online 2009 May 13. doi: 10.1098/rspb.2009.0354
PMCID:
PMC2839950
Abstract Full Text PDF–398K
Glucose regulates transcription in yeast through a network of signaling pathways
Shadia Zaman, Soyeon I Lippman, Lisa Schneper, Noam Slonim, James R Broach
Mol Syst Biol. 2009; 5: 245. Published online 2009 February 17. doi: 10.1038/msb.2009.2
Correction in:
Mol Syst Biol. 2009; 5: 257.
PMCID:
PMC2657534
Abstract Full Text PDF–1.9M Supplementary Material Correction
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