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Engineering BioBrick vectors from BioBrick parts
Reshma P Shetty, Drew Endy, Thomas F Knight, Jr
J Biol Eng. 2008; 2: 5. Published online 2008 April 14. doi: 10.1186/1754-1611-2-5
PMCID:
PMC2373286
Abstract Full Text PDF–398K
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 Is Cited by the Following 38 Articles in this Archive:
Prediction by Promoter Logic in Bacterial Quorum Sensing
Navneet Rai, Rajat Anand, Krishna Ramkumar, Varun Sreenivasan, Sugat Dabholkar, K. V. Venkatesh, Mukund Thattai
PLoS Comput Biol. 2012 January; 8(1): e1002361. Published online 2012 January 19. doi: 10.1371/journal.pcbi.1002361
PMCID:
PMC3261908
Abstract Full Text PDF–671K Supplementary Material
Engineering modular and orthogonal genetic logic gates for robust digital-like synthetic biology
Baojun Wang, Richard I Kitney, Nicolas Joly, Martin Buck
Nat Commun. 2011 October 18; 2: 508. doi: 10.1038/ncomms1516
PMCID:
PMC3207208
Abstract Full Text PDF–1.1M Supplementary Material
BglBrick vectors and datasheets: A synthetic biology platform for gene expression
Taek Soon Lee, Rachel A Krupa, Fuzhong Zhang, Meghdad Hajimorad, William J Holtz, Nilu Prasad, Sung Kuk Lee, Jay D Keasling
J Biol Eng. 2011; 5: 12. Published online 2011 September 20. doi: 10.1186/1754-1611-5-12
PMCID:
PMC3189095
Abstract Full Text PDF–1.6M Supplementary Material
A Biobrick Library for Cloning Custom Eukaryotic Plasmids
Marco Constante, Raik Grünberg, Mark Isalan
PLoS One. 2011; 6(8): e23685. Published online 2011 August 25. doi: 10.1371/journal.pone.0023685
PMCID:
PMC3161993
Abstract Full Text PDF–728K Supplementary Material
Characterization of a synthetic bacterial self-destruction device for programmed cell death and for recombinant proteins release
Lorenzo Pasotti, Susanna Zucca, Manuel Lupotto, Maria Gabriella Cusella De Angelis, Paolo Magni
J Biol Eng. 2011; 5: 8. Published online 2011 June 7. doi: 10.1186/1754-1611-5-8
PMCID:
PMC3127821
Abstract Full Text PDF–2.0M
A framework and model system to investigate linear system behavior in Escherichia coli
Meghdad Hajimorad, Paul R Gray, Jay D Keasling
J Biol Eng. 2011; 5: 3. Published online 2011 April 22. doi: 10.1186/1754-1611-5-3
PMCID:
PMC3110104
Abstract Full Text PDF–1.0M
Standard Biological Parts Knowledgebase
Michal Galdzicki, Cesar Rodriguez, Deepak Chandran, Herbert M. Sauro, John H. Gennari
PLoS One. 2011; 6(2): e17005. Published online 2011 February 24. doi: 10.1371/journal.pone.0017005
PMCID:
PMC3044748
Abstract Full Text PDF–1.0M Supplementary Material
Development of an artificial cell, from self-organization to computation and self-reproduction
Vincent Noireaux, Yusuke T. Maeda, Albert Libchaber
Proc Natl Acad Sci U S A. 2011 March 1; 108(9): 3473–3480. Published online 2011 February 11. doi: 10.1073/pnas.1017075108
PMCID:
PMC3048108
Abstract Full Text PDF–1.9M
Introduction of customized inserts for streamlined assembly and optimization of BioBrick synthetic genetic circuits
Julie E Norville, Ratmir Derda, Saurabh Gupta, Kelly A Drinkwater, Angela M Belcher, Andres E Leschziner, Thomas F Knight, Jr
J Biol Eng. 2010; 4: 17. Published online 2010 December 20. doi: 10.1186/1754-1611-4-17
PMCID:
PMC3022552
Abstract Full Text PDF–2.4M Supplementary Material
Construction of a genetic AND gate under a new standard for assembly of genetic parts
Shotaro Ayukawa, Akio Kobayashi, Yusaku Nakashima, Hidemasa Takagi, Shogo Hamada, Masahiko Uchiyama, Katsuyuki Yugi, Satoshi Murata, Yasubumi Sakakibara, Masami Hagiya, Masayuki Yamamura, Daisuke Kiga
BMC Genomics. 2010; 11(Suppl 4): S16. Published online 2010 December 2. doi: 10.1186/1471-2164-11-S4-S16
PMCID:
PMC3005925
Abstract Full Text PDF–597K
A nucleoside kinase as a dual selector for genetic switches and circuits
Yohei Tashiro, Hiroki Fukutomi, Kei Terakubo, Kyoichi Saito, Daisuke Umeno
Nucleic Acids Res. 2011 February; 39(3): e12. Published online 2010 November 9. doi: 10.1093/nar/gkq1070
PMCID:
PMC3035434
Abstract Full Text PDF–3.2M Supplementary Material
Rational Design of a Plasmid Origin That Replicates Efficiently in Both Gram-Positive and Gram-Negative Bacteria
Anton V. Bryksin, Ichiro Matsumura
PLoS One. 2010; 5(10): e13244. Published online 2010 October 8. doi: 10.1371/journal.pone.0013244
PMCID:
PMC2951906
Abstract Full Text PDF–1.8M
Design, construction and characterization of a set of insulated bacterial promoters
Joseph H. Davis, Adam J. Rubin, Robert T. Sauer
Nucleic Acids Res. 2011 February; 39(3): 1131–1141. Published online 2010 September 15. doi: 10.1093/nar/gkq810
PMCID:
PMC3035448
Abstract Full Text PDF–520K
Synthetic biology: A foundation for multi-scale molecular biology
Adam G Bower, Maria K McClintock, Stephen S Fong
Bioeng Bugs. 2010 Sep-Oct; 1(5): 309–312. doi: 10.4161/bbug.1.5.12391
PMCID:
PMC3037580
Abstract Full Text PDF–586K
A synthetic three-color scaffold for monitoring genetic regulation and noise
Robert Sidney Cox, III, Mary J Dunlop, Michael B Elowitz
J Biol Eng. 2010; 4: 10. Published online 2010 July 21. doi: 10.1186/1754-1611-4-10
PMCID:
PMC2918530
Abstract Full Text PDF–1.0M Supplementary Material
A computational study of liposome logic: towards cellular computing from the bottom up
James Smaldon, Francisco J. Romero-Campero, Francisco Fernández Trillo, Marian Gheorghe, Cameron Alexander, Natalio Krasnogor
Syst Synth Biol. 2010 September; 4(3): 157–179. Published online 2010 July 18. doi: 10.1007/s11693-010-9060-5
PMCID:
PMC2955200
Abstract Full Text PDF–4.3M
The synthetic integron: an in vivo genetic shuffling device
David Bikard, Stéphane Julié-Galau, Guillaume Cambray, Didier Mazel
Nucleic Acids Res. 2010 August; 38(15): e153. Published online 2010 June 9. doi: 10.1093/nar/gkq511
PMCID:
PMC2926619
Abstract Full Text PDF–3.3M Supplementary Material
A selection that reports on protein–protein interactions within a thermophilic bacterium
Peter Q. Nguyen, Jonathan J. Silberg
Protein Eng Des Sel. 2010 July; 23(7): 529–536. Published online 2010 April 23. doi: 10.1093/protein/gzq024
PMCID:
PMC2920301
Abstract Full Text PDF–325K Supplementary Material
Strategies for protein synthetic biology
Raik Grünberg, Luis Serrano
Nucleic Acids Res. 2010 May; 38(8): 2663–2675. Published online 2010 April 10. doi: 10.1093/nar/gkq139
PMCID:
PMC2860127
Abstract Full Text PDF–4.2M
In-Fusion BioBrick assembly and re-engineering
Sean C. Sleight, Bryan A. Bartley, Jane A. Lieviant, Herbert M. Sauro
Nucleic Acids Res. 2010 May; 38(8): 2624–2636. Published online 2010 April 10. doi: 10.1093/nar/gkq179
PMCID:
PMC2860134
Abstract Full Text PDF–4.3M
Algorithms for automated DNA assembly
Douglas Densmore, Timothy H.-C. Hsiau, Joshua T. Kittleson, Will DeLoache, Christopher Batten, J. Christopher Anderson
Nucleic Acids Res. 2010 May; 38(8): 2607–2616. Published online 2010 March 23. doi: 10.1093/nar/gkq165
PMCID:
PMC2860133
Abstract Full Text PDF–346K Supplementary Material
Design and characterization of molecular tools for a Synthetic Biology approach towards developing cyanobacterial biotechnology
Hsin-Ho Huang, Daniel Camsund, Peter Lindblad, Thorsten Heidorn
Nucleic Acids Res. 2010 May; 38(8): 2577–2593. Published online 2010 March 17. doi: 10.1093/nar/gkq164
PMCID:
PMC2860132
Abstract Full Text PDF–8.5M
Toward Design-based Engineering of Industrial Microbes
Keith EJ Tyo, Kanokarn Kocharin, Jens Nielsen
Curr Opin Microbiol. Author manuscript; available in PMC 2011 June 1.
Published in final edited form as: Curr Opin Microbiol. 2010 June; 13(3): 255–262. Published online 2010 March 11. doi: 10.1016/j.mib.2010.02.001
PMCID:
PMC2885540
Abstract Full Text PDF–1.1M
Building blocks for protein interaction devices
Raik Grünberg, Tony S. Ferrar, Almer M. van der Sloot, Marco Constante, Luis Serrano
Nucleic Acids Res. 2010 May; 38(8): 2645–2662. Published online 2010 March 9. doi: 10.1093/nar/gkq152
PMCID:
PMC2860130
Abstract Full Text PDF–4.4M Supplementary Material
BglBricks: A flexible standard for biological part assembly
J Christopher Anderson, John E Dueber, Mariana Leguia, Gabriel C Wu, Jonathan A Goler, Adam P Arkin, Jay D Keasling
J Biol Eng. 2010; 4: 1. Published online 2010 January 20. doi: 10.1186/1754-1611-4-1
PMCID:
PMC2822740
Abstract Full Text PDF–568K
Flipping DNA to Generate and Regulate Microbial Consortia
Rohini Ramadas, Mukund Thattai
Genetics. 2010 January; 184(1): 285–293. doi: 10.1534/genetics.109.105999
PMCID:
PMC2800055
Abstract Full Text PDF–1.4M
Laws of biology: why so few?
Pawan K. Dhar, Alessandro Giuliani
Syst Synth Biol. 2010 March; 4(1): 7–13. Published online 2009 December 29. doi: 10.1007/s11693-009-9049-0
PMCID:
PMC2816229
Abstract Full Text PDF–201K
Engineering Multigene Expression In Vitro and In Vivo With Small Terminators for T7 RNA Polymerase
Liping Du, Rong Gao, Anthony C. Forster
Biotechnol Bioeng. Author manuscript; available in PMC 2010 December 15.
Published in final edited form as: Biotechnol Bioeng. 2009 December 15; 104(6): 1189–1196. doi: 10.1002/bit.22491
PMCID:
PMC2783478
Abstract Full Text PDF–2.2M Supplementary Material
Next-Generation Synthetic Gene Networks
Timothy K. Lu, Ahmad S. Khalil, James J. Collins
Nat Biotechnol. Author manuscript; available in PMC 2010 June 1.
Published in final edited form as: Nat Biotechnol. 2009 December; 27(12): 1139–1150. doi: 10.1038/nbt.1591
PMCID:
PMC2796205
Abstract Full Text PDF–1.8M
TinkerCell: modular CAD tool for synthetic biology
Deepak Chandran, Frank T Bergmann, Herbert M Sauro
J Biol Eng. 2009; 3: 19. Published online 2009 October 29. doi: 10.1186/1754-1611-3-19
PMCID:
PMC2776589
Abstract Full Text PDF–1.4M Supplementary Material
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