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Engineering BioBrick vectors from BioBrick parts
Reshma P Shetty, Drew Endy, Thomas F Knight, Jr
J Biol Eng. 2008; 2: 5. Published online 2008 April 14. doi: 10.1186/1754-1611-2-5
PMCID:
PMC2373286
Abstract Full Text PDF–398K

Is Cited by the Following 47 Articles in this Archive:

A Multi-Platform Flow Device for Microbial (Co-) Cultivation and Microscopic Analysis
Matthijn C. Hesselman, Dorett I. Odoni, Brendan M. Ryback, Suzette de Groot, Ruben G. A. van Heck, Jaap Keijsers, Pim Kolkman, David Nieuwenhuijse, Youri M. van Nuland, Erik Sebus, Rob Spee, Hugo de Vries, Marten T. Wapenaar, Colin J. Ingham, Karin Schroën, Vítor A. P. Martins dos Santos, Sebastiaan K. Spaans, Floor Hugenholtz, Mark W. J. van Passel
PLoS One. 2012; 7(5): e36982. Published online 2012 May 14. doi: 10.1371/journal.pone.0036982
PMCID:
PMC3351485
Abstract Full Text PDF–634K Supplementary Material
Rerouting Carbon Flux To Enhance Photosynthetic Productivity
Daniel C. Ducat, J. Abraham Avelar-Rivas, Jeffrey C. Way, Pamela A. Silver
Appl Environ Microbiol. 2012 April; 78(8): 2660–2668. doi: 10.1128/AEM.07901-11
PMCID:
PMC3318813
Free in PMC on 2012/10/01
Characterization of an inducible promoter in different DNA copy number conditions
Susanna Zucca, Lorenzo Pasotti, Giuliano Mazzini, Maria Gabriella Cusella De Angelis, Paolo Magni
BMC Bioinformatics. 2012; 13(Suppl 4): S11. Published online 2012 March 28. doi: 10.1186/1471-2105-13-S4-S11
PMCID:
PMC3314568
Abstract Full Text PDF–1018K Supplementary Material
Engineered Protein Nano-Compartments for Targeted Enzyme Localization
Swati Choudhary, Maureen B. Quin, Mark A. Sanders, Ethan T. Johnson, Claudia Schmidt-Dannert
PLoS One. 2012; 7(3): e33342. Published online 2012 March 12. doi: 10.1371/journal.pone.0033342
PMCID:
PMC3299773
Abstract Full Text PDF–1.2M Supplementary Material
DeviceEditor visual biological CAD canvas
Joanna Chen, Douglas Densmore, Timothy S Ham, Jay D Keasling, Nathan J Hillson
J Biol Eng. 2012; 6: 1. Published online 2012 February 28. doi: 10.1186/1754-1611-6-1
PMCID:
PMC3317443
Abstract Full Text PDF–3.5M Supplementary Material
Prediction by Promoter Logic in Bacterial Quorum Sensing
Navneet Rai, Rajat Anand, Krishna Ramkumar, Varun Sreenivasan, Sugat Dabholkar, K. V. Venkatesh, Mukund Thattai
PLoS Comput Biol. 2012 January; 8(1): e1002361. Published online 2012 January 19. doi: 10.1371/journal.pcbi.1002361
PMCID:
PMC3261908
Abstract Full Text PDF–671K Supplementary Material
Expression Vectors for Acinetobacter baylyi ADP1
Charles Daniel Murin, Kristy Segal, Anton Bryksin, Ichiro Matsumura
Appl Environ Microbiol. 2012 January; 78(1): 280–283. doi: 10.1128/AEM.05597-11
PMCID:
PMC3255645
Free in PMC on 2012/07/01
Amplified insert assembly: an optimized approach to standard assembly of BioBrickTM genetic circuits
Michael A Speer, Tom L Richard
J Biol Eng. 2011; 5: 17. Published online 2011 December 16. doi: 10.1186/1754-1611-5-17
PMCID:
PMC3287150
Abstract Full Text PDF–1.1M Supplementary Material
Expression optimization and synthetic gene networks in cell-free systems
David K. Karig, Sukanya Iyer, Michael L. Simpson, Mitchel J. Doktycz
Nucleic Acids Res. 2012 April; 40(8): 3763–3774. Published online 2011 December 16. doi: 10.1093/nar/gkr1191
PMCID:
PMC3333853
Abstract Full Text PDF–1.7M Supplementary Material
DNA-guided assembly of biosynthetic pathways promotes improved catalytic efficiency
Robert J. Conrado, Gabriel C. Wu, Jason T. Boock, Hansen Xu, Susan Y. Chen, Tina Lebar, Jernej Turnšek, Nejc Tomšič, Monika Avbelj, Rok Gaber, Tomaž Koprivnjak, Jerneja Mori, Vesna Glavnik, Irena Vovk, Mojca Benčina, Vesna Hodnik, Gregor Anderluh, John E. Dueber, Roman Jerala, Matthew P. DeLisa
Nucleic Acids Res. 2012 February; 40(4): 1879–1889. Published online 2011 October 22. doi: 10.1093/nar/gkr888
PMCID:
PMC3287197
Abstract Full Text PDF–614K Supplementary Material
Engineering modular and orthogonal genetic logic gates for robust digital-like synthetic biology
Baojun Wang, Richard I Kitney, Nicolas Joly, Martin Buck
Nat Commun. 2011 October 18; 2: 508. doi: 10.1038/ncomms1516
PMCID:
PMC3207208
Abstract Full Text PDF–1.1M Supplementary Material
BglBrick vectors and datasheets: A synthetic biology platform for gene expression
Taek Soon Lee, Rachel A Krupa, Fuzhong Zhang, Meghdad Hajimorad, William J Holtz, Nilu Prasad, Sung Kuk Lee, Jay D Keasling
J Biol Eng. 2011; 5: 12. Published online 2011 September 20. doi: 10.1186/1754-1611-5-12
PMCID:
PMC3189095
Abstract Full Text PDF–1.6M Supplementary Material
A Biobrick Library for Cloning Custom Eukaryotic Plasmids
Marco Constante, Raik Grünberg, Mark Isalan
PLoS One. 2011; 6(8): e23685. Published online 2011 August 25. doi: 10.1371/journal.pone.0023685
PMCID:
PMC3161993
Abstract Full Text PDF–728K Supplementary Material
Characterization of a synthetic bacterial self-destruction device for programmed cell death and for recombinant proteins release
Lorenzo Pasotti, Susanna Zucca, Manuel Lupotto, Maria Gabriella Cusella De Angelis, Paolo Magni
J Biol Eng. 2011; 5: 8. Published online 2011 June 7. doi: 10.1186/1754-1611-5-8
PMCID:
PMC3127821
Abstract Full Text PDF–2.0M
A framework and model system to investigate linear system behavior in Escherichia coli
Meghdad Hajimorad, Paul R Gray, Jay D Keasling
J Biol Eng. 2011; 5: 3. Published online 2011 April 22. doi: 10.1186/1754-1611-5-3
PMCID:
PMC3110104
Abstract Full Text PDF–1.0M
Standard Biological Parts Knowledgebase
Michal Galdzicki, Cesar Rodriguez, Deepak Chandran, Herbert M. Sauro, John H. Gennari
PLoS One. 2011; 6(2): e17005. Published online 2011 February 24. doi: 10.1371/journal.pone.0017005
PMCID:
PMC3044748
Abstract Full Text PDF–1.0M Supplementary Material
Development of an artificial cell, from self-organization to computation and self-reproduction
Vincent Noireaux, Yusuke T. Maeda, Albert Libchaber
Proc Natl Acad Sci U S A. 2011 March 1; 108(9): 3473–3480. Published online 2011 February 11. doi: 10.1073/pnas.1017075108
PMCID:
PMC3048108
Abstract Full Text PDF–1.9M
Introduction of customized inserts for streamlined assembly and optimization of BioBrick synthetic genetic circuits
Julie E Norville, Ratmir Derda, Saurabh Gupta, Kelly A Drinkwater, Angela M Belcher, Andres E Leschziner, Thomas F Knight, Jr
J Biol Eng. 2010; 4: 17. Published online 2010 December 20. doi: 10.1186/1754-1611-4-17
PMCID:
PMC3022552
Abstract Full Text PDF–2.4M Supplementary Material
Construction of a genetic AND gate under a new standard for assembly of genetic parts
Shotaro Ayukawa, Akio Kobayashi, Yusaku Nakashima, Hidemasa Takagi, Shogo Hamada, Masahiko Uchiyama, Katsuyuki Yugi, Satoshi Murata, Yasubumi Sakakibara, Masami Hagiya, Masayuki Yamamura, Daisuke Kiga
BMC Genomics. 2010; 11(Suppl 4): S16. Published online 2010 December 2. doi: 10.1186/1471-2164-11-S4-S16
PMCID:
PMC3005925
Abstract Full Text PDF–597K
A nucleoside kinase as a dual selector for genetic switches and circuits
Yohei Tashiro, Hiroki Fukutomi, Kei Terakubo, Kyoichi Saito, Daisuke Umeno
Nucleic Acids Res. 2011 February; 39(3): e12. Published online 2010 November 9. doi: 10.1093/nar/gkq1070
PMCID:
PMC3035434
Abstract Full Text PDF–3.2M Supplementary Material
Rational Design of a Plasmid Origin That Replicates Efficiently in Both Gram-Positive and Gram-Negative Bacteria
Anton V. Bryksin, Ichiro Matsumura
PLoS One. 2010; 5(10): e13244. Published online 2010 October 8. doi: 10.1371/journal.pone.0013244
PMCID:
PMC2951906
Abstract Full Text PDF–1.8M
Design, construction and characterization of a set of insulated bacterial promoters
Joseph H. Davis, Adam J. Rubin, Robert T. Sauer
Nucleic Acids Res. 2011 February; 39(3): 1131–1141. Published online 2010 September 15. doi: 10.1093/nar/gkq810
PMCID:
PMC3035448
Abstract Full Text PDF–520K
Synthetic biology: A foundation for multi-scale molecular biology
Adam G Bower, Maria K McClintock, Stephen S Fong
Bioeng Bugs. 2010 Sep-Oct; 1(5): 309–312. doi: 10.4161/bbug.1.5.12391
PMCID:
PMC3037580
Abstract Full Text PDF–586K
A synthetic three-color scaffold for monitoring genetic regulation and noise
Robert Sidney Cox, III, Mary J Dunlop, Michael B Elowitz
J Biol Eng. 2010; 4: 10. Published online 2010 July 21. doi: 10.1186/1754-1611-4-10
PMCID:
PMC2918530
Abstract Full Text PDF–1.0M Supplementary Material
A computational study of liposome logic: towards cellular computing from the bottom up
James Smaldon, Francisco J. Romero-Campero, Francisco Fernández Trillo, Marian Gheorghe, Cameron Alexander, Natalio Krasnogor
Syst Synth Biol. 2010 September; 4(3): 157–179. Published online 2010 July 18. doi: 10.1007/s11693-010-9060-5
PMCID:
PMC2955200
Abstract Full Text PDF–4.3M
The synthetic integron: an in vivo genetic shuffling device
David Bikard, Stéphane Julié-Galau, Guillaume Cambray, Didier Mazel
Nucleic Acids Res. 2010 August; 38(15): e153. Published online 2010 June 9. doi: 10.1093/nar/gkq511
PMCID:
PMC2926619
Abstract Full Text PDF–3.3M Supplementary Material
A selection that reports on protein–protein interactions within a thermophilic bacterium
Peter Q. Nguyen, Jonathan J. Silberg
Protein Eng Des Sel. 2010 July; 23(7): 529–536. Published online 2010 April 23. doi: 10.1093/protein/gzq024
PMCID:
PMC2920301
Abstract Full Text PDF–325K Supplementary Material
Strategies for protein synthetic biology
Raik Grünberg, Luis Serrano
Nucleic Acids Res. 2010 May; 38(8): 2663–2675. Published online 2010 April 10. doi: 10.1093/nar/gkq139
PMCID:
PMC2860127
Abstract Full Text PDF–4.2M
In-Fusion BioBrick assembly and re-engineering
Sean C. Sleight, Bryan A. Bartley, Jane A. Lieviant, Herbert M. Sauro
Nucleic Acids Res. 2010 May; 38(8): 2624–2636. Published online 2010 April 10. doi: 10.1093/nar/gkq179
PMCID:
PMC2860134
Abstract Full Text PDF–4.3M
Algorithms for automated DNA assembly
Douglas Densmore, Timothy H.-C. Hsiau, Joshua T. Kittleson, Will DeLoache, Christopher Batten, J. Christopher Anderson
Nucleic Acids Res. 2010 May; 38(8): 2607–2616. Published online 2010 March 23. doi: 10.1093/nar/gkq165
PMCID:
PMC2860133
Abstract Full Text PDF–346K Supplementary Material
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