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Copyright © 2008, American Society for Microbiology Pseudomonas aeruginosa Cystic Fibrosis Isolates from Individual Patients Demonstrate a Range of Levels of Lethality in Two Drosophila melanogaster Infection Models Departments of Biological Sciences,1 Microbiology and Infectious Diseases,2 Medicine, University of Calgary, Calgary, Alberta T2N 1N4, Canada,3 Foothills Medical Centre, Calgary, Alberta T2N 4N1, Canada4 *Corresponding author. Mailing address: Department of Biological Sciences, University of Calgary, 2500 University Dr., N.W., Calgary, Alberta T2N 1N4, Canada. Phone: (403) 220-5274. Fax: (403) 289-9311. E-mail: storey/at/ucalgary.ca Received August 21, 2007; Revised November 22, 2007; Accepted February 6, 2008. Abstract Recently, two Drosophila melanogaster models of infection, fly feeding and fly nicking, have been developed that allow a determination of pathogenic potential of Pseudomonas aeruginosa isolates. In this study, control strains, isolates from burn wounds, and isolates from the sputa of cystic fibrosis (CF) patients were used to compare the two infection models to determine whether any of the isolates might be better adapted to either of the models. In addition, our goal was to determine the variability of isolates from individual CF patients. Three of four control strains (PAO1, PAK, and PA14) caused significant mortality in the flies in both models of infection. The remaining control strain, PA103, was lethal to flies in the nicking model but lacked significant lethality in the feeding model. The burn wound isolates had a high level of lethality in both models. Interestingly, the CF isolates had the largest diversity of lethality in both models of infection. The range of pathogenic potentials of the CF isolates occurred across a cohort of patients, both at the patient level and down to the level of individual sputum samples. The majority of all isolates had similar levels of lethality in both fly infection models. However, two CF isolates were significantly more lethal in the nicking model, and three CF isolates were significantly more lethal in the feeding model. In conclusion, the two Drosophila infection models were useful for the analysis of the diversity of pathogenic potentials of P. aeruginosa isolates. Pseudomonas aeruginosa is a ubiquitous opportunistic pathogen that can infect virtually any tissue (26). It is an important pathogen in lung infections, especially the chronic lung infections associated with cystic fibrosis (CF), burn wound infections, and eye infections (26). In CF patients P. aeruginosa accounts for nearly 60% of the lung infections (1) and contributes significantly to the morbidity and mortality of the disease (11). Individuals as young as 3 years of age can acquire P. aeruginosa, resulting in the obstruction of small airways and bronchiolar inflammation (4). Once the lungs are colonized, the infections tend to become chronic in nature. P. aeruginosa isolates from early CF infections are similar to environmental isolates in phenotype. However, P. aeruginosa isolates from chronic CF lung infections are phenotypically quite distinct from those causing acute infections in other settings (29). The phenotypic variation of CF isolates may arise from the development of mutator strains during the chronic infection (30) or as a result of adaptation to the harsh environmental conditions of the lung (38). The specific adaptations by P. aeruginosa to the CF lung environment include the ability to grow as a biofilm (20), development of a mucoid phenotype (17), and the loss of virulence (38). Other phenotypic variation can also occur. For example, isolates from prolonged infections are more resistant to antibiotics (17); there is the loss of O-side chains on lipopolysaccharide, making the strains nonreactive with typing sera (14); a distinctive acylation of lipopolysaccharide (14); and the loss of flagellum-dependent motility (6, 27). These characteristics appear to be selected within CF airways and tend to occur increasingly with long-term infections. Genotypic diversity has also been observed in CF isolates. For instance, the presence of multiple genotypes of P. aeruginosa and the persistence of the same bacterial lineage with some variation has been well documented in chronic infections of CF patients (34). Recent studies suggest that this bacterial genotypic diversity may be due to conditions in the lung which select for loss-of-function mutations (38). Taken together, these phenotypic and genotypic changes may allow P. aeruginosa to adapt in order to persist in the lungs of patients with CF. There have been a number of different infection models adapted to the study of P. aeruginosa pathogenesis. The most commonly used animal models include the mouse and the rat, which mimic either chronic or acute infections (5, 39). Alternative model hosts have also been explored. A positive correlation between insect and mouse models for studying P. aeruginosa virulence was found, suggesting that insect models are a reasonable alternative to traditional animal models (19). Boman et al. (3) was the first to demonstrate that P. aeruginosa is exceptionally virulent in Drosophila melanogaster (3); subsequently, the model has been adapted to study the bacterium's pathogenic potential (9). There have been two different models of bacterial infection used in D. melanogaster. The fly nicking model, which may represent an acute infection, involves pricking flies with a needle dipped into bacterial culture. Subsequently, the bacteria grow exponentially even after fly death has occurred (9). The second model, fly feeding, involves feeding starved flies with bacterial cultures and represents a longer-term infection model (8). Our hypothesis was that P. aeruginosa isolates from chronic CF lung infections may be better adapted to the fly feeding model than the fly nicking model since the former may be a slower and more drawn out infection. Furthermore, we hypothesized that isolates from acute infections, such as burn wounds, might be better adapted to the fly nicking model of infection. The present study assessed the infectivity of P. aeruginosa control strains, CF isolates, and burn wound isolates in the two D. melanogaster infection models in order to determine the variability of pathogenic potential between the different isolates. MATERIALS AND METHODS Strains and growth conditions. P. aeruginosa strains and isolates were cultured with aeration at 37°C in Luria-Bertani (LB) broth or brain heart infusion (BHI) broth (Difco). Strains used in the present study were PAO1, the prototypical strain (18); PAK (41); ATCC 27853, a blood culture isolate from a burn wound infection (28); and Utah3 and Utah4, which were isolated from invasive burn wound infections. PA14, a human isolate, was initially designated UCBPP-PA14 and is virulent in both a mouse full-skin-thickness burn infection model and an Arabidopsis thaliana leaf infiltration model (32). PA103, a hypertoxigenic strain, was initially isolated by Liu (25). CF isolates were provided courtesy of the University of Calgary Medical Clinic or the Adult Cystic Fibrosis Clinic at the Foothills Hospital, Calgary, Alberta, Canada. Voluntary consent was given by all patients for participation in these studies. Approval of the design and purpose of the present study was granted by the Conjoint Research Ethics Board of the University of Calgary. CF P. aeruginosa isolates 4384, 5154, and 5166 were previously reported by Raivio et al. (33); isolates 5552, 5585, and 5588 were previously reported by Gallant et al. (15) and isolates 6106 and 14655 were previously reported by Erickson et al. (12). Maintenance of D. melanogaster. D. melanogaster Oregon R flies were maintained as described in Chugani et al. (8). Flies were maintained at 27°C on standard cornmeal agar. D. melanogaster feeding assays. D. melanogaster flies were infected orally as described by Chugani et al. (8). For fly feeding assays, flies were anesthetized by using a cold tile; 3- to 5-day-old male flies were then separated into vials (10 per vial) and starved without food or water for 5 h. In parallel, 2.3-cm Whatman filter disks were placed into fly vials containing 6 ml of 5% sucrose agar. After overnight growth in BHI, 2 ml of bacterial culture was normalized to an optical density at 600 nm of 3.0 and centrifuged, and the resulting pellet was resuspended in 175 μl of sterile 5% sucrose and then added onto filters in the sucrose feeding vials. Vials inoculated with 175 μl of 5% sucrose were used as negative controls in each experiment. Starved flies were transferred to the sucrose feeding vials containing bacterial suspensions and incubated at 27°C with moderate humidity. Fly mortality was monitored daily for 14 days, and each isolate was tested in triplicate. D. melanogaster nicking assays. Healthy 2- to 4-day-old female flies were used in the fly nicking assays according to a modified method of D'Argenio et al. (9). Flies were anesthetized and separated on a cold tile. The female flies were carefully nicked in the dorsal thorax with a 27.5-gauge needle (BD Biosciences) which was dipped in bacterial culture normalized to an optical density at 600 nm of 1.0 in BHI broth. After nicking, 10 flies were placed into each vial of standard cornmeal medium and maintained at room temperature. Each isolate was tested in triplicate. Fly survival was monitored and recorded from 12 to 36 h postinoculation. Viable bacterial counts. Bacterial infection was monitored throughout D. melanogaster fly feeding experiments. For enumeration of viable bacteria in fly feeding assays, control sucrose vials, and test vials inoculated with P. aeruginosa strains/isolates were harvested every 2 days up to 14 days for the duration of the infection. Flies were washed four times in 50 ml of 50% LB medium and then homogenized by using pestles (Diamed) and a cordless motor (VWR). The homogenate was resuspended in 1 ml of LB medium. Serial dilutions of the homogenate were made, and 30 μl was plated onto LB agar. Filters from the vials were removed, placed in 5 ml of LB medium, and vortex mixed for 15 s; the LB medium was then serially diluted, and 30 μl was plated onto LB agar. After incubation at 37°C for 24 h, the colonies appearing on the plates were counted. Cluster analysis. Cluster 3.0 was used to assign CF isolates, burn wound isolates and control strains into groups based on the percentage of fly survival at each time point (10). For each time point in fly feeding and fly nicking experiments, the data for all isolates was averaged and used as a baseline for comparison. Uncentered complete clustering was performed with a GWEIGHT of 0.5 for fly feeding and 0.25 for fly nicking. GWEIGHT in this instance takes into account the greater number of time points in the fly nicking experiment than in the fly feeding experiment. Java Treeview 1.1.1 was used to visualize the cluster alignments (35). Statistics. Survival curves were generated and analyzed by using the log-rank test of Prism 3 software (GraphPad Software, Inc.). RESULTS Comparison of P. aeruginosa strains in two models of Drosophila infection. The Drosophila feeding and nicking models of infection were used to evaluate the pathogenic potential of P. aeruginosa strains. The models are distinct. For instance, in the feeding model the bacteria have to be able to cross the gut barrier and the infection is slower to develop (time to death measured over 14 days). In contrast, in the nicking model the surface of the fly is breached and so the infection proceeds more quickly than the fly feeding model (time to death measured over 36 h). Hence, we speculated that in both models the bacteria have to circumvent the innate immune systems of the fly, but the flies may respond differently depending on how the bacteria are presented. In order to assess the infectivity of each isolate, the percent survival of each P. aeruginosa strain was averaged at each time point to generate survival curves for comparison. Figure Figure1A1A
Human burn wound isolates ATCC 27853, Utah3 and Utah4 were all obtained from highly invasive infections. Their survival curves in the fly feeding model were not significantly different (P = 0.239), showing a pronounced ability to kill flies (Fig. (Fig.1C).1C A greater diversity in the ability to kill flies in both models was observed among the CF isolates compared to the other strains tested (Fig. (Fig.1).1 Strain PA103 exhibited distinct survival profiles in each of the infection models (Fig. 1A and B
Fly survival on the filters during the Drosophila feeding model. Differences in the isolates' ability to kill flies in the feeding model may have been due to an altered ability of the isolates to survive on the filters during the experiment. To address this possibility, we assayed filter survival of three highly lethal isolates (PAO1, Utah4, and 14649), two less-lethal isolates (6106 and 14672), and three isolates that exhibited different levels of lethality between the two models (PA103, 14650, and 14671). In all strains but one, a decrease of at least 101 CFU per filter in viability over the 14-day period of the experiment was seen (Fig. (Fig.5).5
Establishing bacterial colonization in the D. melanogaster fly feeding model. Since the survival of bacteria on the filters was similar, the bacterial load in the flies was also monitored. Bacterial CFU per fly was assessed at the same intervals as described above to determine the bacterial load during infection. Figure Figure66
As shown by the average CFU per fly and CFU per filter, there did appear to be a correlation with bacterial load and the ability to cause death in the fly. However, since the flies were kept on the bacteria for the duration of the experiment, the ability of P. aeruginosa to establish and maintain an infection without continuous exposure to bacteria required assessment. To carry out this experiment, PAO1 was used to infect flies as described in Materials and Methods, with the modification that the flies were transferred to sterile sucrose 2, 3, or 4 days postinfection. Fly mortality was monitored daily, and the bacterial CFU per fly was assessed at day 8 (Fig. (Fig.7).7
Pseudomonas CF isolates from individual patients and within single sputum samples exhibit a diversity of lethality in the two Drosophila models of infection. In the present study, three burn wound isolates and three control strains were all highly infectious and killed the majority of flies in both models. The one exception was strain PA103, which was lethal to flies only in the fly nicking model of infection. In contrast, the 27 CF isolates showed a wide range of fly lethality in both infection models, ranging from essentially 0 to ≥80% lethality. Since these CF isolates all came from adult CF patients who had been stably colonized for many years, it was of interest to determine the distribution of the isolates' pathogenic potential in samples from individual patients. Table 1 shows that the 27 CF isolates were isolated from 13 patients. The data set encompasses multiple isolates from individual sputum samples, single isolates from sputum samples, and some isolates from individual patients collected over time.
We had two or more isolates from nine patients collected over a short period of time. As mentioned above, these patients had been chronically colonized for years with P. aeruginosa. As such, we might have expected that different isolates from the same patient would display similar levels of lethality in the fly models of infection. However, in all but one patient we found that the survival curves generated from their isolates were significantly different (P ≤ 0.028). This would suggest that the diversity seen for the entire set of CF isolates is also found within isolates from individual patients. For seven patients there were at least two P. aeruginosa isolates from the same sputum. In five of these patient samples (from patients 57, 89, 90, 91, and 92) there was a range of lethality for the P. aeruginosa isolates, with at least one isolate falling into one of the more lethal groups 1, 2, or 3 (Table 1). Isolates from each of these patients showed significant differences in fly survival in both model systems (P < 0.029). This suggested diversity in pathogenic potentials for isolates even within a single patient sample. This was best illustrated by patients 89 and 57 (Fig. (Fig.8),8
DISCUSSION As a pathogen, P. aeruginosa is able to adapt to various hosts and cause either acute or chronic infections (14). In CF, chronic and persistent lung infections occur that are interspersed with periods of worsened symptomatology that could be characterized as acute exacerbations. In acute burn wounds, P. aeruginosa can cause fulminant infections especially if the strains are invasive. In the present study, we wanted to compare the pathogenic potential of P. aeruginosa isolates from acute burn wound infections and from chronic CF lung infections in two Drosophila infection models. Previously, the D. melanogaster models have been used separately to assay the pathogenic potential of many Pseudomonas strains, based on lethality in the fly (9, 13, 23), but a direct comparison of the models has not been done. We were particularly interested in these two models because the fly nicking model likely represents a faster, more-acute infection, wherein the host's external barriers are compromised, and the fly feeding model represents a slower, more-chronic long-term infection. A comparison of the two infection models revealed that the majority of strains (82%) had similar but not identical levels of lethality in both models of infection. These included all of the burn wound isolates; strains PAO1, PAK, and PA14; and 81% of the CF isolates. Thus, the majority of the isolates and strains did not show a predilection for one model or the other. There was a subtle difference between the infection models, where the survival curves for the all of the isolates seemed to form groups in the fly feeding model but displayed more of a continuum in the fly nicking model. This might suggest that the nicking model was slightly more sensitive to differences between strains. Some strains exhibited dramatically different pathogenic potentials in the two fly infection models. One group (Fig. (Fig.2,2 In contrast to group 3, the three CF isolates 14650, 5154, and 14671 (belonging to group 2) elicited greater killing in the Drosophila feeding model compared to the nicking model and are therefore of particular interest. It was unexpected that they would be unable to set up an infection when the Drosophila defenses were breached (nicking model) but would be able to cause an infection when defenses were intact (feeding model). This difference may be due to different interactions with the Drosophila immune system. In the nicking model of infection, P. aeruginosa causes a strong immune response compared to other pathogenic organisms (24). The immune response may vary depending on the strain used. For example, in the nicking model of infection a CF isolate, CF5, induces a robust immune response that gives the fly protection against subsequent infections (2). In contrast, PA14 quickly overwhelms the fly immune response and sets up a fatal infection (2). In the Drosophila feeding assay, P. aeruginosa may not induce as strong an immune response as that induced by other bacterial pathogens (43). Thus, a possible explanation for the lack of lethality of isolates 14650, 5154, and 14671 in the nicking model is that these isolates may induce a strong immune response and as a result cannot set up an infection. In the feeding model, these three isolates may be able to get around the hostile environment in the gut but may not elicit a strong enough immune response and were able to set up an infection. Further work is needed to establish the nature of these differences. It was previously reported that P. aeruginosa isolates from human infections demonstrate a spectrum of pathogenic potential, from 47 to 100% mortality in the Drosophila nicking model (21). Such a range of pathogenic potential of human isolates is also found using the Caenorhabditis elegans infection model (22). Interestingly, Lee et al. (22) tested four CF isolates and found that these had the widest spectrum of pathogenic potential of any human isolates tested. Our results with 27 CF isolates, in the two fly models, confirmed the heterogeneity of the pathogenic potential of CF isolates (Fig. (Fig.11 Notably, the CF isolates showed a diversity of pathogenic potentials both at the patient level (Table 1, patients 89, 57, 90, 91, and 92) and at the level of individual sputum samples (Fig. (Fig.88 In two sputum samples from CF patients 29 and 38, respectively, only isolates with less-than-average lethality were detected. Furthermore, of the five isolates (14655, 14556, 14715, 14716, and 14717) from these two samples, all had low levels of lethality (<10% killing) in at least one model, and two isolates lacked significant lethality in both models (Table 1). These isolates and others that lack the ability to kill flies in both models may individually lack the pathogenic potential to establish infections, or they may elicit a strong immune response in the flies and so were unable to establish an infection. These results raise the question of whether the isolates that are not lethal to the flies could themselves maintain an infection in CF patients. It is possible that these strains, while not lethal in the fly models of infection, might retain pathogenicity in human infections or at least retain the ability to colonize the lung. Our research on isolate 6106 suggested that the isolate could colonize the flies at a low level but could not go on to cause an infection and death of the fly (<10% lethality overall). Thus, even CF isolates with very low levels of lethality may still retain the ability to colonize a host. Finally, since all of our patients are adults who have been chronically infected for years with P. aeruginosa, it is also possible that the host defenses have degraded to such a point where the infecting bacteria may no longer need their virulence determinants to maintain the infection. At the other end of the spectrum, we have found a number of CF isolates, burn wound isolates, and control strains that are highly lethal to the flies in both model systems (Fig. (Fig.2,2 This research has many implications for the chronic lung infections associated with CF. Our findings suggested that within bacterial populations in the lung there may be distinct subpopulations that have various degrees of pathogenic potentials. It is not clear what role the isolates with different pathogenic potentials might play in the chronic lung infections associated with CF. However, based on the characterizations in the present study, we speculate that the isolates with higher pathogenic potential may be involved in establishment of infection, cross-infection and pathogenic processes. On the other hand, the CF isolates with lower or no pathogenic potential in the flies may play a role more in chronic colonization and perhaps in evasion of the immune response. Alternatively, in CF patients that have been colonized for many years, the host immune response may have degraded to a point where the colonizing strains no longer need their pathogenic potential in order to maintain the infection. Further research is needed to define the characteristics of the subpopulations and to determine the factors involved in differences of these subpopulations between patients. In summary, our results demonstrate that the majority of strains (82%) have similar pathogenic potential in both Drosophila infection models, regardless of the type of infection from which they were isolated. The CF isolates examined in the present study displayed a wide spectrum of lethality in both fly infection models, whereas P. aeruginosa isolates from burn wounds and most of the control strains were highly lethal in both models. Differences in bacterial load in the flies suggested that lethal strains were able to establish and maintain an infection in Drosophila, whereas less-lethal strains were able to colonize the flies at a lower level but were not able to establish an infection that killed the flies. Alternatively, the less lethal strains and isolates may elicit an immune response that blocks their progress to a lethal infection. 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