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A generic approach to identify Transcription Factor-specific operator motifs; Inferences for LacI-family mediated regulation in Lactobacillus plantarum WCFS1
Christof Francke, Robert Kerkhoven, Michiel Wels, Roland J Siezen
BMC Genomics. 2008; 9: 145. Published online 2008 March 27. doi: 10.1186/1471-2164-9-145
PMCID:
PMC2329647
Abstract Full Text PDF–739K Supplementary Material

Is Cited by the Following 14 Articles in this Archive:

Complete Resequencing and Reannotation of the Lactobacillus plantarum WCFS1 Genome
Roland J. Siezen, Christof Francke, Bernadet Renckens, Jos Boekhorst, Michiel Wels, Michiel Kleerebezem, Sacha A. F. T. van Hijum
J Bacteriol. 2012 January; 194(1): 195–196. doi: 10.1128/JB.06275-11
PMCID:
PMC3256602
Free in PMC on 2012/07/01
Genomic diversity and versatility of Lactobacillus plantarum, a natural metabolic engineer
Roland J Siezen, Johan ET van Hylckama Vlieg
Microb Cell Fact. 2011; 10(Suppl 1): S3. Published online 2011 August 30. doi: 10.1186/1475-2859-10-S1-S3
PMCID:
PMC3271238
Abstract Full Text PDF–1.1M Supplementary Material
Niche-specific contribution to streptococcal virulence of a MalR-regulated carbohydrate binding protein
Samuel A. Shelburne, III, Pranoti Sahasrobhajane, Bryce Suber, David B. Keith, Michael T. Davenport, Nicola Horstmann, Muthiah Kumaraswami, Randall J. Olsen, Richard G. Brennan, James M. Musser
Mol Microbiol. Author manuscript; available in PMC 2012 July 1.
Published in final edited form as: Mol Microbiol. 2011 July; 81(2): 500–514. Published online 2011 June 5. doi: 10.1111/j.1365-2958.2011.07708.x
PMCID:
PMC3147245
Free in PMC on 2012/07/01
Adaptation of Lactobacillus plantarum IMDO 130201, a Wheat Sourdough Isolate, to Growth in Wheat Sourdough Simulation Medium at Different pH Values through Differential Gene Expression
Gino Vrancken, Luc De Vuyst, Tom Rimaux, Joke Allemeersch, Stefan Weckx
Appl Environ Microbiol. 2011 May; 77(10): 3406–3412. doi: 10.1128/AEM.02668-10
PMCID:
PMC3126451
Abstract Full Text PDF–778K Supplementary Material
Functionally Important Positions Can Comprise the Majority of a Protein's Architecture
Sudheer Tungtur, Daniel J. Parente, Liskin Swint-Kruse
Proteins. Author manuscript; available in PMC 2012 May 1.
Published in final edited form as: Proteins. 2011 May; 79(5): 1589–1608. Published online 2011 March 4. doi: 10.1002/prot.22985
PMCID:
PMC3076786
Abstract Full Text PDF–2.2M Supplementary Material
Local Gene Regulation Details a Recognition Code within the LacI Transcriptional Factor Family
Francisco M. Camas, Eric J. Alm, Juan F. Poyatos
PLoS Comput Biol. 2010 November; 6(11): e1000989. Published online 2010 November 11. doi: 10.1371/journal.pcbi.1000989
PMCID:
PMC2978694
Abstract Full Text PDF–1.1M Supplementary Material
The Streptococcus mutans Cid and Lrg systems modulate virulence traits in response to multiple environmental signals
Sang-Joon Ahn, Kelly C. Rice, Janneth Oleas, Kenneth W. Bayles, Robert A. Burne
Microbiology. 2010 October; 156(Pt 10): 3136–3147. doi: 10.1099/mic.0.039586-0
PMCID:
PMC3068699
Abstract Full Text PDF–365K Supplementary Material
Maltose and Maltodextrin Utilization by Listeria monocytogenes Depend on an Inducible ABC Transporter which Is Repressed by Glucose
Shubha Gopal, Daniela Berg, Nicole Hagen, Eva-Maria Schriefer, Regina Stoll, Werner Goebel, Jürgen Kreft
PLoS One. 2010; 5(4): e10349. Published online 2010 April 27. doi: 10.1371/journal.pone.0010349
PMCID:
PMC2860498
Abstract Full Text PDF–374K Supplementary Material
The proteolytic system of lactic acid bacteria revisited: a genomic comparison
Mengjin Liu, Jumamurat R Bayjanov, Bernadet Renckens, Arjen Nauta, Roland J Siezen
BMC Genomics. 2010; 11: 36. Published online 2010 January 15. doi: 10.1186/1471-2164-11-36
PMCID:
PMC2827410
Abstract Full Text PDF–4.4M Supplementary Material
Comparing the functional roles of nonconserved sequence positions in homologous transcription repressors: Implications for sequence/function analyses
Sudheer Tungtur, Sarah Meinhardt, Liskin Swint-Kruse
J Mol Biol. Author manuscript; available in PMC 2011 January 29.
Published in final edited form as: J Mol Biol. 2010 January 29; 395(4): 785. Published online 2009 October 8. doi: 10.1016/j.jmb.2009.10.001
PMCID:
PMC2813367
Abstract Full Text PDF–2.9M Supplementary Material
Mechanisms and Evolution of Control Logic in Prokaryotic Transcriptional Regulation
Sacha A. F. T. van Hijum, Marnix H. Medema, Oscar P. Kuipers
Microbiol Mol Biol Rev. 2009 September; 73(3): 481–509. doi: 10.1128/MMBR.00037-08
PMCID:
PMC2738135
Abstract Full Text PDF–4.4M
Allostery in the LacI/GalR Family: Variations on a Theme
Liskin Swint-Kruse, Kathleen S. Matthews
Curr Opin Microbiol. Author manuscript; available in PMC 2010 April 1.
Published in final edited form as: Curr Opin Microbiol. 2009 April; 12(2): 129–137. Published online 2009 March 5. doi: 10.1016/j.mib.2009.01.009
PMCID:
PMC2688824
Abstract Full Text PDF–1.7M
PanCGH: a genotype-calling algorithm for pangenome CGH data
Jumamurat R. Bayjanov, Michiel Wels, Marjo Starrenburg, Johan E. T. van Hylckama Vlieg, Roland J. Siezen, Douwe Molenaar
Bioinformatics. 2009 February 1; 25(3): 309–314. Published online 2009 January 7. doi: 10.1093/bioinformatics/btn632
PMCID:
PMC2639077
Abstract Full Text PDF–171K Supplementary Material
Comparative Genomics of Enzymes in Flavor-Forming Pathways from Amino Acids in Lactic Acid Bacteria
Mengjin Liu, Arjen Nauta, Christof Francke, Roland J. Siezen
Appl Environ Microbiol. 2008 August; 74(15): 4590–4600. Published online 2008 June 6. doi: 10.1128/AEM.00150-08
PMCID:
PMC2519355
Full Text PDF–1.4M Supplementary Material
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