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Combined analysis reveals a core set of cycling genes
Yong Lu, Shaun Mahony, Panayiotis V Benos, Roni Rosenfeld, Itamar Simon, Linda L Breeden, Ziv Bar-Joseph
Genome Biol. 2007; 8(7): R146. Published online 2007 July 24. doi: 10.1186/gb-2007-8-7-r146
PMCID:
PMC2323241
Abstract Full Text PDF–448K Supplementary Material
 Is Cited by the Following 9 Articles in this Archive:
Large scale comparison of global gene expression patterns in human and mouse
Xiangqun Zheng-Bradley, Johan Rung, Helen Parkinson, Alvis Brazma
Genome Biol. 2010; 11(12): R124. Published online 2010 December 23. doi: 10.1186/gb-2010-11-12-r124
PMCID:
PMC3046484
Abstract Full Text PDF–2.0M Supplementary Material
Cross Species Expression Analysis of Innate Immune Response
Yong Lu, Roni Rosenfeld, Gerard J. Nau, Ziv Bar-Joseph
J Comput Biol. 2010 March; 17(3): 253–268. doi: 10.1089/cmb.2009.0147
PMCID:
PMC3198893
Abstract Full Text PDF–533K
Phase Coupled Meta-analysis: sensitive detection of oscillations in cell cycle gene expression, as applied to fission yeast
Saumyadipta Pyne, Roee Gutman, Chang Sik Kim, Bruce Futcher
BMC Genomics. 2009; 10: 440. Published online 2009 September 17. doi: 10.1186/1471-2164-10-440
PMCID:
PMC2753555
Abstract Full Text PDF–2.0M Supplementary Material
Budding Yeast SSD1-V Regulates Transcript Levels of Many Longevity Genes and Extends Chronological Life Span in Purified Quiescent Cells
Lihong Li, Yong Lu, Li-Xuan Qin, Ziv Bar-Joseph, Margaret Werner-Washburne, Linda L. Breeden
Mol Biol Cell. 2009 September 1; 20(17): 3851–3864. doi: 10.1091/mbc.E09-04-0347
PMCID:
PMC2735484
Abstract Full Text PDF–2.3M Supplementary Material
Cross species analysis of microarray expression data
Yong Lu, Peter Huggins, Ziv Bar-Joseph
Bioinformatics. 2009 June 15; 25(12): 1476–1483. Published online 2009 April 8. doi: 10.1093/bioinformatics/btp247
PMCID:
PMC2732912
Abstract Full Text PDF–489K
Genome adaptation to chemical stress: clues from comparative transcriptomics in Saccharomyces cerevisiae and Candida glabrata
Gaëlle Lelandais, Véronique Tanty, Colette Geneix, Catherine Etchebest, Claude Jacq, Frédéric Devaux
Genome Biol. 2008; 9(11): R164. Published online 2008 November 24. doi: 10.1186/gb-2008-9-11-r164
PMCID:
PMC2614496
Abstract Full Text PDF–1.5M Supplementary Material
Circular reasoning rather than cyclic expression
Lars Juhl Jensen, Ulrik de Lichtenberg, Thomas Skøt Jensen, Søren Brunak, Peer Bork
Genome Biol. 2008; 9(6): 403. Published online 2008 June 23. doi: 10.1186/gb-2008-9-6-403
PMCID:
PMC2481420
Abstract Full Text PDF–1.8M
Genome-wide transcriptional analysis of the human cell cycle identifies genes differentially regulated in normal and cancer cells
Ziv Bar-Joseph, Zahava Siegfried, Michael Brandeis, Benedikt Brors, Yong Lu, Roland Eils, Brian D. Dynlacht, Itamar Simon
Proc Natl Acad Sci U S A. 2008 January 22; 105(3): 955–960. Published online 2008 January 14. doi: 10.1073/pnas.0704723105
PMCID:
PMC2242708
Abstract Full Text PDF–667K Supplementary Material
Cyclebase.org—a comprehensive multi-organism online database of cell-cycle experiments
Nicholas Paul Gauthier, Malene Erup Larsen, Rasmus Wernersson, Ulrik de Lichtenberg, Lars Juhl Jensen, Søren Brunak, Thomas Skøt Jensen
Nucleic Acids Res. 2008 January; 36(Database issue): D854–D859. Published online 2008 January. doi: 10.1093/nar/gkm729
PMCID:
PMC2238932
Abstract Full Text PDF–1016K
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