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Using comparative genomics to reorder the human genome sequence into a virtual sheep genome
Brian P Dalrymple, Ewen F Kirkness, Mikhail Nefedov, Sean McWilliam, Abhirami Ratnakumar, Wes Barris, Shaying Zhao, Jyoti Shetty, Jillian F Maddox, Margaret O'Grady, Frank Nicholas, Allan M Crawford, Tim Smith, Pieter J de Jong, John McEwan, V Hutton Oddy, Noelle E Cockett, the International Sheep Genomics Consortium
Genome Biol. 2007; 8(7): R152. Published online 2007 July 30. doi: 10.1186/gb-2007-8-7-r152
PMCID:
PMC2323240
Abstract Full Text PDF–685K

Is Cited by the Following 20 Articles in this Archive:

Genomic scan of selective sweeps in thin and fat tail sheep breeds for identifying of candidate regions associated with fat deposition
Mohammad Hossein Moradi, Ardeshir Nejati-Javaremi, Mohammad Moradi-Shahrbabak, Ken G Dodds, John C McEwan
BMC Genet. 2012; 13: 10. Published online 2012 February 26. doi: 10.1186/1471-2156-13-10
PMCID:
PMC3351017
Abstract Full Text PDF–1.5M Supplementary Material
Reduced Lentivirus Susceptibility in Sheep with TMEM154 Mutations
Michael P. Heaton, Michael L. Clawson, Carol G. Chitko-Mckown, Kreg A. Leymaster, Timothy P. L. Smith, Gregory P. Harhay, Stephen N. White, Lynn M. Herrmann-Hoesing, Michelle R. Mousel, Gregory S. Lewis, Theodore S. Kalbfleisch, James E. Keen, William W. Laegreid
PLoS Genet. 2012 January; 8(1): e1002467. Published online 2012 January 26. doi: 10.1371/journal.pgen.1002467
PMCID:
PMC3266874
Abstract Full Text PDF–475K Supplementary Material
A first-generation integrated tammar wallaby map and its use in creating a tammar wallaby first-generation virtual genome map
Chenwei Wang, Janine E Deakin, Willem Rens, Kyall R Zenger, Katherine Belov, Jennifer A Marshall Graves, Frank W Nicholas
BMC Genomics. 2011; 12: 422. Published online 2011 August 19. doi: 10.1186/1471-2164-12-422
PMCID:
PMC3170641
Abstract Full Text PDF–344K Supplementary Material
Analysis of BAC-end sequences in rainbow trout: Content characterization and assessment of synteny between trout and other fish genomes
Carine Genet, Patrice Dehais, Yniv Palti, Guangtu Gao, Frederick Gavory, Patrick Wincker, Edwige Quillet, Mekki Boussaha
BMC Genomics. 2011; 12: 314. Published online 2011 June 14. doi: 10.1186/1471-2164-12-314
PMCID:
PMC3125269
Abstract Full Text PDF–227K Supplementary Material
Composite transcriptome assembly of RNA-seq data in a sheep model for delayed bone healing
Marten Jäger, Claus-Eric Ott, Johannes Grünhagen, Jochen Hecht, Hanna Schell, Stefan Mundlos, Georg N Duda, Peter N Robinson, Jasmin Lienau
BMC Genomics. 2011; 12: 158. Published online 2011 March 24. doi: 10.1186/1471-2164-12-158
PMCID:
PMC3074554
Abstract Full Text PDF–1.8M Supplementary Material
LPS-induced decrease in intracellular labile zinc, [Zn]i, contributes to apoptosis in cultured sheep pulmonary artery endothelial cells
Kalidasan Thambiayya, Karla J. Wasserloos, Zhentai Huang, Valerian E. Kagan, Claudette M. St. Croix, Bruce R. Pitt
Am J Physiol Lung Cell Mol Physiol. 2011 April; 300(4): L624–L632. Published online 2011 January 14. doi: 10.1152/ajplung.00376.2010
PMCID:
PMC3075105
Abstract Full Text
Quality control of the sheep bacterial artificial chromosome library, CHORI-243
Abhirami Ratnakumar, Ewen F Kirkness, Brian P Dalrymple
BMC Res Notes. 2010; 3: 334. Published online 2010 December 13. doi: 10.1186/1756-0500-3-334
PMCID:
PMC3020178
Abstract Full Text PDF–229K
Comparative physical maps derived from BAC end sequences of tilapia (Oreochromis niloticus)
Lucile Soler, Matthew A Conte, Takayuki Katagiri, Aimee E Howe, Bo-Young Lee, Chris Amemiya, Andrew Stuart, Carole Dossat, Julie Poulain, Jeremy Johnson, Federica Di Palma, Kerstin Lindblad-Toh, Jean-Francois Baroiller, Helena D'Cotta, Catherine Ozouf-Costaz, Thomas D Kocher
BMC Genomics. 2010; 11: 636. Published online 2010 November 16. doi: 10.1186/1471-2164-11-636
PMCID:
PMC3018143
Abstract Full Text PDF–1.1M Supplementary Material
Using paired-end sequences to optimise parameters for alignment of sequence reads against related genomes
Abhirami Ratnakumar, Sean McWilliam, Wesley Barris, Brian P Dalrymple
BMC Genomics. 2010; 11: 458. Published online 2010 August 3. doi: 10.1186/1471-2164-11-458
PMCID:
PMC3091654
Abstract Full Text PDF–336K
Assignment of chromosomal locations for unassigned SNPs/scaffolds based on pair-wise linkage disequilibrium estimates
Mehar S Khatkar, Matthew Hobbs, Markus Neuditschko, Johann Sölkner, Frank W Nicholas, Herman W Raadsma
BMC Bioinformatics. 2010; 11: 171. Published online 2010 April 7. doi: 10.1186/1471-2105-11-171
PMCID:
PMC2859757
Abstract Full Text PDF–648K Supplementary Material
Microphthalmia in Texel Sheep Is Associated with a Missense Mutation in the Paired-Like Homeodomain 3 (PITX3) Gene
Doreen Becker, Jens Tetens, Adrian Brunner, Daniela Bürstel, Martin Ganter, James Kijas, for the International Sheep Genomics Consortium, Cord Drögemüller
PLoS One. 2010; 5(1): e8689. Published online 2010 January 13. doi: 10.1371/journal.pone.0008689
PMCID:
PMC2805710
Abstract Full Text PDF–523K Supplementary Material
Comparative analysis of catfish BAC end sequences with the zebrafish genome
Hong Liu, Yanliang Jiang, Shaolin Wang, Parichart Ninwichian, Benjaporn Somridhivej, Peng Xu, Jason Abernathy, Huseyin Kucuktas, Zhanjiang Liu
BMC Genomics. 2009; 10: 592. Published online 2009 December 10. doi: 10.1186/1471-2164-10-592
PMCID:
PMC2796685
Abstract Full Text PDF–1.0M Supplementary Material
Genome evolution in Reptilia: in silico chicken mapping of 12,000 BAC-end sequences from two reptiles and a basal bird
Charles Chapus, Scott V Edwards
BMC Genomics. 2009; 10(Suppl 2): S8. Published online 2009 July 14. doi: 10.1186/1471-2164-10-S2-S8
PMCID:
PMC2966332
Abstract Full Text PDF–863K Supplementary Material
Comparative genomics of Toll-like receptor signalling in five species
Oliver C Jann, Annemarie King, Nestor Lopez Corrales, Susan I Anderson, Kirsty Jensen, Tahar Ait-ali, Haizhou Tang, Chunhua Wu, Noelle E Cockett, Alan L Archibald, Elizabeth J Glass
BMC Genomics. 2009; 10: 216. Published online 2009 May 11. doi: 10.1186/1471-2164-10-216
PMCID:
PMC2689273
Abstract Full Text PDF–409K Supplementary Material
Bos taurus genome assembly
Yue Liu, Xiang Qin, Xing-Zhi Henry Song, Huaiyang Jiang, Yufeng Shen, K James Durbin, Sigbjørn Lien, Matthew Peter Kent, Marte Sodeland, Yanru Ren, Lan Zhang, Erica Sodergren, Paul Havlak, Kim C Worley, George M Weinstock, Richard A Gibbs
BMC Genomics. 2009; 10: 180. Published online 2009 April 24. doi: 10.1186/1471-2164-10-180
PMCID:
PMC2686734
Abstract Full Text PDF–331K Supplementary Material
A Genome Wide Survey of SNP Variation Reveals the Genetic Structure of Sheep Breeds
James W. Kijas, David Townley, Brian P. Dalrymple, Michael P. Heaton, Jillian F. Maddox, Annette McGrath, Peter Wilson, Roxann G. Ingersoll, Russell McCulloch, Sean McWilliam, Dave Tang, John McEwan, Noelle Cockett, V. Hutton Oddy, Frank W. Nicholas, Herman Raadsma, for the International Sheep Genomics Consortium
PLoS ONE. 2009; 4(3): e4668. Published online 2009 March 3. doi: 10.1371/journal.pone.0004668
PMCID:
PMC2652362
Abstract Full Text PDF–721K Supplementary Material
A multiway analysis for identifying high integrity bovine BACs
Abhirami Ratnakumar, Wesley Barris, Sean McWilliam, Rudiger Brauning, John C McEwan, Warren M Snelling, Brian P Dalrymple
BMC Genomics. 2009; 10: 46. Published online 2009 January 23. doi: 10.1186/1471-2164-10-46
PMCID:
PMC2660975
Abstract Full Text PDF–1.8M Supplementary Material
A map of the class III region of the sheep major histocompatibilty complex
J Qin, C Mamotte, NE Cockett, JD Wetherall, DM Groth
BMC Genomics. 2008; 9: 409. Published online 2008 September 11. doi: 10.1186/1471-2164-9-409
PMCID:
PMC2566321
Abstract Full Text PDF–302K Supplementary Material
A gene duplication affecting expression of the ovine ASIP gene is responsible for white and black sheep
Belinda J. Norris, Vicki A. Whan
Genome Res. 2008 August; 18(8): 1282–1293. doi: 10.1101/gr.072090.107
PMCID:
PMC2493430
Abstract Full Text PDF–901K
A physical map of the bovine genome
Warren M Snelling, Readman Chiu, Jacqueline E Schein, Matthew Hobbs, Colette A Abbey, David L Adelson, Jan Aerts, Gary L Bennett, Ian E Bosdet, Mekki Boussaha, Rudiger Brauning, Alexandre R Caetano, Marcos M Costa, Allan M Crawford, Brian P Dalrymple, André Eggen, Annelie Everts-van der Wind, Sandrine Floriot, Mathieu Gautier, Clare A Gill, Ronnie D Green, Robert Holt, Oliver Jann, Steven JM Jones, Steven M Kappes, John W Keele, Pieter J de Jong, Denis M Larkin, Harris A Lewin, John C McEwan, Stephanie McKay, Marco A Marra, Carrie A Mathewson, Lakshmi K Matukumalli, Stephen S Moore, Brenda Murdoch, Frank W Nicholas, Kazutoyo Osoegawa, Alice Roy, Hanni Salih, Laurent Schibler, Robert D Schnabel, Licia Silveri, Loren C Skow, Timothy PL Smith, Tad S Sonstegard, Jeremy F Taylor, Ross Tellam, Curtis P Van Tassell, John L Williams, James E Womack, Natasja H Wye, George Yang, Shaying Zhao, the International Bovine BAC Mapping Consortium
Genome Biol. 2007; 8(8): R165. Published online 2007 August 14. doi: 10.1186/gb-2007-8-8-r165
PMCID:
PMC2374996
Abstract Full Text PDF–2.5M Supplementary Material
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