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Novel metrics for evaluating the functional coherence of protein groups via protein semantic network
Bin Zheng, Xinghua Lu
Genome Biol. 2007; 8(7): R153. Published online 2007 July 31. doi: 10.1186/gb-2007-8-7-r153
PMCID:
PMC2323239
Abstract Full Text PDF–492K

Is Cited by the Following 8 Articles in this Archive:

Functional Annotation of Hierarchical Modularity
Kanchana Padmanabhan, Kuangyu Wang, Nagiza F. Samatova
PLoS One. 2012; 7(4): e33744. Published online 2012 April 4. doi: 10.1371/journal.pone.0033744
PMCID:
PMC3319548
Abstract Full Text PDF–664K Supplementary Material
Mapping annotations with textual evidence using an scLDA model
Bo Jin, Vicky Chen, Lujia Chen, Xinghua Lu
AMIA Annu Symp Proc. 2011; 2011: 834–842. Published online 2011 October 22.
PMCID:
PMC3243146
Abstract Full Text PDF–620K Supplementary Material
Quantification of protein group coherence and pathway assignment using functional association
Meghana Chitale, Shriphani Palakodety, Daisuke Kihara
BMC Bioinformatics. 2011; 12: 373. Published online 2011 September 19. doi: 10.1186/1471-2105-12-373
PMCID:
PMC3189934
Abstract Full Text PDF–2.1M Supplementary Material
GO-based Functional Dissimilarity of Gene Sets
Norberto Díaz-Díaz, Jesús S Aguilar-Ruiz
BMC Bioinformatics. 2011; 12: 360. Published online 2011 September 1. doi: 10.1186/1471-2105-12-360
PMCID:
PMC3248071
Abstract Full Text PDF–578K
Assessing the functional coherence of modules found in multiple-evidence networks from Arabidopsis
Artem Lysenko, Michael Defoin-Platel, Keywan Hassani-Pak, Jan Taubert, Charlie Hodgman, Christopher J Rawlings, Mansoor Saqi
BMC Bioinformatics. 2011; 12: 203. Published online 2011 May 25. doi: 10.1186/1471-2105-12-203
PMCID:
PMC3118170
Abstract Full Text PDF–1.2M Supplementary Material
Functional Cohesion of Gene Sets Determined by Latent Semantic Indexing of PubMed Abstracts
Lijing Xu, Nicholas Furlotte, Yunyue Lin, Kevin Heinrich, Michael W. Berry, Ebenezer O. George, Ramin Homayouni
PLoS One. 2011; 6(4): e18851. Published online 2011 April 14. doi: 10.1371/journal.pone.0018851
PMCID:
PMC3077411
Abstract Full Text PDF–357K Supplementary Material
Assessing the functional coherence of gene sets with metrics based on the Gene Ontology graph
Adam J. Richards, Brian Muller, Matthew Shotwell, L. Ashley Cowart, Bäerbel Rohrer, Xinghua Lu
Bioinformatics. 2010 June 15; 26(12): i79–i87. Published online 2010 June 1. doi: 10.1093/bioinformatics/btq203
PMCID:
PMC2881388
Abstract Full Text PDF–5.5M
Assessment of protein set coherence using functional annotations
Monica Chagoyen, Jose M Carazo, Alberto Pascual-Montano
BMC Bioinformatics. 2008; 9: 444. Published online 2008 October 20. doi: 10.1186/1471-2105-9-444
PMCID:
PMC2588600
Abstract Full Text PDF–699K Supplementary Material
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