pmc logo image
Global analysis of patterns of gene expression during Drosophila embryogenesis
Pavel Tomancak, Benjamin P Berman, Amy Beaton, Richard Weiszmann, Elaine Kwan, Volker Hartenstein, Susan E Celniker, Gerald M Rubin
Genome Biol. 2007; 8(7): R145. Published online 2007 July 23. doi: 10.1186/gb-2007-8-7-r145
PMCID:
PMC2323238
Abstract Full Text PDF–5.6M Supplementary Material
Page of 2 Next Last
 Is Cited by the Following 55 Articles in this Archive:
Tramtrack Is Genetically Upstream of Genes Controlling Tracheal Tube Size in Drosophila
Barbara Rotstein, David Molnar, Boris Adryan, Marta Llimargas
PLoS One. 2011; 6(12): e28985. Published online 2011 December 22. doi: 10.1371/journal.pone.0028985
PMCID:
PMC3245245
Abstract Full Text PDF–901K Supplementary Material
A comparative gene expression database for invertebrates
Mattias Ormestad, Mark Q Martindale, Eric Röttinger
EvoDevo. 2011; 2: 17. Published online 2011 August 24. doi: 10.1186/2041-9139-2-17
PMCID:
PMC3180427
Abstract Full Text PDF–8.1M
Improved accuracy of supervised CRM discovery with interpolated Markov models and cross-species comparison
Majid Kazemian, Qiyun Zhu, Marc S. Halfon, Saurabh Sinha
Nucleic Acids Res. 2011 December; 39(22): 9463–9472. Published online 2011 August 5. doi: 10.1093/nar/gkr621
PMCID:
PMC3239187
Abstract Full Text PDF–6.8M
Protein localization as a principal feature of the etiology and comorbidity of genetic diseases
Solip Park, Jae-Seong Yang, Young-Eun Shin, Juyong Park, Sung Key Jang, Sanguk Kim
Mol Syst Biol. 2011; 7: 494. Published online 2011 May 24. doi: 10.1038/msb.2011.29
PMCID:
PMC3130560
Abstract Full Text PDF–2.0M Supplementary Material
Dynamic reprogramming of chromatin accessibility during Drosophila embryo development
Sean Thomas, Xiao-Yong Li, Peter J Sabo, Richard Sandstrom, Robert E Thurman, Theresa K Canfield, Erika Giste, William Fisher, Ann Hammonds, Susan E Celniker, Mark D Biggin, John A Stamatoyannopoulos
Genome Biol. 2011; 12(5): R43. Published online 2011 May 11. doi: 10.1186/gb-2011-12-5-r43
PMCID:
PMC3219966
Abstract Full Text PDF–1.5M Supplementary Material
Stepwise assembly of the Nova-regulated alternative splicing network in the vertebrate brain
Manuel Irimia, Amanda Denuc, Demián Burguera, Ildiko Somorjai, Jose M. Martín-Durán, Grigory Genikhovich, Senda Jimenez-Delgado, Ulrich Technau, Scott W. Roy, Gemma Marfany, Jordi Garcia-Fernàndez
Proc Natl Acad Sci U S A. 2011 March 29; 108(13): 5319–5324. Published online 2011 March 9. doi: 10.1073/pnas.1012333108
PMCID:
PMC3069165
Abstract Full Text PDF–822K Supplementary Material
Automatically identifying and annotating mouse embryo gene expression patterns
Liangxiu Han, Jano I. van Hemert, Richard A. Baldock
Bioinformatics. 2011 April 15; 27(8): 1101–1107. Published online 2011 February 25. doi: 10.1093/bioinformatics/btr105
PMCID:
PMC3072560
Abstract Full Text PDF–472K
Genome-wide analysis of promoter architecture in Drosophila melanogaster
Roger A. Hoskins, Jane M. Landolin, James B. Brown, Jeremy E. Sandler, Hazuki Takahashi, Timo Lassmann, Charles Yu, Benjamin W. Booth, Dayu Zhang, Kenneth H. Wan, Li Yang, Nathan Boley, Justen Andrews, Thomas C. Kaufman, Brenton R. Graveley, Peter J. Bickel, Piero Carninci, Joseph W. Carlson, Susan E. Celniker
Genome Res. 2011 February; 21(2): 182–192. doi: 10.1101/gr.112466.110
PMCID:
PMC3032922
Abstract Full Text PDF–900K
A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo
Graciana Diez-Roux, Sandro Banfi, Marc Sultan, Lars Geffers, Santosh Anand, David Rozado, Alon Magen, Elena Canidio, Massimiliano Pagani, Ivana Peluso, Nathalie Lin-Marq, Muriel Koch, Marchesa Bilio, Immacolata Cantiello, Roberta Verde, Cristian De Masi, Salvatore A. Bianchi, Juliette Cicchini, Elodie Perroud, Shprese Mehmeti, Emilie Dagand, Sabine Schrinner, Asja Nürnberger, Katja Schmidt, Katja Metz, Christina Zwingmann, Norbert Brieske, Cindy Springer, Ana Martinez Hernandez, Sarah Herzog, Frauke Grabbe, Cornelia Sieverding, Barbara Fischer, Kathrin Schrader, Maren Brockmeyer, Sarah Dettmer, Christin Helbig, Violaine Alunni, Marie-Annick Battaini, Carole Mura, Charlotte N. Henrichsen, Raquel Garcia-Lopez, Diego Echevarria, Eduardo Puelles, Elena Garcia-Calero, Stefan Kruse, Markus Uhr, Christine Kauck, Guangjie Feng, Nestor Milyaev, Chuang Kee Ong, Lalit Kumar, MeiSze Lam, Colin A. Semple, Attila Gyenesei, Stefan Mundlos, Uwe Radelof, Hans Lehrach, Paolo Sarmientos, Alexandre Reymond, Duncan R. Davidson, Pascal Dollé, Stylianos E. Antonarakis, Marie-Laure Yaspo, Salvador Martinez, Richard A. Baldock, Gregor Eichele, Andrea Ballabio
PLoS Biol. 2011 January; 9(1): e1000582. Published online 2011 January 18. doi: 10.1371/journal.pbio.1000582
PMCID:
PMC3022534
Abstract Full Text PDF–3.8M Supplementary Material
A Dual Platform Approach to Transcript Discovery for the Planarian Schmidtea Mediterranea to Establish RNAseq for Stem Cell and Regeneration Biology
Martin J. Blythe, Damian Kao, Sunir Malla, Joanna Rowsell, Ray Wilson, Deborah Evans, Jamie Jowett, Amy Hall, Virginie Lemay, Sabrina Lam, A. Aziz Aboobaker
PLoS One. 2010; 5(12): e15617. Published online 2010 December 14. doi: 10.1371/journal.pone.0015617
PMCID:
PMC3001875
Abstract Full Text PDF–960K Supplementary Material
DroID 2011: a comprehensive, integrated resource for protein, transcription factor, RNA and gene interactions for Drosophila
Thilakam Murali, Svetlana Pacifico, Jingkai Yu, Stephen Guest, George G. Roberts, III, Russell L. Finley, Jr
Nucleic Acids Res. 2011 January; 39(Database issue): D736–D743. Published online 2010 October 29. doi: 10.1093/nar/gkq1092
PMCID:
PMC3013689
Abstract Full Text PDF–5.7M
The gap gene network
Johannes Jaeger
Cell Mol Life Sci. 2011 January; 68(2): 243–274. Published online 2010 October 8. doi: 10.1007/s00018-010-0536-y
PMCID:
PMC3016493
Abstract Full Text PDF–1.1M
Systematic protein location mapping reveals five principal chromatin types in Drosophila cells
Guillaume J. Filion, Joke G. van Bemmel, Ulrich Braunschweig, Wendy Talhout, Jop Kind, Lucas D. Ward, Wim Brugman, Ines de Castro Genebra de Jesus, Ron M. Kerkhoven, Harmen J. Bussemaker, Bas van Steensel
Cell. Author manuscript; available in PMC 2011 October 15.
Published in final edited form as: Cell. 2010 October 15; 143(2): 212–224. Published online 2010 September 30. doi: 10.1016/j.cell.2010.09.009
PMCID:
PMC3119929
Abstract Full Text PDF–1.6M Supplementary Material
Temporal waves of coherent gene expression during Drosophila embryogenesis
Ilya Papatsenko, Mike Levine, Dmitri Papatsenko
Bioinformatics. 2010 November 1; 26(21): 2731–2736. Published online 2010 September 6. doi: 10.1093/bioinformatics/btq513
PMCID:
PMC3025744
Abstract Full Text PDF–493K Supplementary Material
Understanding Kidney Disease: Toward the Integration of Regulatory Networks Across Species
Wenjun Ju, Frank C. Brosius, III
Semin Nephrol. Author manuscript; available in PMC 2011 September 1.
Published in final edited form as: Semin Nephrol. 2010 September 1; 30(5): 512–519. doi: 10.1016/j.semnephrol.2010.07.008
PMCID:
PMC2989742
Abstract Full Text PDF–243K
Dcas Supports Cell Polarization and Cell-Cell Adhesion Complexes in Development
Nadezhda Tikhmyanova, Alexei V. Tulin, Fabrice Roegiers, Erica A. Golemis
PLoS One. 2010; 5(8): e12369. Published online 2010 August 24. doi: 10.1371/journal.pone.0012369
PMCID:
PMC2927436
Abstract Full Text PDF–2.5M Supplementary Material
Quantitative Analysis of the Drosophila Segmentation Regulatory Network Using Pattern Generating Potentials
Majid Kazemian, Charles Blatti, Adam Richards, Michael McCutchan, Noriko Wakabayashi-Ito, Ann S. Hammonds, Susan E. Celniker, Sudhir Kumar, Scot A. Wolfe, Michael H. Brodsky, Saurabh Sinha
PLoS Biol. 2010 August; 8(8): e1000456. Published online 2010 August 17. doi: 10.1371/journal.pbio.1000456
PMCID:
PMC2923081
Abstract Full Text PDF–1.3M Supplementary Material
An alignment-free method to identify candidate orthologous enhancers in multiple Drosophila genomes
Manonmani Arunachalam, Karthik Jayasurya, Pavel Tomancak, Uwe Ohler
Bioinformatics. 2010 September 1; 26(17): 2109–2115. Published online 2010 July 11. doi: 10.1093/bioinformatics/btq358
PMCID:
PMC2922894
Abstract Full Text PDF–304K Supplementary Material
Ancient homeobox gene loss and the evolution of chordate brain and pharynx development: deductions from amphioxus gene expression
Thomas Butts, Peter W. H. Holland, David E. K. Ferrier
Proc Biol Sci. 2010 November 22; 277(1699): 3381–3389. Published online 2010 June 16. doi: 10.1098/rspb.2010.0647
PMCID:
PMC2982225
Abstract Full Text PDF–781K
Mapping the complexity of transcription control in higher eukaryotes
Pavel Tomancak, Uwe Ohler
Genome Biol. 2010; 11(4): 115. Published online 2010 April 30. doi: 10.1186/gb-2010-11-4-115
PMCID:
PMC2884534
Abstract Full Text PDF–243K
Drosophila SAF-B Links the Nuclear Matrix, Chromosomes, and Transcriptional Activity
Catalina Alfonso-Parra, Keith A. Maggert
PLoS One. 2010; 5(4): e10248. Published online 2010 April 20. doi: 10.1371/journal.pone.0010248
PMCID:
PMC2857882
Abstract Full Text PDF–6.6M
The developmental expression dynamics of Drosophila melanogaster transcription factors
Boris Adryan, Sarah A Teichmann
Genome Biol. 2010; 11(4): R40. Published online 2010 April 12. doi: 10.1186/gb-2010-11-4-r40
PMCID:
PMC2884543
Abstract Full Text PDF–1.3M Supplementary Material
Bayesian network analysis of targeting interactions in chromatin
Bas van Steensel, Ulrich Braunschweig, Guillaume J. Filion, Menzies Chen, Joke G. van Bemmel, Trey Ideker
Genome Res. 2010 February; 20(2): 190–200. doi: 10.1101/gr.098822.109
PMCID:
PMC2813475
Abstract Full Text PDF–1.4M
Systematic image-driven analysis of the spatial Drosophila embryonic expression landscape
Erwin Frise, Ann S Hammonds, Susan E Celniker
Mol Syst Biol. 2010; 6: 345. Published online 2010 January 19. doi: 10.1038/msb.2009.102
PMCID:
PMC2824522
Abstract Full Text PDF–3.3M Supplementary Material
FlyTED: the Drosophila Testis Gene Expression Database
Jun Zhao, Graham Klyne, Elizabeth Benson, Elin Gudmannsdottir, Helen White-Cooper, David Shotton
Nucleic Acids Res. 2010 January; 38(Database issue): D710–D715. Published online 2010 January. doi: 10.1093/nar/gkp1006
PMCID:
PMC2808924
Abstract Full Text PDF–3.6M
Systems Biology of Embryogenesis
Lucas B. Edelman, Sriram Chandrasekaran, Nathan D. Price
Reprod Fertil Dev. Author manuscript; available in PMC 2010 August 13.
Published in final edited form as: Reprod Fertil Dev. 2010; 22(1): 98–105. doi: 10.1071/RD09215
PMCID:
PMC2921326
Abstract Full Text PDF–735K
Vasa promotes Drosophila germline stem cell differentiation by activating mei-P26 translation by directly interacting with a (U)-rich motif in its 3′ UTR
Niankun Liu, Hong Han, Paul Lasko
Genes Dev. 2009 December 1; 23(23): 2742–2752. doi: 10.1101/gad.1820709
PMCID:
PMC2788330
Abstract Full Text PDF–970K
Extraction and comparison of gene expression patterns from 2D RNA in situ hybridization images
Daniel L. Mace, Nicole Varnado, Weiping Zhang, Erwin Frise, Uwe Ohler
Bioinformatics. 2010 March 15; 26(6): 761–769. Published online 2009 November 26. doi: 10.1093/bioinformatics/btp658
PMCID:
PMC3140183
Abstract Full Text PDF–580K Supplementary Material
The establishment of sexual identity in the Drosophila germline
Abbie L. Casper, Mark Van Doren
Development. 2009 November 15; 136(22): 3821–3830. Published online 2009 October 23. doi: 10.1242/dev.042374
PMCID:
PMC2766343
Abstract Full Text Supplementary Material
Neural stem cell transcriptional networks highlight genes essential for nervous system development
Tony D Southall, Andrea H Brand
EMBO J. 2009 December 16; 28(24): 3799–3807. Published online 2009 October 22. doi: 10.1038/emboj.2009.309
PMCID:
PMC2770102
Abstract Full Text PDF–1.9M Supplementary Material
Page of 2 Next Last
You are here: NCBI > Literature > PubMed Central
Write to the Help Desk