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Strategy for encoding and comparison of gene expression signatures
Yajun Yi, Chun Li, Clay Miller, Alfred L George, Jr
Genome Biol. 2007; 8(7): R133. Published online 2007 July 5. doi: 10.1186/gb-2007-8-7-r133
PMCID:
PMC2323223
Abstract Full Text PDF–371K

Is Cited by the Following 7 Articles in this Archive:

AnyExpress: Integrated toolkit for analysis of cross-platform gene expression data using a fast interval matching algorithm
Jihoon Kim, Kiltesh Patel, Hyunchul Jung, Winston P Kuo, Lucila Ohno-Machado
BMC Bioinformatics. 2011; 12: 75. Published online 2011 March 17. doi: 10.1186/1471-2105-12-75
PMCID:
PMC3076267
Abstract Full Text PDF–873K Supplementary Material
Meta-analysis of muscle transcriptome data using the MADMuscle database reveals biologically relevant gene patterns
Daniel Baron, Emeric Dubois, Audrey Bihouée, Raluca Teusan, Marja Steenman, Philippe Jourdon, Armelle Magot, Yann Péréon, Reiner Veitia, Frédérique Savagner, Gérard Ramstein, Rémi Houlgatte
BMC Genomics. 2011; 12: 113. Published online 2011 February 16. doi: 10.1186/1471-2164-12-113
PMCID:
PMC3049149
Abstract Full Text PDF–3.5M Supplementary Material
Generalized random set framework for functional enrichment analysis using primary genomics datasets
Johannes M. Freudenberg, Siva Sivaganesan, Mukta Phatak, Kaustubh Shinde, Mario Medvedovic
Bioinformatics. 2011 January 1; 27(1): 70–77. Published online 2010 October 22. doi: 10.1093/bioinformatics/btq593
PMCID:
PMC3025713
Abstract Full Text PDF–547K Supplementary Material
MARQ: an online tool to mine GEO for experiments with similar or opposite gene expression signatures
Miguel Vazquez, Ruben Nogales-Cadenas, Javier Arroyo, Pedro Botías, Raul García, Jose M. Carazo, Francisco Tirado, Alberto Pascual-Montano, Pedro Carmona-Saez
Nucleic Acids Res. 2010 July 1; 38(Web Server issue): W228–W232. Published online 2010 May 29. doi: 10.1093/nar/gkq476
PMCID:
PMC2896165
Abstract Full Text PDF–1.1M Supplementary Material
Web-based interrogation of gene expression signatures using EXALT
Jun Wu, Qingchao Qiu, Lu Xie, Joseph Fullerton, Jian Yu, Yu Shyr, Alfred L George, Jr, Yajun Yi
BMC Bioinformatics. 2009; 10: 420. Published online 2009 December 14. doi: 10.1186/1471-2105-10-420
PMCID:
PMC2799423
Abstract Full Text PDF–1.3M
Candidate metastasis suppressor genes uncovered by array comparative genomic hybridization in a mouse allograft model of prostate cancer
Yajun Yi, Srinivas Nandana, Thomas Case, Colleen Nelson, Tatjana Radmilovic, Robert J Matusik, Karen D Tsuchiya
Mol Cytogenet. 2009; 2: 18. Published online 2009 September 26. doi: 10.1186/1755-8166-2-18
PMCID:
PMC2761934
Abstract Full Text PDF–776K Supplementary Material
GEOGLE: context mining tool for the correlation between gene expression and the phenotypic distinction
Yao Yu, Kang Tu, Siyuan Zheng, Yun Li, Guohui Ding, Jie Ping, Pei Hao, Yixue Li
BMC Bioinformatics. 2009; 10: 264. Published online 2009 August 25. doi: 10.1186/1471-2105-10-264
PMCID:
PMC2745391
Abstract Full Text PDF–671K Supplementary Material
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