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Cell-specific microarray profiling experiments reveal a comprehensive picture of gene expression in the C. elegans nervous system
Stephen E Von Stetina, Joseph D Watson, Rebecca M Fox, Kellen L Olszewski, W Clay Spencer, Peter J Roy, David M Miller, III
Genome Biol. 2007; 8(7): R135. Published online 2007 July 5. doi: 10.1186/gb-2007-8-7-r135
PMCID:
PMC2323220
Abstract Full Text PDF–1.7M Supplementary Material

Is Cited by the Following 21 Articles in this Archive:

Development of the “Three-step MACS”: a Novel Strategy for Isolating Rare Cell Populations in the Absence of Known Cell Surface Markers from Complex Animal Tissue
Mathia Y. Lee, Thomas Lufkin
J Biomol Tech. 2012 July: jbt.12-2302-003. Published online 2012 April 25. doi: 10.7171/jbt.12-2302-003
PMCID:
PMC3336840
Abstract Full Text PDF–801K
Cell-type-specific nuclei purification from whole animals for genome-wide expression and chromatin profiling
Florian A. Steiner, Paul B. Talbert, Sivakanthan Kasinathan, Roger B. Deal, Steven Henikoff
Genome Res. 2012 April; 22(4): 766–777. doi: 10.1101/gr.131748.111
PMCID:
PMC3317158
Abstract Full Text PDF–1.3M
Coordinated regulation of cholinergic motor neuron traits through a conserved terminal selector gene
Paschalis Kratsios, Alberto Stolfi, Michael Levine, Oliver Hobert
Nat Neurosci. Author manuscript; available in PMC 2012 August 1.
Published in final edited form as: Nat Neurosci. 2011 November 27; 15(2): 205–214. doi: 10.1038/nn.2989
PMCID:
PMC3267877
Free in PMC on 2012/08/01
A Transcriptional Program Promotes Remodeling of GABAergic Synapses in Caenorhabditis elegans
Sarah C. Petersen, Joseph D. Watson, Janet E. Richmond, Mihail Sarov, W. W. Walthall, David M. Miller, III
J Neurosci. Author manuscript; available in PMC 2012 April 26.
Published in final edited form as: J Neurosci. 2011 October 26; 31(43): 15362–15375. doi: 10.1523/JNEUROSCI.3181-11.2011
PMCID:
PMC3229156
Abstract Full Text PDF–3.1M
Seeing elegance in the gene regulatory networks of the worm
Eric L. Van Nostrand, Stuart K. Kim
Curr Opin Genet Dev. Author manuscript; available in PMC 2012 December 1.
Published in final edited form as: Curr Opin Genet Dev. 2011 December; 21(6): 776–786. Published online 2011 September 29. doi: 10.1016/j.gde.2011.08.007
PMCID:
PMC3224770
Free in PMC on 2012/12/01
Isolation and Culture of Larval Cells from C. elegans
Sihui Zhang, Diya Banerjee, Jeffrey R. Kuhn
PLoS One. 2011; 6(4): e19505. Published online 2011 April 29. doi: 10.1371/journal.pone.0019505
PMCID:
PMC3084877
Abstract Full Text PDF–1.5M
Isolation and Culture of Larval Cells from C. elegans
Sihui Zhang, Diya Banerjee, Jeffrey R. Kuhn
PLoS One. 2011; 6(4): e19505. Published online 2011 April 29. doi: 10.1371/journal.pone.0019505
PMCID:
PMC3084877
Abstract Full Text PDF–1.5M
A spatial and temporal map of C. elegans gene expression
W. Clay Spencer, Georg Zeller, Joseph D. Watson, Stefan R. Henz, Kathie L. Watkins, Rebecca D. McWhirter, Sarah Petersen, Vipin T. Sreedharan, Christian Widmer, Jeanyoung Jo, Valerie Reinke, Lisa Petrella, Susan Strome, Stephen E. Von Stetina, Menachem Katz, Shai Shaham, Gunnar Rätsch, David M. Miller, III
Genome Res. 2011 February; 21(2): 325–341. doi: 10.1101/gr.114595.110
PMCID:
PMC3032935
Abstract Full Text PDF–2.0M
Homologs of genes expressed in Caenorhabditis elegans GABAergic neurons are also found in the developing mouse forebrain
Elizabeth AD Hammock, Kathie L Eagleson, Susan Barlow, Laurie R Earls, David M Miller, III, Pat Levitt
Neural Dev. 2010; 5: 32. Published online 2010 December 1. doi: 10.1186/1749-8104-5-32
PMCID:
PMC3006369
Abstract Full Text PDF–792K Supplementary Material
Time-lapse imaging and cell-specific expression profiling reveal dynamic branching and molecular determinants of a multi-dendritic nociceptor in C. elegans
Cody J. Smith, Joseph D. Watson, W. Clay Spencer, Tim O’Brien, Byeong Cha, Adi Albeg, Millet Treinin, David M. Miller, III
Dev Biol. Author manuscript; available in PMC 2011 September 1.
Published in final edited form as: Dev Biol. 2010 September 1; 345(1): 18–33. Published online 2010 June 9. doi: 10.1016/j.ydbio.2010.05.502
PMCID:
PMC2919608
Abstract Full Text PDF–3.7M Supplementary Material
Specific roles for DEG/ENaC and TRP channels in touch and thermosensation in C. elegans nociceptors
Marios Chatzigeorgiou, Sungjae Yoo, Joseph D. Watson, Wei-Hsiang Lee, W. Clay Spencer, Katie S. Kindt, Sun Wook Hwang, David M. Miller, III, Millet Treinin, Monica Driscoll, William R. Schafer
Nat Neurosci. Author manuscript; available in PMC 2011 January 1.
Published in final edited form as: Nat Neurosci. 2010 July; 13(7): 861–868. Published online 2010 May 30. doi: 10.1038/nn.2581
PMCID:
PMC2975101
Abstract Full Text PDF–668K Supplementary Material
Single-cell transcriptional analysis of taste sensory neuron pair in Caenorhabditis elegans
Jun Takayama, Serge Faumont, Hirofumi Kunitomo, Shawn R. Lockery, Yuichi Iino
Nucleic Acids Res. 2010 January; 38(1): 131–142. Published online 2010 January. doi: 10.1093/nar/gkp868
PMCID:
PMC2800226
Abstract Full Text PDF–4.8M Supplementary Material
GExplore: a web server for integrated queries of protein domains, gene expression and mutant phenotypes
Harald Hutter, Man-Ping Ng, Nansheng Chen
BMC Genomics. 2009; 10: 529. Published online 2009 November 16. doi: 10.1186/1471-2164-10-529
PMCID:
PMC2779824
Abstract Full Text PDF–814K Supplementary Material
Detailing regulatory networks through large scale data integration
Curtis Huttenhower, K. Tsheko Mutungu, Natasha Indik, Woongcheol Yang, Mark Schroeder, Joshua J. Forman, Olga G. Troyanskaya, Hilary A. Coller
Bioinformatics. 2009 December 15; 25(24): 3267–3274. Published online 2009 October 13. doi: 10.1093/bioinformatics/btp588
PMCID:
PMC2788929
Abstract Full Text PDF–641K Supplementary Material
One Decade Later: What has Gene Expression Profiling Told us About Neuronal Cell Types, Brain Function and Disease?
Elva Díaz
Curr Genomics. 2009 August; 10(5): 318–325. doi: 10.2174/138920209788921029
PMCID:
PMC2729996
Abstract Full Text PDF–118K
FACS-Assisted Microarray Profiling Implicates Novel Genes and Pathways in Zebrafish Gastrointestinal Tract Development
Carsten Stuckenholz, Lili Lu, Prakash Thakur, Naftali Kaminski, Nathan Bahary
Gastroenterology. Author manuscript; available in PMC 2010 October 1.
Published in final edited form as: Gastroenterology. 2009 October; 137(4): 1321–1332. Published online 2009 June 27. doi: 10.1053/j.gastro.2009.06.050
PMCID:
PMC2785077
Abstract Full Text PDF–2.8M Supplementary Material
Global Prediction of Tissue-Specific Gene Expression and Context-Dependent Gene Networks in Caenorhabditis elegans
Maria D. Chikina, Curtis Huttenhower, Coleen T. Murphy, Olga G. Troyanskaya
PLoS Comput Biol. 2009 June; 5(6): e1000417. Published online 2009 June 19. doi: 10.1371/journal.pcbi.1000417
PMCID:
PMC2692103
Abstract Full Text PDF–1.7M Supplementary Material
Comparative Developmental Expression Profiling of Two C. elegans Isolates
Emily J. Capra, Sonja M. Skrovanek, Leonid Kruglyak
PLoS ONE. 2008; 3(12): e4055. Published online 2008 December 31. doi: 10.1371/journal.pone.0004055
PMCID:
PMC2605249
Abstract Full Text PDF–575K Supplementary Material
Wormnet: a crystal ball for Caenorhabditis elegans
Stephen E Von Stetina, Susan E Mango
Genome Biol. 2008; 9(6): 226. Published online 2008 June 2. doi: 10.1186/gb-2008-9-6-226
PMCID:
PMC2481412
Abstract Full Text PDF–211K
Complementary RNA amplification methods enhance microarray identification of transcripts expressed in the C. elegans nervous system
Joseph D Watson, Shenglong Wang, Stephen E Von Stetina, W Clay Spencer, Shawn Levy, Phillip J Dexheimer, Nurith Kurn, Joe Don Heath, David M Miller, III
BMC Genomics. 2008; 9: 84. Published online 2008 February 19. doi: 10.1186/1471-2164-9-84
PMCID:
PMC2263045
Abstract Full Text PDF–2.0M Supplementary Material
The embryonic muscle transcriptome of Caenorhabditis elegans
Rebecca M Fox, Joseph D Watson, Stephen E Von Stetina, Joan McDermott, Thomas M Brodigan, Tetsunari Fukushige, Michael Krause, David M Miller, III
Genome Biol. 2007; 8(9): R188. Published online 2007 September 12. doi: 10.1186/gb-2007-8-9-r188
PMCID:
PMC2375026
Abstract Full Text PDF–1.3M Supplementary Material
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