My NCBISign In
PHOSIDA (phosphorylation site database): management, structural and evolutionary investigation, and prediction of phosphosites
Florian Gnad, Shubin Ren, Juergen Cox, Jesper V Olsen, Boris Macek, Mario Oroshi, Matthias Mann
Genome Biol. 2007; 8(11): R250. Published online 2007 November 26. doi: 10.1186/gb-2007-8-11-r250
PMCID:
PMC2258193
Abstract Full Text PDF–2.0M Supplementary Material

Is Cited by the Following 84 Articles in this Archive:

Proteomic Analysis of Stem Cell Differentiation and Early Development
Dennis van Hoof, Jeroen Krijgsveld, Christine Mummery
Cold Spring Harb Perspect Biol. 2012 March; 4(3): a008177. doi: 10.1101/cshperspect.a008177
PMCID:
PMC3282409
Free in PMC on 2014/03/01
Covalent Tagging of Phosphorylated Peptides By Phosphate-Specific Deoxyribozymes
Amit Sachdeva, Madhavaiah Chandra, Jagadeeswaran Chandrasekar, Scott K. Silverman
Chembiochem. Author manuscript; available in PMC 2013 March 19.
Published in final edited form as: Chembiochem. 2012 March 19; 13(5): 654–657. Published online 2012 February 7. doi: 10.1002/cbic.201200048
PMCID:
PMC3306493
Free in PMC on 2013/03/19
A Dynamic View of Domain-Motif Interactions
Eyal Akiva, Gilgi Friedlander, Zohar Itzhaki, Hanah Margalit
PLoS Comput Biol. 2012 January; 8(1): e1002341. Published online 2012 January 12. doi: 10.1371/journal.pcbi.1002341
Correction in:
PLoS Comput Biol. 2012 January; 8(1): 10.1371/annotation/2e21b1b9-46de-4cbe-a2a4-b4598d90d492.
PMCID:
PMC3257277
Abstract Full Text PDF–532K Supplementary Material Correction
Prediction of Protein Modification Sites of Pyrrolidone Carboxylic Acid Using mRMR Feature Selection and Analysis
Lu-Lu Zheng, Shen Niu, Pei Hao, KaiYan Feng, Yu-Dong Cai, Yixue Li
PLoS One. 2011; 6(12): e28221. Published online 2011 December 9. doi: 10.1371/journal.pone.0028221
PMCID:
PMC3235115
Abstract Full Text PDF–411K Supplementary Material
Boosting serotonin in the brain: is it time to revamp the treatment of depression?
Mariana P Torrente, Alan J Gelenberg, Kent E Vrana
J Psychopharmacol. Author manuscript; available in PMC 2013 June 8.
Published in final edited form as: J Psychopharmacol. 2011 December 8: doi: 10.1177/0269881111430744
PMCID:
PMC3325323
Free in PMC on 2013/06/08
Phosphorylation in protein-protein binding: effect on stability and function
Hafumi Nishi, Kosuke Hashimoto, Anna R. Panchenko
Structure. Author manuscript; available in PMC 2012 December 7.
Published in final edited form as: Structure. 2011 December 7; 19(12): 1807–1815. doi: 10.1016/j.str.2011.09.021
PMCID:
PMC3240861
Free in PMC on 2012/12/07
Restriction of histone gene transcription to S phase by phosphorylation of a chromatin boundary protein
Christoph F. Kurat, Jean-Philippe Lambert, Dewald van Dyk, Kyle Tsui, Harm van Bakel, Supipi Kaluarachchi, Helena Friesen, Pinay Kainth, Corey Nislow, Daniel Figeys, Jeffrey Fillingham, Brenda J. Andrews
Genes Dev. 2011 December 1; 25(23): 2489–2501. doi: 10.1101/gad.173427.111
PMCID:
PMC3243059
Free in PMC on 2012/06/01
Dissecting phosphorylation networks: lessons learned from yeast
Janine Mok, Xiaowei Zhu, Michael Snyder
Expert Rev Proteomics. Author manuscript; available in PMC 2012 October 1.
Published in final edited form as: Expert Rev Proteomics. 2011 December; 8(6): 775–786. doi: 10.1586/epr.11.64
PMCID:
PMC3262144
Free in PMC on 2012/10/01
Proteomics and pluripotency
Justin Brumbaugh, Christopher M. Rose, Douglas H. Phanstiel, James A. Thomson, Joshua J. Coon
Crit Rev Biochem Mol Biol. Author manuscript; available in PMC 2012 December 1.
Published in final edited form as: Crit Rev Biochem Mol Biol. 2011 December; 46(6): 493–506. Published online 2011 October 15. doi: 10.3109/10409238.2011.624491
PMCID:
PMC3223296
Free in PMC on 2012/12/01
Profiling the Trypanosoma cruzi Phosphoproteome
Fabricio K. Marchini, Lyris M. F. de Godoy, Rita C. P. Rampazzo, Daniela P. Pavoni, Christian M. Probst, Florian Gnad, Matthias Mann, Marco A. Krieger
PLoS One. 2011; 6(9): e25381. Published online 2011 September 22. doi: 10.1371/journal.pone.0025381
PMCID:
PMC3178638
Abstract Full Text PDF–402K Supplementary Material
Unbiased Functional Proteomics Strategy for Protein Kinase Inhibitor Validation and Identification of bona fide Protein Kinase Substrates: Application to Identification of EEF1D as a Substrate for CK2
Laszlo Gyenis, James S. Duncan, Jacob P. Turowec, Maria Bretner, David W. Litchfield
J Proteome Res. 2011 November 4; 10(11): 4887–4901. Published online 2011 September 21. doi: 10.1021/pr2008994
PMCID:
PMC3208357
Abstract Full Text PDF–3.0M Supplementary Material
Unbiased Functional Proteomics Strategy for Protein Kinase Inhibitor Validation and Identification of bona fide Protein Kinase Substrates: Application to Identification of EEF1D as a Substrate for CK2
Laszlo Gyenis, James S. Duncan, Jacob P. Turowec, Maria Bretner, David W. Litchfield
J Proteome Res. 2011 November 4; 10(11): 4887–4901. Published online 2011 September 21. doi: 10.1021/pr2008994
PMCID:
PMC3208357
Abstract Full Text PDF–3.0M Supplementary Material
Proteome-wide post-translational modification statistics: frequency analysis and curation of the swiss-prot database
George A. Khoury, Richard C. Baliban, Christodoulos A. Floudas
Sci Rep. 2011; 1: 90. Published online 2011 September 13. doi: 10.1038/srep00090
PMCID:
PMC3201773
Abstract Full Text PDF–1.4M Supplementary Material
Regulation of sororin by Cdk1-mediated phosphorylation
Megan R. Dreier, Michael E. Bekier, 2nd, William R. Taylor
J Cell Sci. 2011 September 1; 124(17): 2976–2987. doi: 10.1242/jcs.085431
PMCID:
PMC3166038
Free in PMC on 2012/09/01
CDK5 Is Essential for Soluble Amyloid β-Induced Degradation of GKAP and Remodeling of the Synaptic Actin Cytoskeleton
Francesco Roselli, Paolo Livrea, Osborne F. X. Almeida
PLoS One. 2011; 6(7): e23097. Published online 2011 July 29. doi: 10.1371/journal.pone.0023097
PMCID:
PMC3146526
Abstract Full Text PDF–4.9M Supplementary Material
Optimal regulatory strategies for metabolic pathways in Escherichia coli depending on protein costs
Frank Wessely, Martin Bartl, Reinhard Guthke, Pu Li, Stefan Schuster, Christoph Kaleta
Mol Syst Biol. 2011; 7: 515. Published online 2011 July 19. doi: 10.1038/msb.2011.46
PMCID:
PMC3159982
Abstract Full Text PDF–565K Supplementary Material
PlantPhos: using maximal dependence decomposition to identify plant phosphorylation sites with substrate site specificity
Tzong-Yi Lee, Neil Arvin Bretaña, Cheng-Tsung Lu
BMC Bioinformatics. 2011; 12: 261. Published online 2011 June 26. doi: 10.1186/1471-2105-12-261
PMCID:
PMC3228547
Abstract Full Text PDF–1.8M Supplementary Material
Mining the TRAF6/p62 interactome for a selective ubiquitination motif
Trafina S Jadhav, Marie W Wooten, Michael C Wooten
BMC Proc. 2011; 5(Suppl 2): S4. Published online 2011 May 28. doi: 10.1186/1753-6561-5-S2-S4
PMCID:
PMC3090762
Abstract Full Text PDF–1.2M
Discovery of Protein Phosphorylation Motifs through Exploratory Data Analysis
Yi-Cheng Chen, Kripamoy Aguan, Chu-Wen Yang, Yao-Tsung Wang, Nikhil R. Pal, I-Fang Chung
PLoS One. 2011; 6(5): e20025. Published online 2011 May 25. doi: 10.1371/journal.pone.0020025
PMCID:
PMC3102080
Abstract Full Text PDF–588K Supplementary Material
Automatic annotation of experimentally derived, evolutionarily conserved post-translational modifications onto multiple genomes
Viswanadham Sridhara, Aron Marchler-Bauer, Stephen H. Bryant, Lewis Y. Geer
Database (Oxford) 2011; 2011: bar019. Published online 2011 May 13. doi: 10.1093/database/bar019
PMCID:
PMC3096321
Abstract Full Text PDF–554K
Quantitative proteomics analysis of phosphorylated proteins in the hippocampus of Alzheimer disease subjects
Fabio Di Domenico, Rukhsana Sultana, Eugenio Barone, Marzia Perluigi, Chiara Cini, Cesare Mancuso, Jian Cai, William M. Pierce, D. Allan Butterfield
J Proteomics. Author manuscript; available in PMC 2012 June 10.
Published in final edited form as: J Proteomics. 2011 June 10; 74(7): 1091–1103. Published online 2011 April 13. doi: 10.1016/j.jprot.2011.03.033
PMCID:
PMC3119855
Free in PMC on 2012/06/10
Evolutionary patterns of phosphorylated serines
Yerbol Z Kurmangaliyev, Alexander Goland, Mikhail S Gelfand
Biol Direct. 2011; 6: 8. Published online 2011 February 9. doi: 10.1186/1745-6150-6-8
PMCID:
PMC3044110
Abstract Full Text PDF–499K
Integrative Features of the Yeast Phosphoproteome and Protein–Protein Interaction Map
Nozomu Yachie, Rintaro Saito, Naoyuki Sugiyama, Masaru Tomita, Yasushi Ishihama
PLoS Comput Biol. 2011 January; 7(1): e1001064. Published online 2011 January 27. doi: 10.1371/journal.pcbi.1001064
PMCID:
PMC3029238
Abstract Full Text PDF–512K Supplementary Material
Rampant Purifying Selection Conserves Positions with Posttranslational Modifications in Human Proteins
Vanessa E. Gray, Sudhir Kumar
Mol Biol Evol. 2011 May; 28(5): 1565–1568. Published online 2011 January 27. doi: 10.1093/molbev/msr013
PMCID:
PMC3107664
Abstract Full Text PDF–417K
Deciphering Human Heat Shock Transcription Factor 1 Regulation via Post-Translational Modification in Yeast
Liliana Batista-Nascimento, Daniel W. Neef, Phillip C. C. Liu, Claudina Rodrigues-Pousada, Dennis J. Thiele
PLoS One. 2011; 6(1): e15976. Published online 2011 January 6. doi: 10.1371/journal.pone.0015976
PMCID:
PMC3017095
Abstract Full Text PDF–892K
Mining recent brain proteomic databases for ion channel phosphosite nuggets
Oscar Cerda, Je-Hyun Baek, James S. Trimmer
J Gen Physiol. 2011 January; 137(1): 3–16. doi: 10.1085/jgp.201010555
PMCID:
PMC3010060
Abstract Full Text PDF–1.2M
The Musite open-source framework for phosphorylation-site prediction
Jianjiong Gao, Dong Xu
BMC Bioinformatics. 2010; 11(Suppl 12): S9. Published online 2010 December 21. doi: 10.1186/1471-2105-11-S12-S9
PMCID:
PMC3040535
Abstract Full Text PDF–752K
Mass Spectrometric Analysis of Lysine Ubiquitylation Reveals Promiscuity at Site Level
Jannie M. R. Danielsen, Kathrine B. Sylvestersen, Simon Bekker-Jensen, Damian Szklarczyk, Jon W. Poulsen, Heiko Horn, Lars J. Jensen, Niels Mailand, Michael L. Nielsen
Mol Cell Proteomics. 2011 March; 10(3): M110.003590. Published online 2010 December 7. doi: 10.1074/mcp.M110.003590
PMCID:
PMC3047152
Abstract Full Text
Mass spectrometry mapping of epidermal growth factor receptor phosphorylation related to oncogenic mutations and tyrosine kinase inhibitor sensitivity
Guolin Zhang, Bin Fang, Richard Z. Liu, Huiyi Lin, Fumi Kinose, Yun Bai, Umut Oguz, Elizabeth R. Remily-Wood, Jiannong Li, Soner Altiok, Steven Eschrich, John Koomen, Eric B. Haura
J Proteome Res. Author manuscript; available in PMC 2012 January 7.
Published in final edited form as: J Proteome Res. 2011 January 7; 10(1): 305–319. Published online 2010 December 3. doi: 10.1021/pr1006203
PMCID:
PMC3050523
Abstract Full Text PDF–2.8M Supplementary Material
PHOSIDA 2011: the posttranslational modification database
Florian Gnad, Jeremy Gunawardena, Matthias Mann
Nucleic Acids Res. 2011 January; 39(Database issue): D253–D260. Published online 2010 November 16. doi: 10.1093/nar/gkq1159
PMCID:
PMC3013726
Abstract Full Text PDF–9.8M
You are here: NCBI > Literature > PubMed Central (PMC)
Write to the Help Desk