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The distributions, mechanisms, and structures of metabolite-binding riboswitches
Jeffrey E Barrick, Ronald R Breaker
Genome Biol. 2007; 8(11): R239. Published online 2007 November 12. doi: 10.1186/gb-2007-8-11-r239
PMCID:
PMC2258182
Abstract Full Text PDF–814K Supplementary Material

Is Cited by the Following 54 Articles in this Archive:

Riboswitch control of Rho-dependent transcription termination
Kerry Hollands, Sergey Proshkin, Svetlana Sklyarova, Vitaly Epshtein, Alexander Mironov, Evgeny Nudler, Eduardo A. Groisman
Proc Natl Acad Sci U S A. 2012 April 3; 109(14): 5376–5381. Published online 2012 March 19. doi: 10.1073/pnas.1112211109
PMCID:
PMC3325659
Abstract Full Text PDF–778K Supplementary Material
Dynamic Energy Landscapes of Riboswitches Help Interpret Conformational Rearrangements and Function
Giulio Quarta, Ken Sin, Tamar Schlick
PLoS Comput Biol. 2012 February; 8(2): e1002368. Published online 2012 February 16. doi: 10.1371/journal.pcbi.1002368
PMCID:
PMC3280964
Abstract Full Text PDF–2.2M Supplementary Material
Atomic-level insights into metabolite recognition and specificity of the SAM-II riboswitch
Urmi Doshi, Jennifer M. Kelley, Donald Hamelberg
RNA. 2012 February; 18(2): 300–307. doi: 10.1261/rna.028779.111
PMCID:
PMC3264916
Abstract Full Text PDF–733K
Riboswitches and the RNA World
Ronald R. Breaker
Cold Spring Harb Perspect Biol. 2012 February; 4(2): a003566. doi: 10.1101/cshperspect.a003566
PMCID:
PMC3281570
Free in PMC on 2014/02/01
Folding energy landscape of the thiamine pyrophosphate riboswitch aptamer
Peter C. Anthony, Christian F. Perez, Cuauhtémoc García-García, Steven M. Block
Proc Natl Acad Sci U S A. 2012 January 31; 109(5): 1485-1489. Published online 2012 January 4. doi: 10.1073/pnas.1115045109
PMCID:
PMC3277107
Free in PMC on 2012/07/31
Riboswitch structure in the ligand-free state
Joseph A. Liberman, Joseph E. Wedekind
Wiley Interdiscip Rev RNA. Author manuscript; available in PMC 2013 May 1.
Published in final edited form as: Wiley Interdiscip Rev RNA. 2012 May; 3(3): 369–384. Published online 2011 September 28. doi: 10.1002/wrna.114
PMCID:
PMC3252462
Free in PMC on 2013/05/01
Genome-wide detection of novel regulatory RNAs in E. coli
Rahul Raghavan, Eduardo A. Groisman, Howard Ochman
Genome Res. 2011 September; 21(9): 1487–1497. doi: 10.1101/gr.119370.110
PMCID:
PMC3166833
Abstract Full Text PDF–601K
Molecular sensing by the aptamer domain of the FMN riboswitch: a general model for ligand binding by conformational selection
Quentin Vicens, Estefanía Mondragón, Robert T. Batey
Nucleic Acids Res. 2011 October; 39(19): 8586–8598. Published online 2011 July 9. doi: 10.1093/nar/gkr565
PMCID:
PMC3201879
Abstract Full Text PDF–7.3M Supplementary Material
Identification of CRISPR and riboswitch related RNAs among novel noncoding RNAs of the euryarchaeon Pyrococcus abyssi
Kounthéa Phok, Annick Moisan, Dana Rinaldi, Nicolas Brucato, Agamemnon J Carpousis, Christine Gaspin, Béatrice Clouet-d'Orval
BMC Genomics. 2011; 12: 312. Published online 2011 June 13. doi: 10.1186/1471-2164-12-312
PMCID:
PMC3124441
Abstract Full Text PDF–1.4M Supplementary Material
Riboswitches: Structures and Mechanisms
Andrew D. Garst, Andrea L. Edwards, Robert T. Batey
Cold Spring Harb Perspect Biol. 2011 June; 3(6): a003533. doi: 10.1101/cshperspect.a003533
PMCID:
PMC3098680
Free in PMC on 2013/06/01
Genetic Control of Biosynthesis and Transport of Riboflavin and Flavin Nucleotides and Construction of Robust Biotechnological Producers
Charles A. Abbas, Andriy A. Sibirny
Microbiol Mol Biol Rev. 2011 June; 75(2): 321–360. doi: 10.1128/MMBR.00030-10
PMCID:
PMC3122625
Free in PMC on 2012/06/01
Riboswitches: discovery of drugs that target bacterial gene-regulatory RNAs
Katherine E. Deigan, Adrian R. Ferré-D’Amaré
Acc Chem Res. Author manuscript; available in PMC 2012 December 20.
Published in final edited form as: Acc Chem Res. 2011 December 20; 44(12): 1329–1338. Published online 2011 May 26. doi: 10.1021/ar200039b
PMCID:
PMC3193592
Free in PMC on 2012/12/20
Comparison of a PreQ1 Riboswitch Aptamer in Metabolite-bound and Free States with Implications for Gene Regulation
Jermaine L. Jenkins, Jolanta Krucinska, Reid M. McCarty, Vahe Bandarian, Joseph E. Wedekind
J Biol Chem. 2011 July 15; 286(28): 24626–24637. Published online 2011 May 18. doi: 10.1074/jbc.M111.230375
PMCID:
PMC3137038
Free in PMC on 2012/07/15
The History of the Discovery of the Molybdenum Cofactor and Novel Aspects of its Biosynthesis in Bacteria
Silke Leimkühler, Margot M. Wuebbens, K.V. Rajagopalan
Coord Chem Rev. Author manuscript; available in PMC 2012 May 1.
Published in final edited form as: Coord Chem Rev. 2011 May 1; 255(9-10): 1129–1144. doi: 10.1016/j.ccr.2010.12.003
PMCID:
PMC3081585
Abstract Full Text PDF–1.0M
Transcription Antitermination by a Phosphorylated Response Regulator and Cobalamin-Dependent Termination at a B12 Riboswitch Contribute to Ethanolamine Utilization in Enterococcus faecalis
Kris Ann Baker, Marta Perego
J Bacteriol. 2011 May; 193(10): 2575–2586. doi: 10.1128/JB.00217-11
PMCID:
PMC3133151
Abstract Full Text PDF–1.9M Supplementary Material
An expanded collection and refined consensus model of glmS ribozymes
Phillip J. McCown, Adam Roth, Ronald R. Breaker
RNA. 2011 April; 17(4): 728–736. doi: 10.1261/rna.2590811
PMCID:
PMC3062183
Abstract Full Text PDF–555K
Folding of the lysine riboswitch: importance of peripheral elements for transcriptional regulation
Simon Blouin, Raja Chinnappan, Daniel A. Lafontaine
Nucleic Acids Res. 2011 April; 39(8): 3373–3387. Published online 2010 December 17. doi: 10.1093/nar/gkq1247
PMCID:
PMC3082890
Abstract Full Text PDF–7.5M Supplementary Material
Moonlighting Glutamate Formiminotransferases Can Functionally Replace 5-Formyltetrahydrofolate Cycloligase
Linda Jeanguenin, Aurora Lara-Núñez, Anne Pribat, Melissa Hamner Mageroy, Jesse F. Gregory, III, Kelly C. Rice, Valérie de Crécy-Lagard, Andrew D. Hanson
J Biol Chem. 2010 December 31; 285(53): 41557–41566. Published online 2010 October 15. doi: 10.1074/jbc.M110.190504
PMCID:
PMC3009883
Abstract Full Text Supplementary Material
SAM Recognition and Conformational Switching Mechanism in the Bacillus subtilis yitJ S Box/SAM-I Riboswitch
Changrui Lu, Fang Ding, Anirban Chowdhury, Vineeta Pradhan, Jerneja Tomsic, W. Michael Holmes, Tina M. Henkin, Ailong Ke
J Mol Biol. Author manuscript; available in PMC 2011 November 22.
Published in final edited form as: J Mol Biol. 2010 December 17; 404(5): 803–818. Published online 2010 October 15. doi: 10.1016/j.jmb.2010.09.059
PMCID:
PMC3222078
Abstract Full Text PDF–2.0M
Synthetic Riboswitches That Induce Gene Expression in Diverse Bacterial Species
Shana Topp, Colleen M. K. Reynoso, Jessica C. Seeliger, Ian S. Goldlust, Shawn K. Desai, Dorothée Murat, Aimee Shen, Aaron W. Puri, Arash Komeili, Carolyn R. Bertozzi, June R. Scott, Justin P. Gallivan
Appl Environ Microbiol. 2010 December; 76(23): 7881–7884. Published online 2010 October 8. doi: 10.1128/AEM.01537-10
Correction in:
Appl Environ Microbiol. 2011 March; 77(6): 2199.
PMCID:
PMC2988590
Abstract Full Text PDF–714K Supplementary Material Correction
Premature terminator analysis sheds light on a hidden world of bacterial transcriptional attenuation
Magali Naville, Daniel Gautheret
Genome Biol. 2010; 11(9): R97. Published online 2010 September 29. doi: 10.1186/gb-2010-11-9-r97
PMCID:
PMC2965389
Abstract Full Text PDF–2.0M Supplementary Material
Impact of nuclear organization and dynamics on epigenetic regulation in the central nervous system: implications for neurological disease states
Irfan A. Qureshi, Mark F. Mehler
Ann N Y Acad Sci. Author manuscript; available in PMC 2011 September 1.
Published in final edited form as: Ann N Y Acad Sci. 2010 September; 1204(Suppl): E20–E37. doi: 10.1111/j.1749-6632.2010.05718.x
PMCID:
PMC2946117
Abstract Full Text PDF–344K
Free state conformational sampling of the SAM-I riboswitch aptamer domain
Colby D Stoddard, Rebecca K. Montange, Scott P. Hennelly, Robert P. Rambo, Karissa Y. Sanbonmatsu, Robert T. Batey
Structure. Author manuscript; available in PMC 2011 July 14.
Published in final edited form as: Structure. 2010 July 14; 18(7): 787–797. doi: 10.1016/j.str.2010.04.006
PMCID:
PMC2917978
Abstract Full Text PDF–3.8M Supplementary Material
Stimulation of −1 programmed ribosomal frameshifting by a metabolite-responsive RNA pseudoknot
Ming-Yuan Chou, Szu-Chieh Lin, Kung-Yao Chang
RNA. 2010 June; 16(6): 1236–1244. doi: 10.1261/rna.1922410
PMCID:
PMC2874175
Abstract Full Text PDF–989K
Evidence for Widespread Gene Control Function by the ydaO Riboswitch Candidate
Kirsten F. Block, Ming C. Hammond, Ronald R. Breaker
J Bacteriol. 2010 August; 192(15): 3983–3989. Published online 2010 May 28. doi: 10.1128/JB.00450-10
PMCID:
PMC2916388
Abstract Full Text PDF–390K Supplementary Material
Ethanolamine Utilization in Bacterial Pathogens: Roles and Regulation
Danielle A. Garsin
Nat Rev Microbiol. Author manuscript; available in PMC 2010 October 6.
Published in final edited form as: Nat Rev Microbiol. 2010 April; 8(4): 290–295. doi: 10.1038/nrmicro2334
PMCID:
PMC2950637
Abstract Full Text PDF–513K
The amazing world of bacterial structured RNAs
Eric Westhof
Genome Biol. 2010; 11(3): 108. Published online 2010 March 15. doi: 10.1186/gb-2010-11-3-108
PMCID:
PMC2864558
Abstract Full Text PDF–495K
Comparative genomics reveals 104 candidate structured RNAs from bacteria, archaea, and their metagenomes
Zasha Weinberg, Joy X Wang, Jarrod Bogue, Jingying Yang, Keith Corbino, Ryan H Moy, Ronald R Breaker
Genome Biol. 2010; 11(3): R31. Published online 2010 March 15. doi: 10.1186/gb-2010-11-3-r31
PMCID:
PMC2864571
Abstract Full Text PDF–1.1M Supplementary Material
Reengineering orthogonally selective riboswitches
Neil Dixon, John N. Duncan, Torsten Geerlings, Mark S. Dunstan, John E. G. McCarthy, David Leys, Jason Micklefield
Proc Natl Acad Sci U S A. 2010 February 16; 107(7): 2830–2835. Published online 2010 January 26. doi: 10.1073/pnas.0911209107
PMCID:
PMC2840279
Abstract Full Text PDF–594K Supplementary Material
EMERGING APPLICATIONS OF RIBOSWITCHES IN CHEMICAL BIOLOGY
Shana Topp, Justin P. Gallivan
ACS Chem Biol. Author manuscript; available in PMC 2011 January 15.
Published in final edited form as: ACS Chem Biol. 2010 January 15; 5(1): 139–148. doi: 10.1021/cb900278x
PMCID:
PMC2811087
Abstract Full Text PDF–940K
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