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Integrative analysis for finding genes and networks involved in diabetes and other complex diseases
Regine Bergholdt, Zenia M Størling, Kasper Lage, E Olof Karlberg, Páll Í Ólason, Mogens Aalund, Jørn Nerup, Søren Brunak, Christopher T Workman, Flemming Pociot
Genome Biol. 2007; 8(11): R253. Published online 2007 November 28. doi: 10.1186/gb-2007-8-11-r253
PMCID:
PMC2258178
Abstract Full Text PDF–2.3M
 Is Cited by the Following 14 Articles in this Archive:
Initial characterization of the human central proteome
Thomas R Burkard, Melanie Planyavsky, Ines Kaupe, Florian P Breitwieser, Tilmann Bürckstümmer, Keiryn L Bennett, Giulio Superti-Furga, Jacques Colinge
BMC Syst Biol. 2011; 5: 17. Published online 2011 January 26. doi: 10.1186/1752-0509-5-17
PMCID:
PMC3039570
Abstract Full Text PDF–2.3M Supplementary Material
Proteins Encoded in Genomic Regions Associated with Immune-Mediated Disease Physically Interact and Suggest Underlying Biology
Elizabeth J. Rossin, Kasper Lage, Soumya Raychaudhuri, Ramnik J. Xavier, Diana Tatar, Yair Benita, International Inflammatory Bowel Disease Genetics Constortium, Chris Cotsapas, Mark J. Daly
PLoS Genet. 2011 January; 7(1): e1001273. Published online 2011 January 13. doi: 10.1371/journal.pgen.1001273
PMCID:
PMC3020935
Abstract Full Text PDF–797K Supplementary Material
Genetics of Type 1 Diabetes: What's Next?
Flemming Pociot, Beena Akolkar, Patrick Concannon, Henry A. Erlich, Cécile Julier, Grant Morahan, Concepcion R. Nierras, John A. Todd, Stephen S. Rich, Jørn Nerup
Diabetes. 2010 July; 59(7): 1561–1571. doi: 10.2337/db10-0076
PMCID:
PMC2889752
Full Text PDF–172K
Dissecting spatio-temporal protein networks driving human heart development and related disorders
Kasper Lage, Kjeld Møllgård, Steven Greenway, Hiroko Wakimoto, Joshua M Gorham, Christopher T Workman, Eske Bendsen, Niclas T Hansen, Olga Rigina, Francisco S Roque, Cornelia Wiese, Vincent M Christoffels, Amy E Roberts, Leslie B Smoot, William T Pu, Patricia K Donahoe, Niels Tommerup, Søren Brunak, Christine E Seidman, Jonathan G Seidman, Lars A Larsen
Mol Syst Biol. 2010; 6: 381. Published online 2010 June 22. doi: 10.1038/msb.2010.36
PMCID:
PMC2913399
Abstract Full Text PDF–2.8M Supplementary Material
Revealing and avoiding bias in semantic similarity scores for protein pairs
Jing Wang, Xianxiao Zhou, Jing Zhu, Chenggui Zhou, Zheng Guo
BMC Bioinformatics. 2010; 11: 290. Published online 2010 May 28. doi: 10.1186/1471-2105-11-290
PMCID:
PMC2903568
Abstract Full Text PDF–2.0M
The Type 1 Diabetes - HLA Susceptibility Interactome - Identification of HLA Genotype-Specific Disease Genes for Type 1 Diabetes
Caroline Brorsson, Niclas Tue Hansen, Regine Bergholdt, Søren Brunak, Flemming Pociot
PLoS One. 2010; 5(3): e9576. Published online 2010 March 5. doi: 10.1371/journal.pone.0009576
PMCID:
PMC2832689
Abstract Full Text PDF–408K
Expression-Based Network Biology Identifies Alteration in Key Regulatory Pathways of Type 2 Diabetes and Associated Risk/Complications
Urmi Sengupta, Sanchaita Ukil, Nevenka Dimitrova, Shipra Agrawal
PLoS One. 2009; 4(12): e8100. Published online 2009 December 7. doi: 10.1371/journal.pone.0008100
PMCID:
PMC2785475
Abstract Full Text PDF–1.3M Supplementary Material
Discovering cancer genes by integrating network and functional properties
Li Li, Kangyu Zhang, James Lee, Shaun Cordes, David P Davis, Zhijun Tang
BMC Med Genomics. 2009; 2: 61. Published online 2009 September 19. doi: 10.1186/1755-8794-2-61
PMCID:
PMC2758898
Abstract Full Text PDF–1.0M Supplementary Material
Analysis of AML genes in dysregulated molecular networks
Eunjung Lee, Hyunchul Jung, Predrag Radivojac, Jong-Won Kim, Doheon Lee
BMC Bioinformatics. 2009; 10(Suppl 9): S2. Published online 2009 September 17. doi: 10.1186/1471-2105-10-S9-S2
PMCID:
PMC2745689
Abstract Full Text PDF–991K
Expression Profiling of Human Genetic and Protein Interaction Networks in Type 1 Diabetes
Regine Bergholdt, Caroline Brorsson, Kasper Lage, Jens Høiriis Nielsen, Søren Brunak, Flemming Pociot
PLoS One. 2009; 4(7): e6250. Published online 2009 July 17. doi: 10.1371/journal.pone.0006250
PMCID:
PMC2707614
Abstract Full Text PDF–435K
Predicting Type 1 Diabetes Candidate Genes using Human Protein-Protein Interaction Networks
Shouguo Gao, Xujing Wang
J Comput Sci Syst Biol. Author manuscript; available in PMC 2010 February 9.
Published in final edited form as: J Comput Sci Syst Biol. 2009 April 1; 2: 133. doi: 10.4172/jcsb.1000025
PMCID:
PMC2818071
Abstract Full Text PDF–788K
Analysis of AML Genes in Dysregulated Molecular Networks
Eunjung Lee, Hyunchul Jung, Predrag Radivojac, Jong-Won Kim, Doheon Lee
Summit on Translat Bioinforma. 2009; 2009: 1–18. Published online 2009 March 1.
PMCID:
PMC3041561
Abstract Full Text PDF–345K
Identification of T1D susceptibility genes within the MHC region by combining protein interaction networks and SNP genotyping data
C. Brorsson, N. T. Hansen, K. Lage, R. Bergholdt, S. Brunak, F. Pociot, Type 1 Diabetes Genetics Consortium
Diabetes Obes Metab. Author manuscript; available in PMC 2009 October 1.
Published in final edited form as: Diabetes Obes Metab. 2009 February; 11(Suppl 1): 60–66. doi: 10.1111/j.1463-1326.2008.01004.x
PMCID:
PMC2755052
Abstract Full Text PDF–326K
Genetic Tools and Algorithms for Gene Discovery in Major Congenital Anomalies
Patricia K. Donahoe, Kristin M. Noonan, Kasper Lage
Birth Defects Res A Clin Mol Teratol. Author manuscript; available in PMC 2010 June 4.
Published in final edited form as: Birth Defects Res A Clin Mol Teratol. 2009 January; 85(1): 6–12. doi: 10.1002/bdra.20546
PMCID:
PMC2880860
Full Text PDF–1.0M
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