Cited by ..

Using protein complexes to predict phenotypic effects of gene mutation

Hunter B Fraser, Joshua B Plotkin

Genome Biol. 2007; 8(11): R252. Published online 2007 November 27. doi: 10.1186/gb-2007-8-11-r252

PMCID:: PMC2258176

Abstract Full Text PDF–560K Supplementary Material

Is Cited by the Following 19 Articles in this Archive:

Modularity in Protein Complex and Drug Interactions Reveals New Polypharmacological Properties

Jose C. Nacher, Jean-Marc Schwartz

PLoS One. 2012; 7(1): e30028. Published online 2012 January 18. doi: 10.1371/journal.pone.0030028

PMCID:: PMC3261189

Abstract Full Text PDF–1.9M Supplementary Material

Prioritizing candidate disease genes by network-based boosting of genome-wide association data

Insuk Lee, U. Martin Blom, Peggy I. Wang, Jung Eun Shim, Edward M. Marcotte

Genome Res. 2011 July; 21(7): 1109–1121. doi: 10.1101/gr.118992.110

PMCID:: PMC3129253

Abstract Full Text PDF–1.3M

Networked-based Characterization of Extracellular Matrix Proteins from Adult Mouse Pulmonary and Aortic Valves

Peggi M. Angel, David Nusinow, Chris B. Brown, Kate Violette, Joey V. Barnett, Bing Zhang, H. Scott Baldwin, Richard M. Caprioli

J Proteome Res. Author manuscript; available in PMC 2011 July 19.

Published in final edited form as: J Proteome Res. 2011 February 4; 10(2): 812–823. Published online 2010 December 22. doi: 10.1021/pr1009806

PMCID:: PMC3139330

Abstract Full Text PDF–2.2M Supplementary Material

A systematic screen for protein–lipid interactions in Saccharomyces cerevisiae

Oriol Gallego, Matthew J Betts, Jelena Gvozdenovic-Jeremic, Kenji Maeda, Christian Matetzki, Carmen Aguilar-Gurrieri, Pedro Beltran-Alvarez, Stefan Bonn, Carlos Fernández-Tornero, Lars Juhl Jensen, Michael Kuhn, Jamie Trott, Vladimir Rybin, Christoph W Müller, Peer Bork, Marko Kaksonen, Robert B Russell, Anne-Claude Gavin

Mol Syst Biol. 2010; 6: 430. Published online 2010 November 30. doi: 10.1038/msb.2010.87

PMCID:: PMC3010107

Abstract Full Text PDF–1.6M Supplementary Material

Predicting genetic modifier loci using functional gene networks

Insuk Lee, Ben Lehner, Tanya Vavouri, Junha Shin, Andrew G. Fraser, Edward M. Marcotte

Genome Res. 2010 August; 20(8): 1143–1153. doi: 10.1101/gr.102749.109

PMCID:: PMC2909577

Abstract Full Text PDF–1.1M

It’s the machine that matters: Predicting gene function and phenotype from protein networks

Peggy I. Wang, Edward M. Marcotte

J Proteomics. Author manuscript; available in PMC 2011 October 10.

Published in final edited form as: J Proteomics. 2010 October 10; 73(11): 2277–2289. Published online 2010 July 15. doi: 10.1016/j.jprot.2010.07.005

PMCID:: PMC2953423

Abstract Full Text PDF–4.2M

Functional and evolutionary correlates of gene constellations in the Drosophila melanogaster genome that deviate from the stereotypical gene architecture

Shuwei Li, Ching-Hua Shih, Michael H Kohn

BMC Genomics. 2010; 11: 322. Published online 2010 May 24. doi: 10.1186/1471-2164-11-322

PMCID:: PMC2891614

Abstract Full Text PDF–1.4M Supplementary Material

The Type 1 Diabetes - HLA Susceptibility Interactome - Identification of HLA Genotype-Specific Disease Genes for Type 1 Diabetes

Caroline Brorsson, Niclas Tue Hansen, Regine Bergholdt, Søren Brunak, Flemming Pociot

PLoS One. 2010; 5(3): e9576. Published online 2010 March 5. doi: 10.1371/journal.pone.0009576

PMCID:: PMC2832689

Abstract Full Text PDF–408K

The power of protein interaction networks for associating genes with diseases

Saket Navlakha, Carl Kingsford

Bioinformatics. 2010 April 15; 26(8): 1057–1063. Published online 2010 February 24. doi: 10.1093/bioinformatics/btq076

PMCID:: PMC2853684

Abstract Full Text PDF–433K Supplementary Material

Rational association of genes with traits using a genome-scale gene network for Arabidopsis thaliana

Insuk Lee, Bindu Ambaru, Pranjali Thakkar, Edward M. Marcotte, Seung Y. Rhee

Nat Biotechnol. Author manuscript; available in PMC 2010 April 20.

Published in final edited form as: Nat Biotechnol. 2010 February; 28(2): 149–156. Published online 2010 January 31. doi: 10.1038/nbt.1603

PMCID:: PMC2857375

Abstract Full Text PDF–2.5M Supplementary Material

Toward the dynamic interactome: it's about time

Teresa M. Przytycka, Mona Singh, Donna K. Slonim

Brief Bioinform. 2010 January; 11(1): 15–29. Published online 2010 January 8. doi: 10.1093/bib/bbp057

PMCID:: PMC2810115

Abstract Full Text PDF–151K

Discovering cancer genes by integrating network and functional properties

Li Li, Kangyu Zhang, James Lee, Shaun Cordes, David P Davis, Zhijun Tang

BMC Med Genomics. 2009; 2: 61. Published online 2009 September 19. doi: 10.1186/1755-8794-2-61

PMCID:: PMC2758898

Abstract Full Text PDF–1.0M Supplementary Material

Genome-wide prioritization of disease genes and identification of disease-disease associations from an integrated human functional linkage network

Bolan Linghu, Evan S Snitkin, Zhenjun Hu, Yu Xia, Charles DeLisi

Genome Biol. 2009; 10(9): R91. Published online 2009 September 3. doi: 10.1186/gb-2009-10-9-r91

PMCID:: PMC2768980

Abstract Full Text PDF–676K Supplementary Material

Linking genes to diseases: it's all in the data

Nicki Tiffin, Miguel A Andrade-Navarro, Carolina Perez-Iratxeta

Genome Med. 2009; 1(8): 77. Published online 2009 August 7. doi: 10.1186/gm77

PMCID:: PMC2768963

Abstract Full Text PDF–216K

Expression Profiling of Human Genetic and Protein Interaction Networks in Type 1 Diabetes

Regine Bergholdt, Caroline Brorsson, Kasper Lage, Jens Høiriis Nielsen, Søren Brunak, Flemming Pociot

PLoS One. 2009; 4(7): e6250. Published online 2009 July 17. doi: 10.1371/journal.pone.0006250

PMCID:: PMC2707614

Abstract Full Text PDF–435K

Translational disease interpretation with molecular networks

Anaïs Baudot, Gonzalo Gómez-López, Alfonso Valencia

Genome Biol. 2009; 10(6): 221. Published online 2009 June 29. doi: 10.1186/gb-2009-10-6-221

PMCID:: PMC2718486

Abstract Full Text PDF–592K

An evolutionary and structural characterization of mammalian protein complex organization

Philip Wong, Sonja Althammer, Andrea Hildebrand, Andreas Kirschner, Philipp Pagel, Bernd Geissler, Pawel Smialowski, Florian Blöchl, Matthias Oesterheld, Thorsten Schmidt, Normann Strack, Fabian J Theis, Andreas Ruepp, Dmitrij Frishman

BMC Genomics. 2008; 9: 629. Published online 2008 December 23. doi: 10.1186/1471-2164-9-629