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Making the most of high-throughput protein-interaction data
Robert Gentleman, Wolfgang Huber
Genome Biol. 2007; 8(10): 112. Published online 2007 November 2. doi: 10.1186/gb-2007-8-10-112
PMCID:
PMC2246275
Abstract Full Text PDF–223K

Is Cited by the Following 11 Articles in this Archive:

SCOWLP update: 3D classification of protein-protein, -peptide, -saccharide and -nucleic acid interactions, and structure-based binding inferences across folds
Joan Teyra, Sergey A Samsonov, Sven Schreiber, M Teresa Pisabarro
BMC Bioinformatics. 2011; 12: 398. Published online 2011 October 13. doi: 10.1186/1471-2105-12-398
PMCID:
PMC3210135
Abstract Full Text PDF–1.1M
Categorizing Biases in High-Confidence High-Throughput Protein-Protein Interaction Data Sets
Xueping Yu, Joseph Ivanic, Vesna Memišević, Anders Wallqvist, Jaques Reifman
Mol Cell Proteomics. 2011 December; 10(12): M111.012500. Published online 2011 August 29. doi: 10.1074/mcp.M111.012500
PMCID:
PMC3237088
Free in PMC on 2012/12/01
Towards a Rigorous Network of Protein-Protein Interactions of the Model Sulfate Reducer Desulfovibrio vulgaris Hildenborough
Swapnil R. Chhabra, Marcin P. Joachimiak, Christopher J. Petzold, Grant M. Zane, Morgan N. Price, Sonia A. Reveco, Veronica Fok, Alyssa R. Johanson, Tanveer S. Batth, Mary Singer, John-Marc Chandonia, Dominique Joyner, Terry C. Hazen, Adam P. Arkin, Judy D. Wall, Anup K. Singh, Jay D. Keasling
PLoS One. 2011; 6(6): e21470. Published online 2011 June 28. doi: 10.1371/journal.pone.0021470
PMCID:
PMC3125180
Abstract Full Text PDF–712K Supplementary Material
Quantitative maps of genetic interactions in yeast - Comparative evaluation and integrative analysis
Rolf O Lindén, Ville-Pekka Eronen, Tero Aittokallio
BMC Syst Biol. 2011; 5: 45. Published online 2011 March 24. doi: 10.1186/1752-0509-5-45
PMCID:
PMC3079637
Abstract Full Text PDF–1.4M Supplementary Material
Assembling a Protein-Protein Interaction Map of the SSU Processome from Existing Datasets
Young H. Lim, J. Michael Charette, Susan J. Baserga
PLoS One. 2011; 6(3): e17701. Published online 2011 March 10. doi: 10.1371/journal.pone.0017701
PMCID:
PMC3053386
Abstract Full Text PDF–674K Supplementary Material
Proteins Encoded in Genomic Regions Associated with Immune-Mediated Disease Physically Interact and Suggest Underlying Biology
Elizabeth J. Rossin, Kasper Lage, Soumya Raychaudhuri, Ramnik J. Xavier, Diana Tatar, Yair Benita, International Inflammatory Bowel Disease Genetics Constortium, Chris Cotsapas, Mark J. Daly
PLoS Genet. 2011 January; 7(1): e1001273. Published online 2011 January 13. doi: 10.1371/journal.pgen.1001273
PMCID:
PMC3020935
Abstract Full Text PDF–797K Supplementary Material
Integrating diverse biological and computational sources for reliable protein-protein interactions
Min Wu, Xiaoli Li, Hon Nian Chua, Chee-Keong Kwoh, See-Kiong Ng
BMC Bioinformatics. 2010; 11(Suppl 7): S8. Published online 2010 October 15. doi: 10.1186/1471-2105-11-S7-S8
PMCID:
PMC2957691
Abstract Full Text PDF–613K
Computational approaches for detecting protein complexes from protein interaction networks: a survey
Xiaoli Li, Min Wu, Chee-Keong Kwoh, See-Kiong Ng
BMC Genomics. 2010; 11(Suppl 1): S3. Published online 2010 February 10. doi: 10.1186/1471-2164-11-S1-S3
PMCID:
PMC2822531
Abstract Full Text
From evidence to inference: probing the evolution of protein interaction networks
Oliver Ratmann, Carsten Wiuf, John W. Pinney
HFSP J. 2009 October; 3(5): 290–306. Published online 2009 October 19. doi: 10.2976/1.3167215
PMCID:
PMC2801530
Abstract Full Text PDF–380K
Rich can get poor: conversion of hub to non-hub proteins
Kyaw Tun, Raghuraj Keshava Rao, Lakshminarayanan Samavedham, Hiroshi Tanaka, Pawan K. Dhar
Syst Synth Biol. 2008 December; 2(3-4): 75–82. Published online 2009 April 28. doi: 10.1007/s11693-009-9024-9
PMCID:
PMC2735643
Abstract Full Text PDF–461K
Literature-curated protein interaction datasets
Michael E Cusick, Haiyuan Yu, Alex Smolyar, Kavitha Venkatesan, Anne-Ruxandra Carvunis, Nicolas Simonis, Jean-François Rual, Heather Borick, Pascal Braun, Matija Dreze, Mary Galli, Junshi Yazaki, David E Hill, Joseph R Ecker, Frederick P Roth, Marc Vidal
Nat Methods. Author manuscript; available in PMC 2009 July 1.
Published in final edited form as: Nat Methods. 2009 January; 6(1): 39–46. doi: 10.1038/nmeth.1284
PMCID:
PMC2683745
Abstract Full Text PDF–784K Supplementary Material
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