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Characterization of probiotic Escherichia coli isolates with a novel pan-genome microarray
Hanni Willenbrock, Peter F Hallin, Trudy M Wassenaar, David W Ussery
Genome Biol. 2007; 8(12): R267. Published online 2007 December 18. doi: 10.1186/gb-2007-8-12-r267
PMCID:
PMC2246269
Abstract Full Text PDF–976K Supplementary Material

Is Cited by the Following 14 Articles in this Archive:

Calculating Orthologs in Bacteria and Archaea: A Divide and Conquer Approach
Mihail R. Halachev, Nicholas J. Loman, Mark J. Pallen
PLoS One. 2011; 6(12): e28388. Published online 2011 December 12. doi: 10.1371/journal.pone.0028388
PMCID:
PMC3236195
Abstract Full Text PDF–1.3M Supplementary Material
High-throughput microarray technology in diagnostics of enterobacteria based on genome-wide probe selection and regression analysis
Torben Friedrich, Sven Rahmann, Wilfried Weigel, Wolfgang Rabsch, Angelika Fruth, Eliora Ron, Florian Gunzer, Thomas Dandekar, Jörg Hacker, Tobias Müller, Ulrich Dobrindt
BMC Genomics. 2010; 11: 591. Published online 2010 October 21. doi: 10.1186/1471-2164-11-591
PMCID:
PMC3017858
Abstract Full Text PDF–2.1M Supplementary Material
Probing the pan-genome of Listeria monocytogenes: new insights into intraspecific niche expansion and genomic diversification
Xiangyu Deng, Adam M Phillippy, Zengxin Li, Steven L Salzberg, Wei Zhang
BMC Genomics. 2010; 11: 500. Published online 2010 September 16. doi: 10.1186/1471-2164-11-500
PMCID:
PMC2996996
Abstract Full Text PDF–3.2M Supplementary Material
Pan-genome sequence analysis using Panseq: an online tool for the rapid analysis of core and accessory genomic regions
Chad Laing, Cody Buchanan, Eduardo N Taboada, Yongxiang Zhang, Andrew Kropinski, Andre Villegas, James E Thomas, Victor PJ Gannon
BMC Bioinformatics. 2010; 11: 461. Published online 2010 September 15. doi: 10.1186/1471-2105-11-461
PMCID:
PMC2949892
Abstract Full Text PDF–614K Supplementary Material
Genomic comparisons of Brucella spp. and closely related bacteria using base compositional and proteome based methods
Jon Bohlin, Lars Snipen, Axel Cloeckaert, Karin Lagesen, David Ussery, Anja B Kristoffersen, Jacques Godfroid
BMC Evol Biol. 2010; 10: 249. Published online 2010 August 13. doi: 10.1186/1471-2148-10-249
PMCID:
PMC2928237
Abstract Full Text PDF–5.3M Supplementary Material
Analysis of intra-genomic GC content homogeneity within prokaryotes
Jon Bohlin, Lars Snipen, Simon P Hardy, Anja B Kristoffersen, Karin Lagesen, Torunn Dønsvik, Eystein Skjerve, David W Ussery
BMC Genomics. 2010; 11: 464. Published online 2010 August 6. doi: 10.1186/1471-2164-11-464
PMCID:
PMC3091660
Abstract Full Text PDF–613K
Pan-genome analysis provides much higher strain typing resolution than multi-locus sequence typing
Barry G. Hall, Garth D. Ehrlich, Fen Z. Hu
Microbiology. 2010 April; 156(Pt 4): 1060–1068. doi: 10.1099/mic.0.035188-0
PMCID:
PMC2889442
Abstract Full Text PDF–137K Supplementary Material
PanCGHweb: a web tool for genotype calling in pangenome CGH data
Jumamurat R. Bayjanov, Roland J. Siezen, Sacha A. F. T. van Hijum
Bioinformatics. 2010 May 1; 26(9): 1256–1257. Published online 2010 March 10. doi: 10.1093/bioinformatics/btq103
PMCID:
PMC2859125
Abstract Full Text PDF–139K
Efficient oligonucleotide probe selection for pan-genomic tiling arrays
Adam M Phillippy, Xiangyu Deng, Wei Zhang, Steven L Salzberg
BMC Bioinformatics. 2009; 10: 293. Published online 2009 September 16. doi: 10.1186/1471-2105-10-293
PMCID:
PMC2753849
Abstract Full Text PDF–311K
Microbial comparative pan-genomics using binomial mixture models
Lars Snipen, Trygve Almøy, David W Ussery
BMC Genomics. 2009; 10: 385. Published online 2009 August 19. doi: 10.1186/1471-2164-10-385
PMCID:
PMC2907702
Abstract Full Text PDF–452K
Pervasive, genome-wide positive selection leading to functional divergence in the bacterial genus Campylobacter
Tristan Lefébure, Michael J. Stanhope
Genome Res. 2009 July; 19(7): 1224–1232. doi: 10.1101/gr.089250.108
PMCID:
PMC2704436
Abstract Full Text PDF–673K
Organised Genome Dynamics in the Escherichia coli Species Results in Highly Diverse Adaptive Paths
Marie Touchon, Claire Hoede, Olivier Tenaillon, Valérie Barbe, Simon Baeriswyl, Philippe Bidet, Edouard Bingen, Stéphane Bonacorsi, Christiane Bouchier, Odile Bouvet, Alexandra Calteau, Hélène Chiapello, Olivier Clermont, Stéphane Cruveiller, Antoine Danchin, Médéric Diard, Carole Dossat, Meriem El Karoui, Eric Frapy, Louis Garry, Jean Marc Ghigo, Anne Marie Gilles, James Johnson, Chantal Le Bouguénec, Mathilde Lescat, Sophie Mangenot, Vanessa Martinez-Jéhanne, Ivan Matic, Xavier Nassif, Sophie Oztas, Marie Agnès Petit, Christophe Pichon, Zoé Rouy, Claude Saint Ruf, Dominique Schneider, Jérôme Tourret, Benoit Vacherie, David Vallenet, Claudine Médigue, Eduardo P. C. Rocha, Erick Denamur
PLoS Genet. 2009 January; 5(1): e1000344. Published online 2009 January 23. doi: 10.1371/journal.pgen.1000344
PMCID:
PMC2617782
Abstract Full Text PDF–803K Supplementary Material
The convergence of carbohydrate active gene repertoires in human gut microbes
Catherine A. Lozupone, Micah Hamady, Brandi L. Cantarel, Pedro M. Coutinho, Bernard Henrissat, Jeffrey I. Gordon, Rob Knight
Proc Natl Acad Sci U S A. 2008 September 30; 105(39): 15076–15081. Published online 2008 September 19. doi: 10.1073/pnas.0807339105
PMCID:
PMC2546442
Abstract Full Text PDF–1.6M Supplementary Material
Transcriptomics and adaptive genomics of the asymptomatic bacteriuria Escherichia coli strain 83972
Viktoria Hancock, Aswin S. Seshasayee, David W. Ussery, Nicholas M. Luscombe, Per Klemm
Mol Genet Genomics. 2008 May; 279(5): 523–534. Published online 2008 March 4. doi: 10.1007/s00438-008-0330-9
PMCID:
PMC2329726
Abstract Full Text PDF–709K
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