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Broad network-based predictability of Saccharomyces cerevisiae gene loss-of-function phenotypes
Kriston L McGary, Insuk Lee, Edward M Marcotte
Genome Biol. 2007; 8(12): R258. Published online 2007 December 5. doi: 10.1186/gb-2007-8-12-r258
PMCID:
PMC2246260
Abstract Full Text PDF–1.4M
 Is Cited by the Following 17 Articles in this Archive:
Systematic Search for Recipes to Generate Induced Pluripotent Stem Cells
Rui Chang, Robert Shoemaker, Wei Wang
PLoS Comput Biol. 2011 December; 7(12): e1002300. Published online 2011 December 22. doi: 10.1371/journal.pcbi.1002300
PMCID:
PMC3245295
Abstract Full Text PDF–765K Supplementary Material
Prioritizing candidate disease genes by network-based boosting of genome-wide association data
Insuk Lee, U. Martin Blom, Peggy I. Wang, Jung Eun Shim, Edward M. Marcotte
Genome Res. 2011 July; 21(7): 1109–1121. doi: 10.1101/gr.118992.110
PMCID:
PMC3129253
Abstract Full Text PDF–1.3M
A Gene-Phenotype Network for the Laboratory Mouse and Its Implications for Systematic Phenotyping
Octavio Espinosa, John M. Hancock
PLoS One. 2011; 6(5): e19693. Published online 2011 May 19. doi: 10.1371/journal.pone.0019693
PMCID:
PMC3098258
Abstract Full Text PDF–926K Supplementary Material
Recipes and mechanisms of cellular reprogramming: a case study on budding yeast Saccharomyces cerevisiae
Shengchao Ding, Wei Wang
BMC Syst Biol. 2011; 5: 50. Published online 2011 April 12. doi: 10.1186/1752-0509-5-50
PMCID:
PMC3094211
Abstract Full Text PDF–3.9M Supplementary Material
Predicting Protein Phenotypes Based on Protein-Protein Interaction Network
Lele Hu, Tao Huang, Xiao-Jun Liu, Yu-Dong Cai
PLoS One. 2011; 6(3): e17668. Published online 2011 March 10. doi: 10.1371/journal.pone.0017668
PMCID:
PMC3053377
Abstract Full Text PDF–201K Supplementary Material
Functional Genomics Complements Quantitative Genetics in Identifying Disease-Gene Associations
Yuanfang Guan, Cheryl L. Ackert-Bicknell, Braden Kell, Olga G. Troyanskaya, Matthew A. Hibbs
PLoS Comput Biol. 2010 November; 6(11): e1000991. Published online 2010 November 11. doi: 10.1371/journal.pcbi.1000991
PMCID:
PMC2978695
Abstract Full Text PDF–1.0M Supplementary Material
Prediction of quantitative phenotypes based on genetic networks: a case study in yeast sporulation
Li Shen, Iouri Chepelev, Jie Liu, Wei Wang
BMC Syst Biol. 2010; 4: 128. Published online 2010 September 10. doi: 10.1186/1752-0509-4-128
PMCID:
PMC2944141
Abstract Full Text PDF–558K Supplementary Material
Predicting genetic modifier loci using functional gene networks
Insuk Lee, Ben Lehner, Tanya Vavouri, Junha Shin, Andrew G. Fraser, Edward M. Marcotte
Genome Res. 2010 August; 20(8): 1143–1153. doi: 10.1101/gr.102749.109
PMCID:
PMC2909577
Abstract Full Text PDF–1.1M
It’s the machine that matters: Predicting gene function and phenotype from protein networks
Peggy I. Wang, Edward M. Marcotte
J Proteomics. Author manuscript; available in PMC 2011 October 10.
Published in final edited form as: J Proteomics. 2010 October 10; 73(11): 2277–2289. Published online 2010 July 15. doi: 10.1016/j.jprot.2010.07.005
PMCID:
PMC2953423
Abstract Full Text PDF–4.2M
Systematic discovery of nonobvious human disease models through orthologous phenotypes
Kriston L. McGary, Tae Joo Park, John O. Woods, Hye Ji Cha, John B. Wallingford, Edward M. Marcotte
Proc Natl Acad Sci U S A. 2010 April 6; 107(14): 6544–6549. Published online 2010 March 22. doi: 10.1073/pnas.0910200107
PMCID:
PMC2851946
Abstract Full Text PDF–1.0M Supplementary Material
Collaboratively charting the gene-to-phenotype network of human congenital heart defects
Roland Barriot, Jeroen Breckpot, Bernard Thienpont, Sylvain Brohée, Steven Van Vooren, Bert Coessens, Leon-Charles Tranchevent, Peter Van Loo, Marc Gewillig, Koenraad Devriendt, Yves Moreau
Genome Med. 2010; 2(3): 16. Published online 2010 March 1. doi: 10.1186/gm137
PMCID:
PMC2873794
Abstract Full Text PDF–1007K Supplementary Material
Rational association of genes with traits using a genome-scale gene network for Arabidopsis thaliana
Insuk Lee, Bindu Ambaru, Pranjali Thakkar, Edward M. Marcotte, Seung Y. Rhee
Nat Biotechnol. Author manuscript; available in PMC 2010 April 20.
Published in final edited form as: Nat Biotechnol. 2010 February; 28(2): 149–156. Published online 2010 January 31. doi: 10.1038/nbt.1603
PMCID:
PMC2857375
Abstract Full Text PDF–2.5M Supplementary Material
Rational Extension of the Ribosome Biogenesis Pathway Using Network-Guided Genetics
Zhihua Li, Insuk Lee, Emily Moradi, Nai-Jung Hung, Arlen W. Johnson, Edward M. Marcotte
PLoS Biol. 2009 October; 7(10): e1000213. Published online 2009 October 6. doi: 10.1371/journal.pbio.1000213
PMCID:
PMC2749941
Abstract Full Text PDF–7.2M Supplementary Material
Genome-wide prioritization of disease genes and identification of disease-disease associations from an integrated human functional linkage network
Bolan Linghu, Evan S Snitkin, Zhenjun Hu, Yu Xia, Charles DeLisi
Genome Biol. 2009; 10(9): R91. Published online 2009 September 3. doi: 10.1186/gb-2009-10-9-r91
PMCID:
PMC2768980
Abstract Full Text PDF–676K Supplementary Material
Buffering by gene duplicates: an analysis of molecular correlates and evolutionary conservation
Kevin Hannay, Edward M Marcotte, Christine Vogel
BMC Genomics. 2008; 9: 609. Published online 2008 December 16. doi: 10.1186/1471-2164-9-609
PMCID:
PMC2627895
Abstract Full Text PDF–1.7M Supplementary Material
Network Hubs Buffer Environmental Variation in Saccharomyces cerevisiae
Sasha F Levy, Mark L Siegal
PLoS Biol. 2008 November; 6(11): e264. Published online 2008 November 4. doi: 10.1371/journal.pbio.0060264
PMCID:
PMC2577700
Abstract Full Text PDF–883K Supplementary Material
Network-based global inference of human disease genes
Xuebing Wu, Rui Jiang, Michael Q Zhang, Shao Li
Mol Syst Biol. 2008; 4: 189. Published online 2008 May 6. doi: 10.1038/msb.2008.27
PMCID:
PMC2424293
Abstract Full Text PDF–3.2M Supplementary Material
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