Logo of procamiasympLink to Publisher's site
Proc AMIA Symp. 2002 : 777–781.
PMCID: PMC2244188

A successful technique for removing names in pathology reports using an augmented search and replace method.

Abstract

The ability to access large amounts of de-identified clinical data would facilitate epidemiologic and retrospective research. Previously described de-identification methods require knowledge of natural language processing or have not been made available to the public. We take advantage of the fact that the vast majority of proper names in pathology reports occur in pairs. In rare cases where one proper name is by itself, it is preceded or followed by an affix that identifies it as a proper name (Mrs., Dr., PhD). We created a tool based on this observation using substitution methods that was easy to implement and was largely based on publicly available data sources. We compiled a Clinical and Common Usage Word (CCUW) list as well as a fairly comprehensive proper name list. Despite the large overlap between these two lists, we were able to refine our methods to achieve accuracy similar to previous attempts at de-identification. Our method found 98.7% of 231 proper names in the narrative sections of pathology reports. Three single proper names were missed out of 1001 pathology reports (0.3%, no first name/last name pairs). It is unlikely that identification could be implied from this information. We will continue to refine our methods, specifically working to improve the quality of our CCUW and proper name lists to obtain higher levels of accuracy.

Full text

Full text is available as a scanned copy of the original print version. Get a printable copy (PDF file) of the complete article (1.0M), or click on a page image below to browse page by page. Links to PubMed are also available for Selected References.

Selected References

These references are in PubMed. This may not be the complete list of references from this article.
  • Sweeney L. Guaranteeing anonymity when sharing medical data, the Datafly System. Proc AMIA Annu Fall Symp. 1997:51–55. [PMC free article] [PubMed]
  • Sweeney L. Replacing personally-identifying information in medical records, the Scrub system. Proc AMIA Annu Fall Symp. 1996:333–337. [PMC free article] [PubMed]
  • Ruch P, Baud RH, Rassinoux AM, Bouillon P, Robert G. Medical document anonymization with a semantic lexicon. Proc AMIA Symp. 2000:729–733. [PMC free article] [PubMed]

Articles from Proceedings of the AMIA Symposium are provided here courtesy of American Medical Informatics Association

Formats:

Related citations in PubMed

See reviews...See all...

Cited by other articles in PMC

See all...

Links

  • PubMed
    PubMed
    PubMed citations for these articles

Recent Activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...