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Optimal design and validation of antiviral siRNA for targeting HIV-1
Yuki Naito, Kyoko Nohtomi, Toshinari Onogi, Rie Uenishi, Kumiko Ui-Tei, Kaoru Saigo, Yutaka Takebe
Retrovirology. 2007; 4: 80. Published online 2007 November 8. doi: 10.1186/1742-4690-4-80
PMCID:
PMC2204037
Abstract Full Text PDF–574K Supplementary Material

Is Cited by the Following 13 Articles in this Archive:

SHAPE-directed Discovery of Potent shRNA Inhibitors of HIV-1
Justin T Low, Stefanie A Knoepfel, Joseph M Watts, Olivier ter Brake, Ben Berkhout, Kevin M Weeks
Mol Ther. 2012 April; 20(4): 820–828. Published online 2012 February 7. doi: 10.1038/mt.2011.299
PMCID:
PMC3321596
Free in PMC on 2013/04/01
Improved siRNA/shRNA Functionality by Mismatched Duplex
Haoquan Wu, Hongming Ma, Chunting Ye, Danielle Ramirez, Shuiping Chen, Jessica Montoya, Premlata Shankar, Xiaozhong A. Wang, N. Manjunath
PLoS One. 2011; 6(12): e28580. Published online 2011 December 9. doi: 10.1371/journal.pone.0028580
PMCID:
PMC3235145
Abstract Full Text PDF–441K Supplementary Material
VIRsiRNAdb: a curated database of experimentally validated viral siRNA/shRNA
Nishant Thakur, Abid Qureshi, Manoj Kumar
Nucleic Acids Res. 2012 January; 40(D1): D230–D236. Published online 2011 December 1. doi: 10.1093/nar/gkr1147
PMCID:
PMC3245049
Abstract Full Text PDF–5.1M
HIVsirDB: A Database of HIV Inhibiting siRNAs
Atul Tyagi, Firoz Ahmed, Nishant Thakur, Arun Sharma, Gajendra P. S. Raghava, Manoj Kumar
PLoS One. 2011; 6(10): e25917. Published online 2011 October 11. doi: 10.1371/journal.pone.0025917
PMCID:
PMC3191155
Abstract Full Text PDF–382K Supplementary Material
A comparison of multiple shRNA expression methods for combinatorial RNAi
Glen J Mcintyre, Allison J Arndt, Kirsten M Gillespie, Wendy M Mak, Gregory C Fanning
Genet Vaccines Ther. 2011; 9: 9. Published online 2011 April 17. doi: 10.1186/1479-0556-9-9
PMCID:
PMC3098768
Abstract Full Text PDF–472K
Multiple shRNA combinations for near-complete coverage of all HIV-1 strains
Glen J Mcintyre, Jennifer L Groneman, Yi-Hsin Yu, Anna Tran, Tanya L Applegate
AIDS Res Ther. 2011; 8: 1. Published online 2011 January 13. doi: 10.1186/1742-6405-8-1
PMCID:
PMC3033792
Abstract Full Text PDF–830K Supplementary Material
Multiple shRNA combinations for near-complete coverage of all HIV-1 strains
Glen J Mcintyre, Jennifer L Groneman, Yi-Hsin Yu, Anna Tran, Tanya L Applegate
AIDS Res Ther. 2011; 8: 1. Published online 2011 January 13. doi: 10.1186/1742-6405-8-1
PMCID:
PMC3033792
Abstract Full Text PDF–830K Supplementary Material
An RNAi in silico approach to find an optimal shRNA cocktail against HIV-1
María C Méndez-Ortega, Silvia Restrepo, Luis M Rodríguez-R, Iván Pérez, Juan C Mendoza, Andrés P Martínez, Roberto Sierra, Gloria J Rey-Benito
Virol J. 2010; 7: 369. Published online 2010 December 20. doi: 10.1186/1743-422X-7-369
PMCID:
PMC3022682
Abstract Full Text PDF–1.6M Supplementary Material
In silico modeling indicates the development of HIV-1 resistance to multiple shRNA gene therapy differs to standard antiretroviral therapy
Tanya Lynn Applegate, Donald John Birkett, Glen John Mcintyre, Angel Belisario Jaramillo, Geoff Symonds, John Michael Murray
Retrovirology. 2010; 7: 83. Published online 2010 October 9. doi: 10.1186/1742-4690-7-83
PMCID:
PMC2959037
Abstract Full Text PDF–599K
RNAi and small interfering RNAs in human disease therapeutic applications
Monica R. Lares, John J. Rossi, Dominique L. Ouellet
Trends Biotechnol. Author manuscript; available in PMC 2011 November 1.
Published in final edited form as: Trends Biotechnol. 2010 November; 28(11): 570–579. Published online 2010 September 15. doi: 10.1016/j.tibtech.2010.07.009
PMCID:
PMC2955826
Abstract Full Text PDF–947K
Cassette deletion in multiple shRNA lentiviral vectors for HIV-1 and its impact on treatment success
Glen J Mcintyre, Yi-Hsin Yu, Anna Tran, Angel B Jaramillo, Allison J Arndt, Michelle L Millington, Maureen P Boyd, Fiona A Elliott, Sylvie W Shen, John M Murray, Tanya L Applegate
Virol J. 2009; 6: 184. Published online 2009 October 30. doi: 10.1186/1743-422X-6-184
PMCID:
PMC2775741
Abstract Full Text PDF–1.2M
96 shRNAs designed for maximal coverage of HIV-1 variants
Glen John Mcintyre, Jennifer Lynne Groneman, Yi-Hsin Yu, Angel Jaramillo, Sylvie Shen, Tanya Lynn Applegate
Retrovirology. 2009; 6: 55. Published online 2009 June 4. doi: 10.1186/1742-4690-6-55
PMCID:
PMC2698899
Abstract Full Text PDF–568K Supplementary Material
A Genome-wide Short Hairpin RNA Screening of Jurkat T-cells for Human Proteins Contributing to Productive HIV-1 Replication
Man Lung Yeung, Laurent Houzet, Venkat S. R. K. Yedavalli, Kuan-Teh Jeang
J Biol Chem. 2009 July 17; 284(29): 19463–19473. Published online 2009 May 20. doi: 10.1074/jbc.M109.010033
PMCID:
PMC2740572
Abstract Full Text Supplementary Material
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