My NCBISign In
Gene duplication and paleopolyploidy in soybean and the implications for whole genome sequencing
Jessica A Schlueter, Jer-Young Lin, Shannon D Schlueter, Iryna F Vasylenko-Sanders, Shweta Deshpande, Jing Yi, Majesta O'Bleness, Bruce A Roe, Rex T Nelson, Brian E Scheffler, Scott A Jackson, Randy C Shoemaker
BMC Genomics. 2007; 8: 330. Published online 2007 September 19. doi: 10.1186/1471-2164-8-330
PMCID:
PMC2077340
Abstract Full Text PDF–794K Supplementary Material

Is Cited by the Following 22 Articles in this Archive:

Novel SSR Markers from BAC-End Sequences, DArT Arrays and a Comprehensive Genetic Map with 1,291 Marker Loci for Chickpea (Cicer arietinum L.)
Mahendar Thudi, Abhishek Bohra, Spurthi N. Nayak, Nicy Varghese, Trushar M. Shah, R. Varma Penmetsa, Nepolean Thirunavukkarasu, Srivani Gudipati, Pooran M. Gaur, Pawan L. Kulwal, Hari D. Upadhyaya, Polavarapu B. KaviKishor, Peter Winter, Günter Kahl, Christopher D. Town, Andrzej Kilian, Douglas R. Cook, Rajeev K. Varshney
PLoS One. 2011; 6(11): e27275. Published online 2011 November 15. doi: 10.1371/journal.pone.0027275
PMCID:
PMC3216927
Abstract Full Text PDF–1.1M Supplementary Material
Changes in Twelve Homoeologous Genomic Regions in Soybean following Three Rounds of Polyploidy
Andrew J. Severin, Steven B. Cannon, Michelle M. Graham, David Grant, Randy C. Shoemaker
Plant Cell. 2011 September; 23(9): 3129–3136. Published online 2011 September 13. doi: 10.1105/tpc.111.089573
PMCID:
PMC3203428
Free in PMC on 2012/09/01
Analysis of BAC-end sequences (BESs) and development of BES-SSR markers for genetic mapping and hybrid purity assessment in pigeonpea (Cajanus spp.)
Abhishek Bohra, Anuja Dubey, Rachit K Saxena, R Varma Penmetsa, KN Poornima, Naresh Kumar, Andrew D Farmer, Gudipati Srivani, Hari D Upadhyaya, Ragini Gothalwal, S Ramesh, Dhiraj Singh, Kulbhushan Saxena, PB Kavi Kishor, Nagendra K Singh, Christopher D Town, Gregory D May, Douglas R Cook, Rajeev K Varshney
BMC Plant Biol. 2011; 11: 56. Published online 2011 March 29. doi: 10.1186/1471-2229-11-56
PMCID:
PMC3079640
Abstract Full Text PDF–995K Supplementary Material
The Soybean Rhg1 Locus for Resistance to the Soybean Cyst Nematode Heterodera glycines Regulates the Expression of a Large Number of Stress- and Defense-Related Genes in Degenerating Feeding Cells
Pramod Kaitheri Kandoth, Nagabhushana Ithal, Justin Recknor, Tom Maier, Dan Nettleton, Thomas J. Baum, Melissa G. Mitchum
Plant Physiol. 2011 April; 155(4): 1960–1975. Published online 2011 February 18. doi: 10.1104/pp.110.167536
PMCID:
PMC3091121
Abstract Full Text PDF–1.0M
Genome-Wide Expression Profiling of Soybean Two-Component System Genes in Soybean Root and Shoot Tissues under Dehydration Stress
Dung Tien Le, Rie Nishiyama, Yasuko Watanabe, Keiichi Mochida, Kazuko Yamaguchi-Shinozaki, Kazuo Shinozaki, Lam-Son Phan Tran
DNA Res. 2011 February; 18(1): 17–29. Published online 2011 January 4. doi: 10.1093/dnares/dsq032
PMCID:
PMC3041507
Abstract Full Text PDF–863K Supplementary Material
Polyploid genome of Camelina sativa revealed by isolation of fatty acid synthesis genes
Carolyn Hutcheon, Renata F Ditt, Mark Beilstein, Luca Comai, Jesara Schroeder, Elianna Goldstein, Christine K Shewmaker, Thu Nguyen, Jay De Rocher, Jack Kiser
BMC Plant Biol. 2010; 10: 233. Published online 2010 October 27. doi: 10.1186/1471-2229-10-233
PMCID:
PMC3017853
Abstract Full Text PDF–3.3M Supplementary Material
Genome-Wide Analysis of Two-Component Systems and Prediction of Stress-Responsive Two-Component System Members in Soybean
Keiichi Mochida, Takuhiro Yoshida, Tetsuya Sakurai, Kazuko Yamaguchi-Shinozaki, Kazuo Shinozaki, Lam-Son Phan Tran
DNA Res. 2010 October; 17(5): 303–324. Published online 2010 September 3. doi: 10.1093/dnares/dsq021
PMCID:
PMC2955714
Abstract Full Text PDF–640K Supplementary Material
Structural and Functional Divergence of a 1-Mb Duplicated Region in the Soybean (Glycine max) Genome and Comparison to an Orthologous Region from Phaseolus vulgaris
Jer-Young Lin, Robert M. Stupar, Christian Hans, David L. Hyten, Scott A. Jackson
Plant Cell. 2010 August; 22(8): 2545–2561. Published online 2010 August 20. doi: 10.1105/tpc.110.074229
PMCID:
PMC2947175
Abstract Full Text PDF–1.1M Supplementary Material
Polyploidy Did Not Predate the Evolution of Nodulation in All Legumes
Steven B. Cannon, Dan Ilut, Andrew D. Farmer, Sonja L. Maki, Gregory D. May, Susan R. Singer, Jeff J. Doyle
PLoS One. 2010; 5(7): e11630. Published online 2010 July 16. doi: 10.1371/journal.pone.0011630
PMCID:
PMC2905438
Abstract Full Text PDF–521K Supplementary Material
A Fluorescence in Situ Hybridization System for Karyotyping Soybean
Seth D. Findley, Steven Cannon, Kranthi Varala, Jianchang Du, Jianxin Ma, Matthew E. Hudson, James A. Birchler, Gary Stacey
Genetics. 2010 July; 185(3): 727–744. doi: 10.1534/genetics.109.113753
PMCID:
PMC2907198
Abstract Full Text PDF–4.1M
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Marc Libault, Andrew Farmer, Laurent Brechenmacher, Jenny Drnevich, Raymond J. Langley, Damla D. Bilgin, Osman Radwan, David J. Neece, Steven J. Clough, Gregory D. May, Gary Stacey
Plant Physiol. 2010 February; 152(2): 541–552. doi: 10.1104/pp.109.148379
PMCID:
PMC2815892
Abstract Full Text PDF–1.1M Supplementary Material
SoyDB: a knowledge database of soybean transcription factors
Zheng Wang, Marc Libault, Trupti Joshi, Babu Valliyodan, Henry T Nguyen, Dong Xu, Gary Stacey, Jianlin Cheng
BMC Plant Biol. 2010; 10: 14. Published online 2010 January 18. doi: 10.1186/1471-2229-10-14
PMCID:
PMC2826334
Abstract Full Text PDF–1.4M Supplementary Material
Genomic and Expression Plasticity of Polyploidy
Scott Jackson, Z. Jeffrey Chen
Curr Opin Plant Biol. Author manuscript; available in PMC 2011 April 1.
Published in final edited form as: Curr Opin Plant Biol. 2010 April; 13(2): 153–159. Published online 2009 December 22. doi: 10.1016/j.pbi.2009.11.004
PMCID:
PMC2880571
Abstract Full Text PDF–713K
In silico Analysis of Transcription Factor Repertoire and Prediction of Stress Responsive Transcription Factors in Soybean
Keiichi Mochida, Takuhiro Yoshida, Tetsuya Sakurai, Kazuko Yamaguchi-Shinozaki, Kazuo Shinozaki, Lam-Son Phan Tran
DNA Res. 2009 December; 16(6): 353–369. Published online 2009 November 2. doi: 10.1093/dnares/dsp023
PMCID:
PMC2780956
Abstract Full Text PDF–412K Supplementary Material
Large-Scale Analysis of Putative Soybean Regulatory Gene Expression Identifies a Myb Gene Involved in Soybean Nodule Development
Marc Libault, Trupti Joshi, Kaori Takahashi, Andrea Hurley-Sommer, Kari Puricelli, Sean Blake, Richard E. Finger, Christopher G. Taylor, Dong Xu, Henry T. Nguyen, Gary Stacey
Plant Physiol. 2009 November; 151(3): 1207–1220. doi: 10.1104/pp.109.144030
PMCID:
PMC2773063
Abstract Full Text PDF–1.1M Supplementary Material
Three Sequenced Legume Genomes and Many Crop Species: Rich Opportunities for Translational Genomics
Steven B. Cannon, Gregory D. May, Scott A. Jackson
Plant Physiol. 2009 November; 151(3): 970–977. doi: 10.1104/pp.109.144659
PMCID:
PMC2773077
Full Text PDF–129K
Dynamic Rearrangements Determine Genome Organization and Useful Traits in Soybean
Kyung Do Kim, Jin Hee Shin, Kyujung Van, Dong Hyun Kim, Suk-Ha Lee
Plant Physiol. 2009 November; 151(3): 1066–1076. doi: 10.1104/pp.109.141739
PMCID:
PMC2773080
Abstract Full Text PDF–742K Supplementary Material
Legume Transcription Factor Genes: What Makes Legumes So Special?
Marc Libault, Trupti Joshi, Vagner A. Benedito, Dong Xu, Michael K. Udvardi, Gary Stacey
Plant Physiol. 2009 November; 151(3): 991–1001. doi: 10.1104/pp.109.144105
PMCID:
PMC2773095
Full Text PDF–963K Supplementary Material
Pigeonpea genomics initiative (PGI): an international effort to improve crop productivity of pigeonpea (Cajanus cajan L.)
R. K. Varshney, R. V. Penmetsa, S. Dutta, P. L. Kulwal, R. K. Saxena, S. Datta, T. R. Sharma, B. Rosen, N. Carrasquilla-Garcia, A. D. Farmer, A. Dubey, K. B. Saxena, J. Gao, B. Fakrudin, M. N. Singh, B. P. Singh, K. B. Wanjari, M. Yuan, R. K. Srivastava, A. Kilian, H. D. Upadhyaya, N. Mallikarjuna, C. D. Town, G. E. Bruening, G. He, G. D. May, R. McCombie, S. A. Jackson, N. K. Singh, D. R. Cook
Mol Breed. 2010 October; 26(3): 393–408. Published online 2009 September 17. doi: 10.1007/s11032-009-9327-2
PMCID:
PMC2948155
Abstract Full Text PDF–672K
New sources of soybean seed meal and oil composition traits identified through TILLING
Emily C Dierking, Kristin D Bilyeu
BMC Plant Biol. 2009; 9: 89. Published online 2009 July 14. doi: 10.1186/1471-2229-9-89
PMCID:
PMC2719642
Abstract Full Text PDF–321K
The lipoxygenase gene family: a genomic fossil of shared polyploidy between Glycine max and Medicago truncatula
Jin Hee Shin, Kyujung Van, Dong Hyun Kim, Kyung Do Kim, Young Eun Jang, Beom-Soon Choi, Moon Young Kim, Suk-Ha Lee
BMC Plant Biol. 2008; 8: 133. Published online 2008 December 23. doi: 10.1186/1471-2229-8-133
PMCID:
PMC2644698
Abstract Full Text PDF–826K Supplementary Material
Mutations in AtPS1 (Arabidopsis thaliana Parallel Spindle 1) Lead to the Production of Diploid Pollen Grains
Isabelle d'Erfurth, Sylvie Jolivet, Nicole Froger, Olivier Catrice, Maria Novatchkova, Mathieu Simon, Eric Jenczewski, Raphaël Mercier
PLoS Genet. 2008 November; 4(11): e1000274. Published online 2008 November 28. doi: 10.1371/journal.pgen.1000274
PMCID:
PMC2581889
Abstract Full Text PDF–571K
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