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Copyright © 2007, The Rockefeller University Press Article Molecular mechanisms of microtubule-dependent kinetochore transport toward spindle poles College of Life Sciences, University of Dundee, Wellcome Trust Biocentre, Dundee DD1 5EH, Scotland, UK Correspondence to Tomoyuki U. Tanaka: t.tanaka/at/lifesci.dundee.ac.uk Received February 20, 2007; Accepted June 15, 2007. This article has been cited by other articles in PMC.Abstract In mitosis, kinetochores are initially captured by the lateral sides of single microtubules and are subsequently transported toward spindle poles. Mechanisms for kinetochore transport are not yet known. We present two mechanisms involved in microtubule-dependent poleward kinetochore transport in Saccharomyces cerevisiae. First, kinetochores slide along the microtubule lateral surface, which is mainly and probably exclusively driven by Kar3, a kinesin-14 family member that localizes at kinetochores. Second, kinetochores are tethered at the microtubule distal ends and pulled poleward as microtubules shrink (end-on pulling). Kinetochore sliding is often converted to end-on pulling, enabling more processive transport, but the opposite conversion is rare. The establishment of end-on pulling is partly hindered by Kar3, and its progression requires the Dam1 complex. We suggest that the Dam1 complexes, which probably encircle a single microtubule, can convert microtubule depolymerization into the poleward kinetochore-pulling force. Thus, microtubule-dependent poleward kinetochore transport is ensured by at least two distinct mechanisms. Introduction The mitotic spindle is composed of microtubules emanating from spindle poles and has pivotal roles in high fidelity chromosome segregation during mitosis (McIntosh et al., 2002; Maiato et al., 2004; Kline-Smith et al., 2005). Kinetochores are initially captured by the lateral surface of spindle microtubules and are transported toward spindle poles during prometaphase (Rieder and Alexander, 1990; K. Tanaka et al., 2005). Subsequently, sister kinetochores are captured by microtubules extending from the opposite spindle poles (called sister kinetochore biorientation or amphitelic attachment) before anaphase onset (T.U. Tanaka et al., 2005). Poleward kinetochore transport during prometaphase is especially crucial when kinetochores are located at a distance from the mitotic spindle. In the budding yeast Saccharomyces cerevisiae, centromeres are tethered to spindle poles by microtubules during most of the cell cycle (Winey and O'Toole, 2001; T.U. Tanaka et al., 2005). Nonetheless, centromeres are released from and recaptured by microtubules during a brief period in S phase, probably as a result of kinetochore disassembly and reassembly upon centromere DNA replication (Pearson et al., 2004; Tanaka, 2005; our unpublished data). We have visualized this process in S phase using electron microscopy and live cell fluorescence microscopy (K. Tanaka et al., 2005). Moreover, to analyze individual kinetochore–microtubule interaction with higher resolution, we displaced a selected centromere (CEN3) from the spindle and other centromeres by conditionally inactivating it (K. Tanaka et al., 2005). Then, during metaphase arrest, we reactivated CEN3, which was subsequently captured by the lateral surface of single microtubules (centromere reactivation system; Fig. 1 A
Using this system, we found that Kar3, a kinesin-14 family member and microtubule minus end–directed motor, is involved in poleward kinetochore transport along the lateral surface of microtubules (kinetochore sliding; K. Tanaka et al., 2005). For instance, in the kar3-1 rigor mutant that can bind microtubules but does not have motor activity as a result of an ATP hydrolysis defect (Meluh and Rose, 1990; Maddox et al., 2003), CEN3 was captured by microtubules but frequently was not transported (K. Tanaka et al., 2005). In contrast, KAR3 overexpression accelerated CEN3 transport along microtubules (K. Tanaka et al., 2005). However, it has remained unclear whether Kar3 localizes at kinetochores and directly drives CEN3 sliding along microtubules. Moreover, although Kar3 is apparently involved in kinetochore sliding, CEN3 was still able to reach a spindle pole in the majority of kar3-deleted cells (K. Tanaka et al., 2005). This suggests the involvement of a redundant mechanism for kinetochore transport that still remains to be identified. The Dam1 complex, which is also called DASH or DDD and is composed of at least 10 proteins, has important roles in ensuring proper kinetochore–microtubule interaction (Cheeseman et al., 2001a; Janke et al., 2002; Li et al., 2002). However, in our CEN3 reactivation system, mutants of the Dam1 complex components did not show substantial defects in CEN3 capture by microtubules or in the subsequent sliding of CEN3 along microtubules (K. Tanaka et al., 2005). It has been recently reported that several Dam1 complexes could gather together and form rings encircling microtubules in vitro (Miranda et al., 2005; Westermann et al., 2005). It is still unclear whether this is the case in vivo or how the complex regulates kinetochore–microtubule interaction. Here, we studied mechanisms of kinetochore transport by microtubules using our centromere reactivation system (K. Tanaka et al., 2005) as well as in normal cell cycles (i.e., without cell cycle arrest or regulation of centromere activity). We show that poleward movement of kinetochores can occur in two distinct ways: lateral sliding, in which kinetochores move along the side of a microtubule, and end-on pulling, in which the kinetochore is attached to the end of a microtubule and is pulled poleward as the microtubule shrinks. Our study reveals how Kar3 and the Dam1 complex regulate these processes. Results Kar3 localizes at kinetochores during their transport along microtubules To visualize individual kinetochore–microtubule interactions at high resolution in S. cerevisiae, we regulated the activity of a particular centromere (CEN3). CEN3 is displaced from the spindle and other centromeres by conditional inactivation using transcription from the adjacently inserted GAL1-10 promoter (Fig. 1 A To address whether Kar3 localizes at kinetochores and directly drives their transport along microtubules, we visualized Kar3 by fusing it with four tandem copies of GFP (Kar3-4GFP). After the CEN3 reactivation, in most cells, Kar3-4GFP was visible at the CFP-labeled CEN3 before its capture by CFP-labeled microtubules and also during its transport along microtubules (Fig. 1 B Kinetochores attach to microtubule plus ends and are transported poleward as microtubules shrink in the absence of Kar3 Kar3 is involved in kinetochore transport toward spindle poles (K. Tanaka et al., 2005). However, in the majority of kar3Δ cells, CEN3 still reached spindle poles after being captured by microtubules (K. Tanaka et al., 2005), suggesting the involvement of a redundant mechanism for kinetochore transport. To identify this mechanism, we analyzed poleward kinetochore transport in kar3Δ cells in greater detail. In 68% of KAR3+ wild-type cells, CEN3 reached the spindle by sliding along the lateral surface of microtubules, whereas in kar3Δ cells, this occurred in only 11% of cells (Fig. 2 A
In KAR3+ cells, poleward sliding of CEN3 occurred with frequent pausing, and the associated microtubules showed frequent rescue (conversion from shrinkage to growth; Fig. 2 C Kar3 is the main and probably the sole factor driving kinetochore sliding along microtubules Having established that CEN3 is transported poleward either by sliding or end-on pulling, we were in a position to evaluate the contribution of Kar3 specifically to CEN3 sliding by excluding end-on pulling events from our analysis. To make an unbiased comparison between KAR3+ and kar3Δ cells, we studied CEN3 movement for a short period, during which CEN3 is associated with the microtubule lateral surface but not at the microtubule distal end after its initial capture by the microtubule lateral surface (supplemental note 6). During such a period, in KAR3+ cells, CEN3 travelled preferentially poleward (Fig. 3 A
Given a lack of preferential direction to CEN3 motion in kar3Δ cells, we suspected that CEN3 motility in this mutant might be caused by one-dimensional diffusion along a microtubule. To address this, we plotted the mean squared displacement (MSD) of CEN3 along a microtubule against a change of time (Δt) in kar3Δ cells (Fig. 3 B Kar3 partially hinders kinetochores from being tethered at the microtubule plus ends In most cells that we observed, CEN3 was first captured by a microtubule lateral surface, but, when the microtubule subsequently shrank, its distal end encountered CEN3 (note that the microtubule shrinkage rate exceeds the mean velocity of CEN3 sliding; Fig. 4 A
When microtubule plus ends reach CEN3 after microtubule shrinkage, how do cells choose between these two options? We addressed whether Kar3 affects this choice because end-on pulling was more frequently observed when Kar3 was not functional (Fig. 2 A How does Kar3 partially suppress the establishment of the microtubule end-on pulling of CEN3? We speculated that Kar3 might anchor CEN3 to the microtubule lateral surface (close to microtubule plus ends) and that this might hinder CEN3 from forming a specific attachment required for end-on pulling. To test this idea, we used the kar3-1 mutant, which can bind microtubule lateral surfaces but cannot work as a motor because of an ATP hydrolysis defect (Meluh and Rose, 1990; Maddox et al., 2003; K. Tanaka et al., 2005). In contrast to kar3Δ cells, kar3-1 mutant cells showed a strong reduction in the frequency of establishing end-on pulling (Fig. 4 B Characterizing microtubule depolymerization during end-on pulling We next addressed which microtubule end underwent depolymerization during the microtubule end-on pulling of CEN3. We marked a microtubule region midway between CEN3 (bound at the microtubule plus end) and a spindle pole by photobleaching the YFP-Tub1 signal (Fig. 5 A
Subsequently, we compared the microtubule depolymerization (shrinkage) rate in the presence of CEN3 associated with the microtubule end (i.e., during end-on pulling) and in the absence of CEN3 association with microtubules (supplemental note 12). The shrinkage rate was significantly slower during the end-on pulling (Fig. 5 B In addition, because Kar3 and Kip3 (a kinesin-8 family member) facilitate microtubule depolymerization in vitro (Endow et al., 1994; Chu et al., 2005; Sproul et al., 2005; Gupta et al., 2006; Varga et al., 2006) and foster microtubule disassembly in vivo (Huyett et al., 1998; Hildebrandt and Hoyt, 2000; Severin et al., 2001; West et al., 2001), we addressed whether these motor proteins affect the microtubule shrinkage rate (Fig. S3 A, available at http://www.jcb.org/cgi/content/full/jcb.200702141/DC1). Deletions of kar3 or kip3 and the kar3 kip3 double mutant did not significantly change the microtubule shrinkage rate either when CEN3 was transported by microtubule end-on pulling or in the absence of CEN3 association. Nonetheless, the mean length of nuclear microtubules was longer in kar3Δ and kip3Δ cells than in wild-type cells (unpublished data) as a result of a reduced frequency of microtubule catastrophe (conversion from growth to shrinkage) in these cells (unpublished data). The Dam1 complexes along a microtubule are collected at the microtubule plus end as the microtubule depolymerizes We next studied what factors facilitate the microtubule end-on pulling of kinetochores. The Dam1 complex was a candidate for the following reasons: (1) the Dam1 complex is not required for kinetochore sliding (K. Tanaka et al., 2005) but, nonetheless, becomes associated with kinetochores before sister kinetochores biorient in metaphase (Cheeseman et al., 2001a; Janke et al., 2002; Li et al., 2002); (2) the complex forms a ring encircling microtubules in vitro (Miranda et al., 2005; Westermann et al., 2005) and, if this is the case in vivo, it could tether kinetochores at microtubule plus ends while the complex is pushed poleward as microtubule protofilaments splay out during microtubule shrinkage (Fig. 6 A
To gain more clues as to the function of the Dam1 complex, we visualized the complex along microtubules by tagging both Dam1 and Ask1, two components of the complex, with four tandem copies of GFP. The Dam1 complex showed multiple punctate GFP signals along microtubules. Intriguingly, the intensity of the GFP signals at the distal ends of microtubules increased during microtubule shrinkage (Fig. 6 B
The Dam1 complex facilitates the microtubule end-on pulling of kinetochores We subsequently investigated the roles of the Dam1 complex in kinetochore transport by impairing the function of the complex. If the Dam1 complex facilitates the microtubule end-on pulling of kinetochores, then this, the main kinetochore transport mode in kar3Δ cells, would be defective when the Dam1 complex is impaired. To test this, we attempted to combine kar3Δ with temperature-sensitive mutants of the Dam1 complex components dam1-1, ask1-3, and spc34-3. However, all of these combinations were lethal even at a permissive temperature for each temperature-sensitive mutant. Therefore, we used the kar3-64 temperature-sensitive mutant instead of kar3Δ (supplemental note 14). Only the dam1-1 kar3-64 double mutant was viable, whereas the other two combinations were lethal. We analyzed CEN3 transport in dam1-1 and kar3-64 single mutants and in the dam1-1 kar3-64 double mutant at 35°C, which is a restrictive temperature for these mutant alleles. In the kar3-64 single mutant, CEN3 was transported toward spindle poles by microtubule end-on pulling in the majority (74%) of cells (Fig. 8 A
How could the Dam1 complex facilitate the microtubule end-on pulling of kinetochores? Given that the Dam1 complexes are able to form ring structures, it is likely that during microtubule depolymerization, the Dam1 complex has a key role in converting the splaying out of depolymerizing microtubule protofilaments into the kinetochore pulling force toward a spindle pole (see Fig. 10
Kar3 and the Dam1 complex facilitate kinetochore transport by microtubules in normal S phase To analyze microtubule-dependent kinetochore transport at high resolution, we have so far studied this process using centromere reactivation in metaphase-arrested cells (Fig. 1 A Recently, we have been able to visualize the transient detachment of GFP-marked centromeres from microtubules in early S phase (supplemental note 17; our unpublished data). This detachment continued for 0.5–1.5 min, during which centromeres typically moved up to 1.4 ± 0.6 μm (mean ± SD) from a spindle pole. After detachment, centromeres were recaptured by microtubules and swiftly (in 0.5–1.0 min) returned to the vicinity of a spindle pole (<0.6 μm from the spindle pole; our unpublished data). These results prompted us to compare the behavior of centromeres, which detached from microtubules in early S phase in wild-type, dam1-1, and kar3-64 single mutant and dam1-1 kar3-64 double mutant cells. We labeled CEN5, CEN15, and microtubules by CFP, GFP, and YFP, respectively. Before cells started budding (i.e., before entry into S phase), both CENs localized close to a spindle pole in wild-type and kar3-64 cells but often somewhat more distant (>1.0 μm) from a pole while still attached to microtubules in dam1- 1 and dam1-1 kar3-64 cells. Nonetheless, in all four kinds of cells, both CENs equally showed detachment from microtubules when cells started budding (i.e., during S phase; supplemental note 17) and were recaptured by microtubules extending from a spindle pole after a similar time interval (0.5–1.5 min). In both wild-type and kar3-64, after CENs were recaptured by microtubules, most centromeres promptly (in 0.5–1.0 min) moved to the vicinity of a spindle pole (Fig. 9 A
Thus, in dam1-1 and kar3-64 single and dam1-1 kar3-64 double mutant cells, we found distinct defects in the microtubule-dependent transport of CENs during normal S phase, which are consistent with our results from the centromere reactivation system. Our data suggest that Kar3 and the Dam1 complex have important roles in the microtubule-dependent poleward transport of authentic centromeres during the normal cell cycle (supplemental notes 20 and 21; Fig. S4 C). Discussion We have investigated the mechanisms by which kinetochores are transported toward spindle poles by microtubules in budding yeast. We show that poleward movement can occur in two distinct ways: lateral sliding, in which kinetochores move along the side of a microtubule, and end-on pulling, in which the kinetochore is attached to the end of a microtubule and is pulled poleward as the microtubule shrinks. Kar3 is essential to drive poleward lateral sliding, whereas the Dam1 complex is crucial for end-on pulling (Fig. 10 It is thought that upon centromere DNA replication in budding yeast, kinetochores are disassembled, causing the release of centromeres from microtubules for a short period (Pearson et al., 2004; Tanaka, 2005; our unpublished data). Soon afterward, kinetochores are reassembled and captured by the lateral sides of microtubules extending from spindle poles (K. Tanaka et al., 2005). Microtubule lateral surfaces can secure initial kinetochore capture by providing a much larger contact surface compared with microtubule tips. The amount of Kar3 loaded at kinetochores probably increases while kinetochores are detached from microtubules (supplemental note 1; Tytell and Sorger, 2006). Kar3 (and the Dam1 complex) is not required for the initial kinetochore capture by microtubules (supplemental note 22; K. Tanaka et al., 2005), but, once kinetochores are captured, the motor activity of Kar3 drives kinetochore sliding along microtubule lateral surfaces toward spindle poles. Kar3 is the main and probably the sole factor driving this kinetochore sliding because in the absence of Kar3, kinetochores only show one-dimensional diffusion along microtubules. Kinetochore sliding, which is promoted by Kar3, occurs toward a spindle pole with frequent pausing. This is perhaps because the Kar3 molecules loaded on kinetochores do not persistently drive their sliding along microtubules. This is a similar situation to that of Ncd, a putative Kar3 orthologue in Drosophila melanogaster shown to be a nonprocessive motor, whose domain is released from microtubules after each ATPase cycle and must bind microtubules repeatedly to drive motion (Endow, 2003). Probably because of this frequent pausing, the mean velocity of kinetochore sliding is lower than that of microtubule shrinkage (K. Tanaka et al., 2005). Therefore, microtubule plus ends often reach kinetochores unless microtubules are rescued and regrow before this happens, a process involving Stu2 transport from kinetochores (K. Tanaka et al., 2005). If microtubule plus ends reach kinetochores, cells must choose one of the following two options: (1) microtubules show regrowth (i.e., are rescued), probably facilitated by Stu2 and other factors loaded at kinetochores (K. Tanaka et al., 2005), or (2) kinetochores are tethered at microtubule plus ends, probably as a result of association with the Dam1 complex ring structure, which has been pulled poleward as microtubules shrink. Kar3 reduces the frequency of the second choice (i.e., establishment of microtubule end-on pulling), probably by anchoring kinetochores to the microtubule lateral surface. In addition, the establishment of microtubule end-on pulling seems to be partly affected by stochastic elements (supplemental note 9). In any case, in the first option, kinetochores still remain associated with the lateral surface of microtubules and continue to slide poleward along microtubules. In the second, kinetochores at microtubule ends are continuously pulled poleward (end-on pulling) as the attached microtubules shrink without pausing or rescue. It is currently unclear how microtubule rescue is suppressed during end-on pulling, but it is not solely caused by a lack of Stu2 loaded on kinetochores (supplemental note 4). The microtubule end-on pulling of kinetochores is facilitated by the Dam1 complex. In vitro experiments suggested that several Dam1 complexes could gather together and form a ring structure encircling a microtubule, which could move along the microtubule (Miranda et al., 2005; Westermann et al., 2005, 2006; Asbury et al., 2006). We found that the Dam1 complexes along a microtubule were collected at the plus ends of depolymerizing microtubules in vivo (supplemental note 23). The simplest interpretation would be that the Dam1 complexes indeed form a ring encircling a microtubule in vivo, which is pushed poleward by splaying protofilaments as the microtubule depolymerizes. However, it cannot be completely ruled out that the Dam1 complexes do not form a ring in vivo (McIntosh, 2005) and that unknown mechanisms collect the complexes along a microtubule at its plus end during microtubule shrinkage. In any case, when Dam1 function was impaired, the microtubule end-on pulling of kinetochores became defective. Our in vivo data support the model (Fig. 10 Kinetochore sliding and microtubule end-on pulling are two distinct modes of microtubule-dependent kinetochore transport and seem to use different energy sources to produce the force necessary for kinetochore transport. When microtubules polymerize, the curvature of GDP-bound tubulin dimers is constrained by microtubule geometry so that the polymer lattice stores energy from GTP hydrolysis (Howard and Hyman, 2003). During end-on pulling, the free energy is released and converted to kinetochore pulling force by a power-stroke mechanism as microtubule protofilaments change from a straight to curved form (Grishchuk et al., 2005). The Dam1 complex apparently has an important role in this conversion (Fig. 10 Given these disadvantages, why do cells still use kinetochore sliding for their transport? Kinetochore sliding may have the following merits compared with end-on pulling: (1) for the establishment of microtubule end-on pulling, kinetochores must wait until the associated microtubule shrinks and the microtubule plus end finally reaches the kinetochore. Therefore, depending on the situation, kinetochores may reach a spindle pole earlier by sliding than by end-on pulling. (2) A single microtubule plus end is probably able to attach to only a single kinetochore during end-on pulling (Winey and O'Toole, 2001), but, in contrast, multiple kinetochores could be transported simultaneously by sliding (supplemental note 24). (3) Microtubule rescue, which happens during kinetochore sliding but not during end-on pulling, would increase the chance that kinetochores further afield are also captured by the same microtubule (supplemental note 25). Because kinetochore sliding is converted into end-on pulling but not vice versa, the population of kinetochores attached to microtubule plus ends increases during poleward kinetochore transport. Both sister kinetochores subsequently interact with microtubules, and the Ipl1 kinase promotes the reorientation of kinetochore–microtubule attachment (T.U. Tanaka et al., 2002, 2005), in which the Dam1 complex is a crucial substrate of the kinase (Cheeseman et al., 2002). Because this reorientation happens in a tension-dependent manner (Nicklas, 1997; Dewar et al., 2004), sister kinetochores eventually attach to microtubules from opposite spindle poles (biorientation). To establish biorientation efficiently, kinetochores must be located within the spindle where microtubules extend from both spindle poles at high density. Because microtubule-dependent transport brings kinetochores close to the spindle, this process should facilitate efficient sister kinetochore biorientation. The stable maintenance of biorientation crucially requires Dam1 complex function (Janke et al., 2002). Presumably, in metaphase, the Dam1 complex is necessary to pull sister kinetochores toward opposite spindle poles, generating tension across sister kinetochores and, in turn, stabilizing kinetochore–microtubule attachment (Dewar et al., 2004), thus simultaneously avoiding breakage of the attachment when this tension is applied (supplemental note 26). Metaphase is followed by anaphase A (Pearson et al., 2001), in which the kinetochore–spindle pole distance is shortened. We envisage that the Dam1 complex also plays the same role in anaphase A, as we found in prometaphase (i.e., tethering kinetochores at the microtubule plus ends and converting microtubule depolymerization [occurring at kinetochore sides; Maddox et al., 2000] into kinetochore pulling force). Consistent with this notion, we found that the Dam1 complex colocalizes with kinetochores during anaphase A (supplemental note 27; unpublished data). Recently, the Dam1 complex orthologue was identified in fission yeast (Liu et al., 2005; Sanchez-Perez et al., 2005). In this organism, the Dam1 complex has important roles in sister kinetochore biorientation and kinetochore congression to the spindle midzone, which is consistent with Dam1 complex function in budding yeast. Moreover, kinetochores are still transported poleward in the absence of all of the known microtubule minus end–directed motors (i.e., two kinesin-14s and dynein) in fission yeast (Grishchuk and McIntosh, 2006); thus, perhaps kinetochores are transported by end-on pulling in this organism, as we have shown directly here in budding yeast. In vertebrate cells, kinetochores are also captured by the lateral sides of single microtubules and are transported toward spindle poles in prometaphase (Rieder and Alexander, 1990). How is the kinetochore transport regulated in vertebrate cells? In contrast to mechanisms in budding yeast (supplemental note 8), vertebrate dynein could be involved in fast and processive kinetochore sliding along microtubules (supplemental note 28; Rieder and Alexander, 1990; King et al., 2000). If this is the case, the depletion of dynein may reveal the microtubule end-on pulling of kinetochores as a possible redundant mechanism for kinetochore transport in vertebrate cells, just as it was revealed by kar3Δ in yeast. Although convincing orthologues of the Dam1 complex components have not yet been identified in vertebrate cells (Meraldi et al., 2006), functional counterparts of the Dam1 complex may have an important role in microtubule end-on pulling. Kinesin-13s (mitotic centromere-associated kinesin, etc.) may be such functional counterparts because they also form rings encircling single microtubules in vitro (Moores et al., 2006; Tan et al., 2006), localize at kinetochores in mitosis (Wordeman, 2005), and act as important substrates of the aurora B kinase in ensuring proper kinetochore–microtubule attachment (Andrews et al., 2004; Lan et al., 2004; Ohi et al., 2004; Sampath et al., 2004). Kinetochore capture and transport by spindle microtubules is the first crucial step for proper chromosome segregation in all eukaryotic cells. Comparison of kinetochore transport between different organisms will uncover the evolution of regulatory mechanisms for this fundamental cellular process. Materials and methods Yeast genetics and molecular biology The background of yeast strains (W303), methods for yeast culture, and the centromere reactivation system were described previously (Dewar et al., 2004; Amberg et al., 2005; K. Tanaka et al., 2005). All tagging of yeast genes were performed at their C termini at their original gene loci except for the tagging of TUB1. CFP-TUB1 and YFP-TUB1 constructs were integrated at an auxotroph marker locus. Mutant alleles of spc34-3 (Janke et al., 2002), ask1-3 (Li et al., 2002), dam1-1 (Cheeseman et al., 2001b), and kar3-64 (Cottingham et al., 1999) were reported previously. Cells were cultured at 25°C in YP medium containing glucose unless otherwise stated. For more information, see supplemental note 29. Microscopy The procedures for time-lapse fluorescence microscopy were described previously (Dewar et al., 2004; K. Tanaka et al., 2005). Time-lapse images were collected every 15 s for 30 min at 23°C (ambient temperature) unless otherwise stated. For image acquisition, we used a microscope (DeltaVision RT; Applied Precision), a UPlanSApo 100× NA 1.40 objective lens (Olympus), a CCD camera (CoolSnap HQ; Photometrics), and SoftWoRx software (Applied Precision). We acquired three to seven (0.7 μm apart) z sections, which were subsequently deconvoluted, projected to two-dimensional images, and analyzed with SoftWoRx and Volocity (Improvision) software. CFP signals were discriminated from either YFP or GFP signals using the JP4 filter set (Chroma Technology Corp.). YFP signals were discriminated from CFP and GFP signals using the JP3 filter set (Chroma Technology Corp.). To collect GFP and YFP signals together without distinguishing the two, the YFP channel of the JP4 filter set was used. Analyzing the dynamics of kinetochores and microtubules To evaluate the length of microtubules and position of centromeres, we took account of the distance along the z axis as well as the distance on a projected image. To score modes of kinetochore transport in the CEN3 reactivation system (Figs. 2 A Online supplemental material Supplemental notes 1–32 describe more results, discussions, and methods. Fig. S1 A shows kinetochore transport in cells in which microtubule plus ends are labeled, and B shows Stu2 localization at CEN3 during microtubule end-on pulling. Fig. S2 A shows the localization of motor proteins Cin8, Kip1, Kip2, Kip3, and Dyn1, B shows kinetochore transport in kar3 dyn1 and kar3 kip3 double mutants, and C shows Kar3 localization during microtubule end-on pulling. Fig. S3 A shows that Kar3 and Kip3 do not significantly affect the microtubule shrinkage rate, and B shows defects in kinetochore capture and transport in dam1, ask1, and spc34 mutants. Fig. S4 A shows that kinetochores sometimes detach from microtubules in dam1-1-td, B shows CEN transport velocity in normal S phase, and C shows Kar3 localization at kinetochores in normal S phase. Video 1 shows a kar3Δ cell showing the microtubule end-on pulling of CEN3 (video of the cell shown in Fig. 2 B). Video 2 shows the conversion of CEN3 sliding along a microtubule into microtubule end-on pulling (video of the cell shown in Fig. 2 E). Video 3 shows the Dam1 complexes accumulate at a microtubule plus end as it depolymerizes (video of the cell shown in Fig. 6 B). Video 4 shows that the Dam1 complexes continuously colocalize with CEN3 during microtubule end-on pulling (video of the cell shown in Fig. 7 A). Video 5 shows that the Dam1 complexes do not continuously colocalize with CEN3 during sliding along a microtubule (video of the cell shown in Fig. 7 B). Video 6 presents a dam1-1 kar3-64 cell showing the standstill of CEN3 attached at the plus end of a microtubule (video of the cell shown in Fig. 8 B). Online supplemental material is available at http://www.jcb.org/cgi/content/full/jcb.200702141/DC1. [Supplemental Material Index]
Acknowledgments We thank J.J. Blow, L. Clayton, J. Howard, M.J.R. Stark, J.R. Swedlow, and members of the Tanaka laboratory for discussions and reading the manuscript and thank C. Allan and S. Swift for technical help for microscopy/computing. We also thank R. Ciosk, F. Uhlmann, K. Nasmyth, M.A. Hoyt, E. Schiebel, I.M. Cheeseman, G. Barnes, R. Tsien, S.J. Elledge, K. Bloom, J.E. Haber, M.D. Rose, M. Yanagida, A.W. Murray, A.F. Straight, T.N. Davis, EUROSCARF, and the Yeast Resource Centre for reagents. This work was supported by Cancer Research UK, Wellcome Trust, the Human Frontier Science Program, the Lister Research Institute Prize, and the Association for International Cancer Research. T.U. Tanaka is a Senior Research Fellow of Cancer Research UK. Notes K. Tanaka's present address is Institute of Development, Aging, and Cancer, Tohoku University, Sendai 980-8575, Japan. Abbreviation used in this paper: MSD, mean squared displacement. References
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