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The Biological Big Bang model for the major transitions in evolution
Eugene V Koonin
Biol Direct. 2007; 2: 21. Published online 2007 August 20. doi: 10.1186/1745-6150-2-21
PMCID:
PMC1973067
Abstract Full Text PDF–467K
 Is Cited by the Following 18 Articles in this Archive:
Early evolution without a tree of life
William F Martin
Biol Direct. 2011; 6: 36. Published online 2011 June 30. doi: 10.1186/1745-6150-6-36
PMCID:
PMC3158116
Abstract Full Text PDF–2.2M
Homoplastic microinversions and the avian tree of life
Edward L Braun, Rebecca T Kimball, Kin-Lan Han, Naomi R Iuhasz-Velez, Amber J Bonilla, Jena L Chojnowski, Jordan V Smith, Rauri CK Bowie, Michael J Braun, Shannon J Hackett, John Harshman, Christopher J Huddleston, Ben D Marks, Kathleen J Miglia, William S Moore, Sushma Reddy, Frederick H Sheldon, Christopher C Witt, Tamaki Yuri
BMC Evol Biol. 2011; 11: 141. Published online 2011 May 25. doi: 10.1186/1471-2148-11-141
PMCID:
PMC3123225
Abstract Full Text PDF–1.2M Supplementary Material
The Roots of Bioinformatics in Theoretical Biology
Paulien Hogeweg
PLoS Comput Biol. 2011 March; 7(3): e1002021. Published online 2011 March 31. doi: 10.1371/journal.pcbi.1002021
PMCID:
PMC3068925
Abstract Full Text PDF–91K
Save the tree of life or get lost in the woods
Ruben E Valas, Philip E Bourne
Biol Direct. 2010; 5: 44. Published online 2010 July 1. doi: 10.1186/1745-6150-5-44
PMCID:
PMC2910001
Abstract Full Text PDF–1000K Supplementary Material
The origin and early evolution of eukaryotes in the light of phylogenomics
Eugene V Koonin
Genome Biol. 2010; 11(5): 209. Published online 2010 May 5. doi: 10.1186/gb-2010-11-5-209
PMCID:
PMC2898073
Abstract Full Text PDF–814K
Phylogenetic detection of numerous gene duplications shared by animals, fungi and plants
Xiaofan Zhou, Zhenguo Lin, Hong Ma
Genome Biol. 2010; 11(4): R38. Published online 2010 April 6. doi: 10.1186/gb-2010-11-4-r38
PMCID:
PMC2884541
Abstract Full Text PDF–1.0M Supplementary Material
The Universal Plausibility Metric (UPM) & Principle (UPP)
David L Abel
Theor Biol Med Model. 2009; 6: 27. Published online 2009 December 3. doi: 10.1186/1742-4682-6-27
PMCID:
PMC2796651
Abstract Full Text PDF–281K
Network dynamics of eukaryotic LTR retroelements beyond phylogenetic trees
Carlos Llorens, Alfonso Muñoz-Pomer, Lucia Bernad, Hector Botella, Andrés Moya
Biol Direct. 2009; 4: 41. Published online 2009 November 2. doi: 10.1186/1745-6150-4-41
PMCID:
PMC2774666
Abstract Full Text PDF–2.7M Supplementary Material
Search for a 'Tree of Life' in the thicket of the phylogenetic forest
Pere Puigbò, Yuri I Wolf, Eugene V Koonin
J Biol. 2009; 8(6): 59. Published online 2009 July 13. doi: 10.1186/jbiol159
PMCID:
PMC2737373
Abstract Full Text PDF–3.3M Supplementary Material
Molecular Data are Transforming Hypotheses on the Origin and Diversification of Eukaryotes
Yonas I. Tekle, Laura Wegener Parfrey, Laura A. Katz
Bioscience. Author manuscript; available in PMC 2010 September 13.
Published in final edited form as: Bioscience. 2009 June; 59(6): 471–481. doi: 10.1525/bio.2009.59.6.5
PMCID:
PMC2938078
Abstract Full Text PDF–639K
Analysis of Rare Genomic Changes Does Not Support the Unikont–Bikont Phylogeny and Suggests Cyanobacterial Symbiosis as the Point of Primary Radiation of Eukaryotes
Igor B. Rogozin, Malay Kumar Basu, Miklós Csürös, Eugene V. Koonin
Genome Biol Evol. 2009; 1: 99–113. Published online 2009 May 25. doi: 10.1093/gbe/evp011
PMCID:
PMC2817406
Abstract Full Text PDF–674K Supplementary Material
Evolution based on domain combinations: the case of glutaredoxins
Rui Alves, Ester Vilaprinyo, Albert Sorribas, Enrique Herrero
BMC Evol Biol. 2009; 9: 66. Published online 2009 March 25. doi: 10.1186/1471-2148-9-66
PMCID:
PMC2679010
Abstract Full Text PDF–1.1M Supplementary Material
Darwinian evolution in the light of genomics
Eugene V. Koonin
Nucleic Acids Res. 2009 March; 37(4): 1011–1034. Published online 2009 March. doi: 10.1093/nar/gkp089
PMCID:
PMC2651812
Abstract Full Text PDF–3.8M
Genomics of bacteria and archaea: the emerging dynamic view of the prokaryotic world
Eugene V. Koonin, Yuri I. Wolf
Nucleic Acids Res. 2008 December; 36(21): 6688–6719. Published online 2008 December. doi: 10.1093/nar/gkn668
PMCID:
PMC2588523
Abstract Full Text PDF–2.6M
The Last Universal Common Ancestor: emergence, constitution and genetic legacy of an elusive forerunner
Nicolas Glansdorff, Ying Xu, Bernard Labedan
Biol Direct. 2008; 3: 29. Published online 2008 July 9. doi: 10.1186/1745-6150-3-29
PMCID:
PMC2478661
Abstract Full Text PDF–738K
The Deep Archaeal Roots of Eukaryotes
Natalya Yutin, Kira S. Makarova, Sergey L. Mekhedov, Yuri I. Wolf, Eugene V. Koonin
Mol Biol Evol. 2008 August; 25(8): 1619–1630. Published online 2008 May 6. doi: 10.1093/molbev/msn108
PMCID:
PMC2464739
Abstract Full Text PDF–656K Supplementary Material
Evolutionary Patterns in the Sequence and Structure of Transfer RNA: Early Origins of Archaea and Viruses
Feng-Jie Sun, Gustavo Caetano-Anollés
PLoS Comput Biol. 2008 March; 4(3): e1000018. Published online 2008 March 7. doi: 10.1371/journal.pcbi.1000018
PMCID:
PMC2265525
Abstract Full Text PDF–239K Supplementary Material
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