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HIV-1 TAR element is processed by Dicer to yield a viral micro-RNA involved in chromatin remodeling of the viral LTR
Zachary Klase, Prachee Kale, Rafael Winograd, Madhur V Gupta, Mohammad Heydarian, Reem Berro, Timothy McCaffrey, Fatah Kashanchi
BMC Mol Biol. 2007; 8: 63. Published online 2007 July 30. doi: 10.1186/1471-2199-8-63
PMCID:
PMC1955452
Abstract Full Text PDF–949K

Is Cited by the Following 47 Articles in this Archive:

Tailored enrichment strategy detects low abundant small noncoding RNAs in HIV-1 infected cells
Claudia F Althaus, Valentina Vongrad, Barbara Niederöst, Beda Joos, Francesca Di Giallonardo, Philip Rieder, Jovan Pavlovic, Alexandra Trkola, Huldrych F Günthard, Karin J Metzner, Marek Fischer
Retrovirology. 2012; 9: 27. Published online 2012 March 29. doi: 10.1186/1742-4690-9-27
PMCID:
PMC3341194
Abstract Full Text PDF–1.4M Supplementary Material
Argonaute and the Nuclear RNAs: New Pathways for RNA-Mediated Control of Gene Expression
Keith T. Gagnon, David R. Corey
Nucleic Acid Ther. 2012 February; 22(1): 3–16. doi: 10.1089/nat.2011.0330
PMCID:
PMC3318256
Free in PMC on 2013/02/01
Replication competent HIV-1 viruses that express intragenomic microRNA reveal discrete RNA-interference mechanisms that affect viral replication
Zachary Klase, Laurent Houzet, Kuan-Teh Jeang
Cell Biosci. 2011; 1: 38. Published online 2011 November 23. doi: 10.1186/2045-3701-1-38
PMCID:
PMC3256098
Abstract Full Text PDF–807K Supplementary Material
West Nile virus encodes a microRNA-like small RNA in the 3′ untranslated region which up-regulates GATA4 mRNA and facilitates virus replication in mosquito cells
Mazhar Hussain, Shessy Torres, Esther Schnettler, Anneke Funk, Adam Grundhoff, Gorben P. Pijlman, Alexander A. Khromykh, Sassan Asgari
Nucleic Acids Res. 2012 March; 40(5): 2210–2223. Published online 2011 November 12. doi: 10.1093/nar/gkr848
PMCID:
PMC3300009
Abstract Full Text PDF–1.3M
Deep sequencing of small TAR-derived RNAs in HIV-1 producing cells
Alex Harwig, Ben Berkhout, Atze T Das
Retrovirology. 2011; 8(Suppl 2): P31. Published online 2011 October 3. doi: 10.1186/1742-4690-8-S2-P31
PMCID:
PMC3236919
Full Text PDF–174K
HIV-1 Tat Protein Promotes Neuronal Dysfunction through Disruption of MicroRNAs
J. Robert Chang, Ruma Mukerjee, Asen Bagashev, Luis Del Valle, Tinatin Chabrashvili, Brian J. Hawkins, Johnny J. He, Bassel E. Sawaya
J Biol Chem. 2011 November 25; 286(47): 41125–41134. Published online 2011 September 28. doi: 10.1074/jbc.M111.268466
PMCID:
PMC3220514
Free in PMC on 2012/11/25
Deep sequencing of virus-infected cells reveals HIV-encoded small RNAs
Nick C.T. Schopman, Marcel Willemsen, Ying Poi Liu, Ted Bradley, Antoine van Kampen, Frank Baas, Ben Berkhout, Joost Haasnoot
Nucleic Acids Res. 2012 January; 40(1): 414–427. Published online 2011 September 10. doi: 10.1093/nar/gkr719
PMCID:
PMC3245934
Abstract Full Text PDF–4.6M
Enhancement of Replication of RNA Viruses by ADAR1 via RNA Editing and Inhibition of RNA-Activated Protein Kinase
Jean-François Gélinas, Guerline Clerzius, Eileen Shaw, Anne Gatignol
J Virol. 2011 September; 85(17): 8460–8466. doi: 10.1128/JVI.00240-11
PMCID:
PMC3165853
Abstract Full Text PDF–481K
MicroRNAs and their potential involvement in HIV infection
Guihua Sun, John J. Rossi
Trends Pharmacol Sci. Author manuscript; available in PMC 2012 November 1.
Published in final edited form as: Trends Pharmacol Sci. 2011 November; 32(11): 675–681. Published online 2011 August 19. doi: 10.1016/j.tips.2011.07.003
PMCID:
PMC3200488
Free in PMC on 2012/11/01
MicroRNAs and human retroviruses
Laurent Houzet, Kuan-Teh Jeang
Biochim Biophys Acta. Author manuscript; available in PMC 2012 November 1.
Published in final edited form as: Biochim Biophys Acta. 2011 Nov-Dec; 1809(11-12): 686–693. Published online 2011 May 24. doi: 10.1016/j.bbagrm.2011.05.009
PMCID:
PMC3177989
Free in PMC on 2012/11/01
Tat RNA silencing suppressor activity contributes to perturbation of lymphocyte miRNA by HIV-1
Amy M Hayes, Shuiming Qian, Lianbo Yu, Kathleen Boris-Lawrie
Retrovirology. 2011; 8: 36. Published online 2011 May 13. doi: 10.1186/1742-4690-8-36
PMCID:
PMC3120759
Abstract Full Text PDF–1.3M
Eradication Therapies for HIV Infection: Time to Begin Again
David M. Margolis
AIDS Res Hum Retroviruses. 2011 April; 27(4): 347–353. doi: 10.1089/aid.2011.0017
PMCID:
PMC3065332
Abstract Full Text PDF–150K
Noncoding RNPs of Viral Origin
Joan Steitz, Sumit Borah, Demian Cazalla, Victor Fok, Robin Lytle, Rachel Mitton-Fry, Kasandra Riley, Tasleem Samji
Cold Spring Harb Perspect Biol. 2011 March; 3(3): a005165. doi: 10.1101/cshperspect.a005165
PMCID:
PMC3039937
Free in PMC on 2013/03/01
Mini ways to stop a virus: microRNAs and HIV-1 replication
Karen Chiang, Andrew P Rice
Future Virol. Author manuscript; available in PMC 2011 December 1.
Published in final edited form as: Future Virol. 2011 February; 6(2): 209–221. doi: 10.2217/fvl.10.92
PMCID:
PMC3118648
Abstract Full Text PDF–110K
Absence of DICER in Monocytes and Its Regulation by HIV-1
William Coley, Rachel Van Duyne, Lawrence Carpio, Irene Guendel, Kylene Kehn-Hall, Sebastien Chevalier, Aarthi Narayanan, Truong Luu, Norman Lee, Zachary Klase, Fatah Kashanchi
J Biol Chem. 2010 October 15; 285(42): 31930–31943. Published online 2010 June 28. doi: 10.1074/jbc.M110.101709
PMCID:
PMC2952194
Abstract Full Text
microRNA machinery is an integral component of drug-induced transcription inhibition in HIV-1 infection
Lawrence Carpio, Zachary Klase, William Coley, Irene Guendel, Sarah Choi, Rachel Van Duyne, Aarthi Narayanan, Kylene Kehn-Hall, Laurent Meijer, Fatah Kashanchi
J RNAi Gene Silencing. 2010 May; 6(1): 386–400. Published online 2010 May 29.
Correction in:
J RNAi Gene Silencing. 2010 May; 6(1): E386.
PMCID:
PMC2902143
Abstract Full Text PDF–781K Correction
MicroRNAs are expressed and processed by human primary macrophages
Aimée J. Luers, Olivier D. Loudig, Joan W. Berman
Cell Immunol. Author manuscript; available in PMC 2011 March 27.
Published in final edited form as: Cell Immunol. 2010; 263(1): 1–8. Published online 2010 March 27. doi: 10.1016/j.cellimm.2010.03.011
PMCID:
PMC2906247
Abstract Full Text PDF–6.4M Supplementary Material
Epigenetic Regulation of Kaposi's Sarcoma-Associated Herpesvirus Latency by Virus-Encoded MicroRNAs That Target Rta and the Cellular Rbl2-DNMT Pathway
Fang Lu, William Stedman, Malik Yousef, Rolf Renne, Paul M. Lieberman
J Virol. 2010 March; 84(6): 2697–2706. Published online 2010 January 13. doi: 10.1128/JVI.01997-09
PMCID:
PMC2826065
Abstract Full Text PDF–1.2M
MicroRNAs and non-coding RNAs in virus-infected cells
Dominique L. Ouellet, Patrick Provost
Methods Mol Biol. Author manuscript; available in PMC 2010 July 19.
Published in final edited form as: Methods Mol Biol. 2010; 623: 35–65. doi: 10.1007/978-1-60761-588-0_3
PMCID:
PMC2906133
Abstract Full Text PDF–669K
Molecular control of HIV-1 postintegration latency: implications for the development of new therapeutic strategies
Laurence Colin, Carine Van Lint
Retrovirology. 2009; 6: 111. Published online 2009 December 4. doi: 10.1186/1742-4690-6-111
PMCID:
PMC2797771
Abstract Full Text PDF–2.1M
RNA-Directed Transcriptional Gene Silencing and Activation in Human Cells
Kevin V. Morris
Oligonucleotides. 2009 December; 19(4): 299–305. doi: 10.1089/oli.2009.0212
PMCID:
PMC2861411
Abstract Full Text PDF–223K
A synonymous variant in scavenger receptor, class b, type i gene is associated with lower sr-bi protein expression and function
Jason Constantineau, Erin Greason, Michael West, Megan Filbin, Jeffrey S. Kieft, Martha Z. Carletti, Lane K. Christenson, Annabelle Rodriguez
Atherosclerosis. Author manuscript; available in PMC 2012 May 3.
Published in final edited form as: Atherosclerosis. 2010 May; 210(1): 177–182. Published online 2009 November 26. doi: 10.1016/j.atherosclerosis.2009.11.029
PMCID:
PMC3342769
Abstract Full Text PDF–2.4M Supplementary Material
Regulation of HIV-1 Transcription at 3% Versus 21% Oxygen Concentration
SHARROYA CHARLES, TATYANA AMMOSOVA, JESSICA CARDENAS, ALTREISHA FOSTER, JAMIE ROTIMI, MARINA JEREBTSOVA, ABISOLA A. AYODEJI, XIAOMEI NIU, PATRICIO E. RAY, VICTOR R. GORDEUK, FATAH KASHANCHI, SERGEI NEKHAI
J Cell Physiol. Author manuscript; available in PMC 2009 November 17.
Published in final edited form as: J Cell Physiol. 2009 November; 221(2): 469–479. doi: 10.1002/jcp.21882
PMCID:
PMC2778305
Abstract Full Text PDF–1.7M
Novel HIV-1 Therapeutics through Targeting Altered Host Cell Pathways
William Coley, Kylene Kehn-Hall, Rachel Van Duyne, Fatah Kashanchi
Expert Opin Biol Ther. Author manuscript; available in PMC 2010 November 1.
Published in final edited form as: Expert Opin Biol Ther. 2009 November; 9(11): 1369–1382. doi: 10.1517/14712590903257781
PMCID:
PMC2785118
Abstract Full Text PDF–154K
Pyrosequencing of small non-coding RNAs in HIV-1 infected cells: evidence for the processing of a viral-cellular double-stranded RNA hybrid
Man Lung Yeung, Yamina Bennasser, Koichi Watashi, Shu-Yun Le, Laurent Houzet, Kuan-Teh Jeang
Nucleic Acids Res. 2009 October; 37(19): 6575–6586. Published online 2009 October. doi: 10.1093/nar/gkp707
PMCID:
PMC2770672
Abstract Full Text PDF–3.7M Supplementary Material
Human cellular restriction factors that target HIV-1 replication
Klaus Strebel, Jeremy Luban, Kuan-Teh Jeang
BMC Med. 2009; 7: 48. Published online 2009 September 16. doi: 10.1186/1741-7015-7-48
PMCID:
PMC2759957
Abstract Full Text PDF–2.1M
Chromatin dynamics associated with HIV-1 Tat activated transcription
Rebecca Easley, Rachel Van Duyne, Will Coley, Irene Guendel, Sherry Dadgar, Kylene Kehn-Hall, Fatah Kashanchi
Biochim Biophys Acta. Author manuscript; available in PMC 2011 March 1.
Published in final edited form as: Biochim Biophys Acta. 2010 Mar–Apr; 1799(3-4): 275–285. Published online 2009 August 27. doi: 10.1016/j.bbagrm.2009.08.008
PMCID:
PMC2838975
Abstract Full Text PDF–1.4M
Celluar microRNA and P-bodies modulate host-HIV-1 interactions
Robin Nathans, Chia-ying Chu, Anna Kristina Serquina, Chih-Chung Lu, Hong Cao, Tariq M. Rana
Mol Cell. Author manuscript; available in PMC 2010 June 26.
Published in final edited form as: Mol Cell. 2009 June 26; 34(6): 696–709. doi: 10.1016/j.molcel.2009.06.003
PMCID:
PMC2763548
Abstract Full Text PDF–3.1M Supplementary Material
Letter to the editor: Does Dicer Expression Affect shRNA processing?
Neil Senzer, Donald Rao, John Nemunaitis
Gene Regul Syst Bio. 2009; 3: 103–104. Published online 2009 June 19.
PMCID:
PMC2758281
Abstract Full Text PDF–398K
The role of RNAi and microRNAs in animal virus replication and antiviral immunity
Jennifer L. Umbach, Bryan R. Cullen
Genes Dev. 2009 May 15; 23(10): 1151–1164. doi: 10.1101/gad.1793309
PMCID:
PMC2763533
Abstract Full Text PDF–327K
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