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LTR retrotransposons in rice (Oryza sativa, L.): recent burst amplifications followed by rapid DNA loss
Clémentine Vitte, Olivier Panaud, Hadi Quesneville
BMC Genomics. 2007; 8: 218. Published online 2007 July 6. doi: 10.1186/1471-2164-8-218
PMCID:
PMC1940013
Abstract Full Text PDF–416K Supplementary Material

Is Cited by the Following 11 Articles in this Archive:

A Highly Conserved, Small LTR Retrotransposon that Preferentially Targets Genes in Grass Genomes
Dongying Gao, Jinfeng Chen, Mingsheng Chen, Blake C. Meyers, Scott Jackson
PLoS One. 2012; 7(2): e32010. Published online 2012 February 16. doi: 10.1371/journal.pone.0032010
PMCID:
PMC3281118
Abstract Full Text PDF–1.5M Supplementary Material
Identification and characterization of jute LTR retrotransposons:: Their abundance, heterogeneity and transcriptional activity
Salim Ahmed, MD Shafiuddin, Muhammad Shafiul Azam, Md. Shahidul Islam, Ajit Ghosh, Haseena Khan
Mob Genet Elements. 2011 May-Jun; 1(1): 18–28. Published online May-Jun 2011. doi: 10.4161/mge.1.1.16433
PMCID:
PMC3190282
Abstract Full Text PDF–5.3M
The Arabidopsis lyrata genome sequence and the basis of rapid genome size change
Tina T. Hu, Pedro Pattyn, Erica G. Bakker, Jun Cao, Jan-Fang Cheng, Richard M. Clark, Noah Fahlgren, Jeffrey A. Fawcett, Jane Grimwood, Heidrun Gundlach, Georg Haberer, Jesse D. Hollister, Stephan Ossowski, Robert P. Ottilar, Asaf A. Salamov, Korbinian Schneeberger, Manuel Spannagl, Xi Wang, Liang Yang, Mikhail E. Nasrallah, Joy Bergelson, James C. Carrington, Brandon S. Gaut, Jeremy Schmutz, Klaus F. X. Mayer, Yves Van de Peer, Igor V. Grigoriev, Magnus Nordborg, Detlef Weigel, Ya-Long Guo
Nat Genet. Author manuscript; available in PMC 2011 November 1.
Published in final edited form as: Nat Genet. 2011 May; 43(5): 476–481. Published online 2011 April 10. doi: 10.1038/ng.807
PMCID:
PMC3083492
Abstract Full Text PDF–1.6M Supplementary Material
Spliceosomal intron size expansion in domesticated grapevine (Vitis vinifera)
Ke Jiang, Leslie R Goertzen
BMC Res Notes. 2011; 4: 52. Published online 2011 March 8. doi: 10.1186/1756-0500-4-52
PMCID:
PMC3058033
Abstract Full Text PDF–1.0M
Derepression of the Plant Chromovirus LORE1 Induces Germline Transposition in Regenerated Plants
Eigo Fukai, Yosuke Umehara, Shusei Sato, Makoto Endo, Hiroshi Kouchi, Makoto Hayashi, Jens Stougaard, Hirohiko Hirochika
PLoS Genet. 2010 March; 6(3): e1000868. Published online 2010 March 5. doi: 10.1371/journal.pgen.1000868
PMCID:
PMC2832683
Abstract Full Text PDF–1.7M Supplementary Material
Paleogenomic Analysis of the Short Arm of Chromosome 3 Reveals the History of the African and Asian Progenitors of Cultivated Rices
Anne Roulin, Cristian Chaparro, Benoit Piégu, Scott Jackson, Olivier Panaud
Genome Biol Evol. 2010; 2: 132–139. Published online 2010 February 11. doi: 10.1093/gbe/evq005
PMCID:
PMC2839358
Abstract Full Text PDF–250K Supplementary Material
Whole genome surveys of rice, maize and sorghum reveal multiple horizontal transfers of the LTR-retrotransposon Route66 in Poaceae
Anne Roulin, Benoit Piegu, Philippe M Fortune, François Sabot, Angélique D'Hont, Domenica Manicacci, Olivier Panaud
BMC Evol Biol. 2009; 9: 58. Published online 2009 March 16. doi: 10.1186/1471-2148-9-58
PMCID:
PMC2664808
Abstract Full Text PDF–732K Supplementary Material
Natural selection on gene function drives the evolution of LTR retrotransposon families in the rice genome
Regina S. Baucom, James C. Estill, Jim Leebens-Mack, Jeffrey L. Bennetzen
Genome Res. 2009 February; 19(2): 243–254. doi: 10.1101/gr.083360.108
PMCID:
PMC2652206
Abstract Full Text PDF–1.1M
Demography and weak selection drive patterns of transposable element diversity in natural populations of Arabidopsis lyrata
Steven Lockton, Jeffrey Ross-Ibarra, Brandon S. Gaut
Proc Natl Acad Sci U S A. 2008 September 16; 105(37): 13965–13970. Published online 2008 September 4. doi: 10.1073/pnas.0804671105
PMCID:
PMC2544562
Abstract Full Text PDF–375K Supplementary Material
LTR retrotransposon landscape in Medicago truncatula: more rapid removal than in rice
Hao Wang, Jin-Song Liu
BMC Genomics. 2008; 9: 382. Published online 2008 August 10. doi: 10.1186/1471-2164-9-382
PMCID:
PMC2533021
Abstract Full Text PDF–1.1M Supplementary Material
Horizontal transfer of transposable elements in plants
Philippe M Fortune, Anne Roulin, Olivier Panaud
Commun Integr Biol. 2008 Jul-Sep; 1(1): 74–77.
PMCID:
PMC2633806
Abstract Full Text PDF–211K
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