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Different evolutionary patterns between young duplicate genes in the human genome
Peng Zhang, Zhenglong Gu, Wen-Hsiung Li
Genome Biol. 2003; 4(9): R56. Published online 2003 September 1.
PMCID:
PMC193656
Abstract Full Text PDF–160K Supplementary Material
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 Is Cited by the Following 37 Articles in this Archive:
Selection for Higher Gene Copy Number after Different Types of Plant Gene Duplications
Corey M. Hudson, Emily E. Puckett, Michaël Bekaert, J. Chris Pires, Gavin C. Conant
Genome Biol Evol. 2011; 3: 1369–1380. Published online 2011 November 4. doi: 10.1093/gbe/evr115
PMCID:
PMC3240960
Abstract Full Text PDF–502K
Local synteny and codon usage contribute to asymmetric sequence divergence of Saccharomyces cerevisiae gene duplicates
Lijing Bu, Ulfar Bergthorsson, Vaishali Katju
BMC Evol Biol. 2011; 11: 279. Published online 2011 September 28. doi: 10.1186/1471-2148-11-279
PMCID:
PMC3190396
Abstract Full Text PDF–543K Supplementary Material
A Case-by-Case Evolutionary Analysis of Four Imprinted Retrogenes
Ruth B McCole, Noeleen B Loughran, Mandeep Chahal, Luis P Fernandes, Roland G Roberts, Franca Fraternali, Mary J O'Connell, Rebecca J Oakey
Evolution. 2011 May; 65(5): 1413–1427. doi: 10.1111/j.1558-5646.2010.01213.x
PMCID:
PMC3107425
Abstract Full Text PDF–662K Supplementary Material
Genetic interactions reveal the evolutionary trajectories of duplicate genes
Benjamin VanderSluis, Jeremy Bellay, Gabriel Musso, Michael Costanzo, Balázs Papp, Franco J Vizeacoumar, Anastasia Baryshnikova, Brenda Andrews, Charles Boone, Chad L Myers
Mol Syst Biol. 2010; 6: 429. Published online 2010 November 16. doi: 10.1038/msb.2010.82
PMCID:
PMC3010121
Abstract Full Text PDF–439K Supplementary Material
Asymmetric and non-uniform evolution of recently duplicated human genes
Alexander Y Panchin, Mikhail S Gelfand, Vasily E Ramensky, Irena I Artamonova
Biol Direct. 2010; 5: 54. Published online 2010 September 8. doi: 10.1186/1745-6150-5-54
PMCID:
PMC2942815
Abstract Full Text PDF–502K
Noncoding Sequences Near Duplicated Genes Evolve Rapidly
Dennis Kostka, Matthew W. Hahn, Katherine S. Pollard
Genome Biol Evol. 2010; 2: 518–533. Published online 2010 July 2. doi: 10.1093/gbe/evq037
PMCID:
PMC2942038
Abstract Full Text PDF–384K
Comparing the retention mechanisms of tandem duplicates and retrogenes in human and mouse genomes
Zhen Wang, Xiao Dong, Guohui Ding, Yixue Li
Genet Sel Evol. 2010; 42(1): 24. Published online 2010 June 28. doi: 10.1186/1297-9686-42-24
PMCID:
PMC2902415
Abstract Full Text PDF–954K Supplementary Material
Molecular evolution of the duplicated TFIIAγ genes in Oryzeae and its relatives
Hong-Zheng Sun, Song Ge
BMC Evol Biol. 2010; 10: 128. Published online 2010 May 4. doi: 10.1186/1471-2148-10-128
PMCID:
PMC2887407
Abstract Full Text PDF–1.0M Supplementary Material
Does Gene Translocation Accelerate the Evolution of Laterally Transferred Genes?
Weilong Hao, G. Brian Golding
Genetics. 2009 August; 182(4): 1365–1375. doi: 10.1534/genetics.109.104216
PMCID:
PMC2728873
Abstract Full Text PDF–1.1M
Comparative transcriptomics in the Triticeae
Andreas W Schreiber, Tim Sutton, Rico A Caldo, Elena Kalashyan, Ben Lovell, Gwenda Mayo, Gary J Muehlbauer, Arnis Druka, Robbie Waugh, Roger P Wise, Peter Langridge, Ute Baumann
BMC Genomics. 2009; 10: 285. Published online 2009 June 29. doi: 10.1186/1471-2164-10-285
PMCID:
PMC2717122
Abstract Full Text PDF–413K
Integrated Assessment of Genomic Correlates of Protein Evolutionary Rate
Yu Xia, Eric A. Franzosa, Mark B. Gerstein
PLoS Comput Biol. 2009 June; 5(6): e1000413. Published online 2009 June 12. doi: 10.1371/journal.pcbi.1000413
PMCID:
PMC2688033
Abstract Full Text PDF–523K Supplementary Material
Evolution and Functional Diversification of the GLI Family of Transcription Factors in Vertebrates
Amir Ali Abbasi, Debbie K. Goode, Saneela Amir, Karl-Heinz Grzeschik
Evol Bioinform Online. 2009; 5: 5–13. Published online 2009 May 18.
PMCID:
PMC2747127
Abstract Full Text PDF–511K
Adaptive evolution of young gene duplicates in mammals
Mira V. Han, Jeffery P. Demuth, Casey L. McGrath, Claudio Casola, Matthew W. Hahn
Genome Res. 2009 May; 19(5): 859–867. doi: 10.1101/gr.085951.108
PMCID:
PMC2675974
Abstract Full Text PDF–223K
Molecular Evolution and Functional Diversification of Fatty Acid Desaturases after Recurrent Gene Duplication in Drosophila
Shu Fang, Chau-Ti Ting, Cheng-Ruei Lee, Kuang-Hsi Chu, Chuan-Chan Wang, Shun-Chern Tsaur
Mol Biol Evol. 2009 July; 26(7): 1447–1456. Published online 2009 March 23. doi: 10.1093/molbev/msp057
PMCID:
PMC2693736
Abstract Full Text PDF–276K Supplementary Material
Coding region structural heterogeneity and turnover of transcription start sites contribute to divergence in expression between duplicate genes
Chungoo Park, Kateryna D Makova
Genome Biol. 2009; 10(1): R10. Published online 2009 January 28. doi: 10.1186/gb-2009-10-1-r10
PMCID:
PMC2687787
Abstract Full Text PDF–374K Supplementary Material
The evolution of vertebrate opioid receptors
Craig W. Stevens
Front Biosci. Author manuscript; available in PMC 2011 April 4.
Published in final edited form as: Front Biosci. 2009 January 1; 14: 1247–1269.
PMCID:
PMC3070387
Abstract Full Text PDF–4.4M
Duplication and Gene Conversion in the Drosophila melanogaster Genome
Naoki Osada, Hideki Innan
PLoS Genet. 2008 December; 4(12): e1000305. Published online 2008 December 12. doi: 10.1371/journal.pgen.1000305
PMCID:
PMC2588116
Abstract Full Text PDF–409K Supplementary Material
Preferential regulation of duplicated genes by microRNAs in mammals
Jingjing Li, Gabriel Musso, Zhaolei Zhang
Genome Biol. 2008; 9(8): R132. Published online 2008 August 26. doi: 10.1186/gb-2008-9-8-r132
PMCID:
PMC2575522
Abstract Full Text PDF–483K Supplementary Material
The genomic distribution of intraspecific and interspecific sequence divergence of human segmental duplications relative to human/chimpanzee chromosomal rearrangements
Tomàs Marques-Bonet, Ze Cheng, Xinwei She, Evan E Eichler, Arcadi Navarro
BMC Genomics. 2008; 9: 384. Published online 2008 August 12. doi: 10.1186/1471-2164-9-384
PMCID:
PMC2542386
Abstract Full Text PDF–427K Supplementary Material
Uncovering rate variation of lateral gene transfer during bacterial genome evolution
Weilong Hao, G Brian Golding
BMC Genomics. 2008; 9: 235. Published online 2008 May 20. doi: 10.1186/1471-2164-9-235
Correction in:
BMC Genomics. 2008; 9: 556.
PMCID:
PMC2426709
Abstract Full Text PDF–343K Supplementary Material Correction
Gene number expansion and contraction in vertebrate genomes with respect to invertebrate genomes
Anuphap Prachumwat, Wen-Hsiung Li
Genome Res. 2008 February; 18(2): 221–232. doi: 10.1101/gr.7046608
PMCID:
PMC2203620
Abstract Full Text PDF–946K
A burst of protein sequence evolution and a prolonged period of asymmetric evolution follow gene duplication in yeast
Devin R. Scannell, Kenneth H. Wolfe
Genome Res. 2008 January; 18(1): 137–147. doi: 10.1101/gr.6341207
PMCID:
PMC2134778
Abstract Full Text PDF–389K
Modeling protein network evolution under genome duplication and domain shuffling
Kirill Evlampiev, Hervé Isambert
BMC Syst Biol. 2007; 1: 49. Published online 2007 November 13. doi: 10.1186/1752-0509-1-49
PMCID:
PMC2245809
Abstract Full Text PDF–503K Supplementary Material
On the association between chromosomal rearrangements and genic evolution in humans and chimpanzees
Tomàs Marques-Bonet, Jesús Sànchez-Ruiz, Lluís Armengol, Razi Khaja, Jaume Bertranpetit, Núria Lopez-Bigas, Mariano Rocchi, Elodie Gazave, Arcadi Navarro
Genome Biol. 2007; 8(10): R230. Published online 2007 October 30. doi: 10.1186/gb-2007-8-10-r230
PMCID:
PMC2246304
Abstract Full Text PDF–400K Supplementary Material
A genome-wide survey of changes in protein evolutionary rates across four closely related species of Saccharomyces sensu stricto group
Yoshihiro Kawahara, Tadashi Imanishi
BMC Evol Biol. 2007; 7: 9. Published online 2007 January 29. doi: 10.1186/1471-2148-7-9
PMCID:
PMC1790889
Abstract Full Text PDF–831K Supplementary Material
Improving the specificity of high-throughput ortholog prediction
Debra L Fulton, Yvonne Y Li, Matthew R Laird, Benjamin GS Horsman, Fiona M Roche, Fiona SL Brinkman
BMC Bioinformatics. 2006; 7: 270. Published online 2006 May 28. doi: 10.1186/1471-2105-7-270
PMCID:
PMC1524997
Abstract Full Text PDF–708K Supplementary Material
The fate of laterally transferred genes: Life in the fast lane to adaptation or death
Weilong Hao, G. Brian Golding
Genome Res. 2006 May; 16(5): 636–643. doi: 10.1101/gr.4746406
PMCID:
PMC1457040
Abstract Full Text PDF–441K
Multiple Mechanisms Promote the Retained Expression of Gene Duplicates in the Tetraploid Frog Xenopus laevis
Frédéric J. J Chain, Ben J Evans
PLoS Genet. 2006 April; 2(4): e56. Published online 2006 April 28. doi: 10.1371/journal.pgen.0020056
PMCID:
PMC1449897
Abstract Full Text PDF–379K Supplementary Material
Fast rate of evolution in alternatively spliced coding regions of mammalian genes
Ekaterina O Ermakova, Ramil N Nurtdinov, Mikhail S Gelfand
BMC Genomics. 2006; 7: 84. Published online 2006 April 18. doi: 10.1186/1471-2164-7-84
PMCID:
PMC1459143
Abstract Full Text PDF–502K
Many genes in fish have species-specific asymmetric rates of molecular evolution
Dirk Steinke, Walter Salzburger, Ingo Braasch, Axel Meyer
BMC Genomics. 2006; 7: 20. Published online 2006 February 8. doi: 10.1186/1471-2164-7-20
PMCID:
PMC1413527
Abstract Full Text PDF–685K Supplementary Material
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