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Comparing protein abundance and mRNA expression levels on a genomic scale
Dov Greenbaum, Christopher Colangelo, Kenneth Williams, Mark Gerstein
Genome Biol. 2003; 4(9): 117. Published online 2003 August 29.
PMCID:
PMC193646
Abstract Full Text PDF–178K

Is Cited by the Following 99 Articles in this Archive:

Proteomic analysis of soybean defense response induced by cotton worm (prodenia litura, fabricius) feeding
Rui Fan, Hui Wang, Yongli Wang, Deyue Yu
Proteome Sci. 2012; 10: 16. Published online 2012 March 8. doi: 10.1186/1477-5956-10-16
PMCID:
PMC3325874
Abstract Full Text PDF–667K
Gender effect on neurodegeneration and myelin markers in an animal model for multiple sclerosis
Alessandro Massella, Giulia D'Intino, Mercedes Fernández, Sandra Sivilia, Luca Lorenzini, Silvia Giatti, Roberto C Melcangi, Laura Calzà, Luciana Giardino
BMC Neurosci. 2012; 13: 12. Published online 2012 January 24. doi: 10.1186/1471-2202-13-12
PMCID:
PMC3282645
Abstract Full Text PDF–4.9M
Evaluating genetic markers and neurobiochemical analytes for fluoxetine response using a panel of mouse inbred strains
Cristina S. Benton, Brooke H. Miller, Sean Skwerer, Oscar Suzuki, Laura E. Schultz, Michael D. Cameron, J. S. Marron, Mathew T. Pletcher, Tim Wiltshire
Psychopharmacology (Berl) 2012 May; 221(2): 297–315. Published online 2011 November 24. doi: 10.1007/s00213-011-2574-z
PMCID:
PMC3337404
Abstract Full Text PDF–626K Supplementary Material
Genome-wide differential gene expression in immortalized DF-1 chicken embryo fibroblast cell line
Byung-Whi Kong, Jeong Yoon Lee, Walter G Bottje, Kentu Lassiter, Jonghyuk Lee, Douglas N Foster
BMC Genomics. 2011; 12: 571. Published online 2011 November 23. doi: 10.1186/1471-2164-12-571
PMCID:
PMC3258366
Abstract Full Text PDF–1019K Supplementary Material
Proteomic Analysis of a Sea-Ice Diatom: Salinity Acclimation Provides New Insight into the Dimethylsulfoniopropionate Production Pathway
Barbara R. Lyon, Peter A. Lee, Jennifer M. Bennett, Giacomo R. DiTullio, Michael G. Janech
Plant Physiol. 2011 December; 157(4): 1926–1941. Published online 2011 October 27. doi: 10.1104/pp.111.185025
PMCID:
PMC3327215
Abstract Full Text PDF–787K
Quantitative Proteomics Reveals New Insights into Erythrocyte Invasion by Plasmodium falciparum
Claudia Kuss, Chee Sian Gan, Karthigayan Gunalan, Zbynek Bozdech, Siu Kwan Sze, Peter Rainer Preiser
Mol Cell Proteomics. 2012 February; 11(2): M111.010645. Published online 2011 October 24. doi: 10.1074/mcp.M111.010645
PMCID:
PMC3277754
Free in PMC on 2013/02/01
Bayesian non-negative factor analysis for reconstructing transcription factor mediated regulatory networks
Jia Meng, Jianqiu (Michelle) Zhang, Yidong Chen, Yufei Huang
Proteome Sci. 2011; 9(Suppl 1): S9. Published online 2011 October 14. doi: 10.1186/1477-5956-9-S1-S9
PMCID:
PMC3289087
Abstract Full Text PDF–2.2M
Multi-membership gene regulation in pathway based microarray analysis
Stelios P Pavlidis, Annette M Payne, Stephen M Swift
Algorithms Mol Biol. 2011; 6: 22. Published online 2011 September 22. doi: 10.1186/1748-7188-6-22
PMCID:
PMC3189100
Abstract Full Text PDF–506K
A Quantitative Spatial Proteomics Analysis of Proteome Turnover in Human Cells
François-Michel Boisvert, Yasmeen Ahmad, Marek Gierliński, Fabien Charrière, Douglas Lamont, Michelle Scott, Geoff Barton, Angus I. Lamond
Mol Cell Proteomics. 2012 March; 11(3): M111.011429. Published online 2011 September 21. doi: 10.1074/mcp.M111.011429
PMCID:
PMC3316722
Abstract Full Text
Green Fluorescent Protein Reporter System with Transcriptional Sequence Heterogeneity for Monitoring the Interferon Response
Linah Mahmoud, Maher Al-Saif, Haitham M. Amer, Mustafa Sheikh, Fahad N. Almajhdi, Khalid S. A. Khabar
J Virol. 2011 September; 85(18): 9268–9275. doi: 10.1128/JVI.00772-11
PMCID:
PMC3165742
Abstract Full Text PDF–1.9M Supplementary Material
Monitoring a Nuclear Factor-κB Signature of Drug Resistance in Multiple Myeloma
Yun Xiang, Elizabeth R. Remily-Wood, Vasco Oliveira, Danielle Yarde, Lili He, Jin Q. Cheng, Linda Mathews, Kelly Boucher, Christopher Cubitt, Lia Perez, Ted J. Gauthier, Steven A. Eschrich, Kenneth H. Shain, William S. Dalton, Lori Hazlehurst, John M. Koomen
Mol Cell Proteomics. 2011 November; 10(11): M110.005520. Published online 2011 August 16. doi: 10.1074/mcp.M110.005520
PMCID:
PMC3226396
Free in PMC on 2012/11/01
A dynamic model of proteome changes reveals new roles for transcript alteration in yeast
M Violet Lee, Scott E Topper, Shane L Hubler, James Hose, Craig D Wenger, Joshua J Coon, Audrey P Gasch
Mol Syst Biol. 2011; 7: 514. Published online 2011 July 19. doi: 10.1038/msb.2011.48
PMCID:
PMC3159980
Abstract Full Text PDF–1.8M Supplementary Material
Prostaglandin E2 Receptors Are Differentially Expressed in Subpopulations of Granulosa Cells from Primate Periovulatory Follicles
Siabhon M. Harris, Lindsey C. Aschenbach, Stephanie M. Skinner, Brandy L. Dozier, Diane M. Duffy
Biol Reprod. 2011 November; 85(5): 916–923. Published online 2011 July 13. doi: 10.1095/biolreprod.111.091306
PMCID:
PMC3197913
Free in PMC on 2012/11/01
Identifier mapping performance for integrating transcriptomics and proteomics experimental results
Roger S Day, Kevin K McDade, Uma R Chandran, Alex Lisovich, Thomas P Conrads, Brian L Hood, VS Kumar Kolli, David Kirchner, Traci Litzi, G Larry Maxwell
BMC Bioinformatics. 2011; 12: 213. Published online 2011 May 27. doi: 10.1186/1471-2105-12-213
PMCID:
PMC3124437
Abstract Full Text PDF–2.1M
Quantitative Proteomic and Interaction Network Analysis of Cisplatin Resistance in HeLa Cells
Juan D. Chavez, Michael R. Hoopmann, Chad R. Weisbrod, Kohji Takara, James E. Bruce
PLoS One. 2011; 6(5): e19892. Published online 2011 May 26. doi: 10.1371/journal.pone.0019892
PMCID:
PMC3102677
Abstract Full Text PDF–679K Supplementary Material
The Anti-Inflammatory and Antibacterial Basis of Human Omental Defense: Selective Expression of Cytokines and Antimicrobial Peptides
Abhijit Chandra, Ritesh Kumar Srivastava, Mahendra Pratap Kashyap, Raj Kumar, Rajeshwar Nath Srivastava, Aditya Bhushan Pant
PLoS One. 2011; 6(5): e20446. Published online 2011 May 24. doi: 10.1371/journal.pone.0020446
PMCID:
PMC3101256
Abstract Full Text PDF–959K Supplementary Material
THE EFECTS OF ESTRADIOL ON 17β-HYDROXYSTEROID DEHYDROGENASE TYPE IV AND ANDROGEN RECEPTOR EXPRESSION IN THE DEVELOPING ZEBRA FINCH SONG SYSTEM
J. Bayley Thompson, Eldin Dzubur, Juli Wade, Michelle Tomaszycki
Brain Res. Author manuscript; available in PMC 2012 July 15.
Published in final edited form as: Brain Res. 2011 July 15; 1401: 66–73. Published online 2011 May 23. doi: 10.1016/j.brainres.2011.05.031
PMCID:
PMC3148821
Free in PMC on 2012/07/15
Quantitative Time-course Profiling of Parasite and Host Cell Proteins in the Human Malaria Parasite Plasmodium falciparum
Bernardo Javier Foth, Neng Zhang, Balbir Kaur Chaal, Siu Kwan Sze, Peter Rainer Preiser, Zbynek Bozdech
Mol Cell Proteomics. 2011 August; 10(8): M110.006411. Published online 2011 May 5. doi: 10.1074/mcp.M110.006411
PMCID:
PMC3149090
Free in PMC on 2012/08/01
Functional Genomic and Proteomic Analysis Reveals Disruption of Myelin-Related Genes and Translation in a Mouse Model of Early Life Neglect
Kelly A. Bordner, Elizabeth D. George, Becky C. Carlyle, Alvaro Duque, Robert R. Kitchen, TuKiet T. Lam, Christopher M. Colangelo, Kathryn L. Stone, Thomas B. Abbott, Shrikant M. Mane, Angus C. Nairn, Arthur A. Simen
Front Psychiatry. 2011; 2: 18. Published online 2011 April 25. doi: 10.3389/fpsyt.2011.00018
PMCID:
PMC3098717
Abstract Full Text PDF–2.1M
Identification of miR-193b Targets in Breast Cancer Cells and Systems Biological Analysis of Their Functional Impact
Suvi-Katri Leivonen, Anne Rokka, Päivi Östling, Pekka Kohonen, Garry L. Corthals, Olli Kallioniemi, Merja Perälä
Mol Cell Proteomics. 2011 July; 10(7): M110.005322. Published online 2011 April 21. doi: 10.1074/mcp.M110.005322
PMCID:
PMC3134067
Free in PMC on 2012/07/01
Codon usage variability determines the correlation between proteome and transcriptome fold changes
Roberto Olivares-Hernández, Sergio Bordel, Jens Nielsen
BMC Syst Biol. 2011; 5: 33. Published online 2011 February 25. doi: 10.1186/1752-0509-5-33
PMCID:
PMC3058016
Abstract Full Text PDF–988K Supplementary Material
Analysis and Prediction of Translation Rate Based on Sequence and Functional Features of the mRNA
Tao Huang, Sibao Wan, Zhongping Xu, Yufang Zheng, Kai-Yan Feng, Hai-Peng Li, Xiangyin Kong, Yu-Dong Cai
PLoS One. 2011; 6(1): e16036. Published online 2011 January 6. doi: 10.1371/journal.pone.0016036
PMCID:
PMC3017080
Abstract Full Text PDF–247K Supplementary Material
Defining the transcriptome and proteome in three functionally different human cell lines
Emma Lundberg, Linn Fagerberg, Daniel Klevebring, Ivan Matic, Tamar Geiger, Juergen Cox, Cajsa Älgenäs, Joakim Lundeberg, Matthias Mann, Mathias Uhlen
Mol Syst Biol. 2010; 6: 450. Published online 2010 December 21. doi: 10.1038/msb.2010.106
PMCID:
PMC3018165
Abstract Full Text PDF–960K Supplementary Material
Analysis of transcript and protein overlap in a human osteosarcoma cell line
Daniel Klevebring, Linn Fagerberg, Emma Lundberg, Olof Emanuelsson, Mathias Uhlén, Joakim Lundeberg
BMC Genomics. 2010; 11: 684. Published online 2010 December 2. doi: 10.1186/1471-2164-11-684
PMCID:
PMC3014981
Abstract Full Text PDF–639K Supplementary Material
Gene Expression in the Hippocampus: Regionally Specific Effects of Aging and Caloric Restriction
Zane Zeier, Irina Madorsky, Ying Xu, William O. Ogle, Lucia Notterpek, Thomas C. Foster
Mech Ageing Dev. Author manuscript; available in PMC 2012 January 1.
Published in final edited form as: Mech Ageing Dev. 2011 Jan–Feb; 132(1-2): 8–19. Published online 2010 November 3. doi: 10.1016/j.mad.2010.10.006
PMCID:
PMC3032012
Abstract Full Text PDF–1.0M Supplementary Material
Immunoaffinity enrichment and liquid chromatography-selected reaction monitoring mass spectrometry for quantitation of carbonic anhydrase 12 in cultured renal carcinoma cells
Agnes Rafalko, Othon Iliopoulos, Vincent A. Fusaro, William Hancock, Marina Hincapie
Anal Chem. Author manuscript; available in PMC 2012 April 11.
Published in final edited form as: Anal Chem. 2010 October 11: doi: 10.1021/ac101981t
PMCID:
PMC3046293
Abstract Full Text PDF–671K Supplementary Material
Effect of Correlated tRNA Abundances on Translation Errors and Evolution of Codon Usage Bias
Premal Shah, Michael A. Gilchrist
PLoS Genet. 2010 September; 6(9): e1001128. Published online 2010 September 16. doi: 10.1371/journal.pgen.1001128
PMCID:
PMC2940732
Abstract Full Text PDF–527K Supplementary Material
Antimalarial drug targets in Plasmodium falciparum predicted by stage-specific metabolic network analysis
Carola Huthmacher, Andreas Hoppe, Sascha Bulik, Hermann-Georg Holzhütter
BMC Syst Biol. 2010; 4: 120. Published online 2010 August 31. doi: 10.1186/1752-0509-4-120
PMCID:
PMC2941759
Abstract Full Text PDF–1.2M Supplementary Material
A Comprehensive, Quantitative, and Genome-Wide Model of Translation
Marlena Siwiak, Piotr Zielenkiewicz
PLoS Comput Biol. 2010 July; 6(7): e1000865. Published online 2010 July 29. doi: 10.1371/journal.pcbi.1000865
PMCID:
PMC2912337
Abstract Full Text PDF–834K Supplementary Material
Serotonin Receptors in Rat Jugular Vein: Presence and Involvement in the Contraction
A. Elizabeth Linder, Geri L. Gaskell, Theodora Szasz, Janice M. Thompson, Stephanie W. Watts
J Pharmacol Exp Ther. 2010 July; 334(1): 116–123. doi: 10.1124/jpet.109.163014
PMCID:
PMC2912045
Abstract Full Text PDF–1.0M
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