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Comparing protein abundance and mRNA expression levels on a genomic scale
Dov Greenbaum, Christopher Colangelo, Kenneth Williams, Mark Gerstein
Genome Biol. 2003; 4(9): 117. Published online 2003 August 29.
PMCID:
PMC193646
Abstract Full Text PDF–178K
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 Is Cited by the Following 86 Articles in this Archive:
Genome-wide differential gene expression in immortalized DF-1 chicken embryo fibroblast cell line
Byung-Whi Kong, Jeong Yoon Lee, Walter G Bottje, Kentu Lassiter, Jonghyuk Lee, Douglas N Foster
BMC Genomics. 2011; 12: 571. Published online 2011 November 23. doi: 10.1186/1471-2164-12-571
PMCID:
PMC3258366
Abstract Full Text PDF–1019K Supplementary Material
Multi-membership gene regulation in pathway based microarray analysis
Stelios P Pavlidis, Annette M Payne, Stephen M Swift
Algorithms Mol Biol. 2011; 6: 22. Published online 2011 September 22. doi: 10.1186/1748-7188-6-22
PMCID:
PMC3189100
Abstract Full Text PDF–506K
Green Fluorescent Protein Reporter System with Transcriptional Sequence Heterogeneity for Monitoring the Interferon Response
Linah Mahmoud, Maher Al-Saif, Haitham M. Amer, Mustafa Sheikh, Fahad N. Almajhdi, Khalid S. A. Khabar
J Virol. 2011 September; 85(18): 9268–9275. doi: 10.1128/JVI.00772-11
PMCID:
PMC3165742
Abstract Full Text PDF–1.9M Supplementary Material
A dynamic model of proteome changes reveals new roles for transcript alteration in yeast
M Violet Lee, Scott E Topper, Shane L Hubler, James Hose, Craig D Wenger, Joshua J Coon, Audrey P Gasch
Mol Syst Biol. 2011; 7: 514. Published online 2011 July 19. doi: 10.1038/msb.2011.48
PMCID:
PMC3159980
Abstract Full Text PDF–1.8M Supplementary Material
Identifier mapping performance for integrating transcriptomics and proteomics experimental results
Roger S Day, Kevin K McDade, Uma R Chandran, Alex Lisovich, Thomas P Conrads, Brian L Hood, VS Kumar Kolli, David Kirchner, Traci Litzi, G Larry Maxwell
BMC Bioinformatics. 2011; 12: 213. Published online 2011 May 27. doi: 10.1186/1471-2105-12-213
PMCID:
PMC3124437
Abstract Full Text PDF–2.1M
Quantitative Proteomic and Interaction Network Analysis of Cisplatin Resistance in HeLa Cells
Juan D. Chavez, Michael R. Hoopmann, Chad R. Weisbrod, Kohji Takara, James E. Bruce
PLoS One. 2011; 6(5): e19892. Published online 2011 May 26. doi: 10.1371/journal.pone.0019892
PMCID:
PMC3102677
Abstract Full Text PDF–679K Supplementary Material
The Anti-Inflammatory and Antibacterial Basis of Human Omental Defense: Selective Expression of Cytokines and Antimicrobial Peptides
Abhijit Chandra, Ritesh Kumar Srivastava, Mahendra Pratap Kashyap, Raj Kumar, Rajeshwar Nath Srivastava, Aditya Bhushan Pant
PLoS One. 2011; 6(5): e20446. Published online 2011 May 24. doi: 10.1371/journal.pone.0020446
PMCID:
PMC3101256
Abstract Full Text PDF–959K Supplementary Material
Functional Genomic and Proteomic Analysis Reveals Disruption of Myelin-Related Genes and Translation in a Mouse Model of Early Life Neglect
Kelly A. Bordner, Elizabeth D. George, Becky C. Carlyle, Alvaro Duque, Robert R. Kitchen, TuKiet T. Lam, Christopher M. Colangelo, Kathryn L. Stone, Thomas B. Abbott, Shrikant M. Mane, Angus C. Nairn, Arthur A. Simen
Front Psychiatry. 2011; 2: 18. Published online 2011 April 25. doi: 10.3389/fpsyt.2011.00018
PMCID:
PMC3098717
Abstract Full Text PDF–2.1M
Codon usage variability determines the correlation between proteome and transcriptome fold changes
Roberto Olivares-Hernández, Sergio Bordel, Jens Nielsen
BMC Syst Biol. 2011; 5: 33. Published online 2011 February 25. doi: 10.1186/1752-0509-5-33
PMCID:
PMC3058016
Abstract Full Text PDF–988K Supplementary Material
Analysis and Prediction of Translation Rate Based on Sequence and Functional Features of the mRNA
Tao Huang, Sibao Wan, Zhongping Xu, Yufang Zheng, Kai-Yan Feng, Hai-Peng Li, Xiangyin Kong, Yu-Dong Cai
PLoS One. 2011; 6(1): e16036. Published online 2011 January 6. doi: 10.1371/journal.pone.0016036
PMCID:
PMC3017080
Abstract Full Text PDF–247K Supplementary Material
Defining the transcriptome and proteome in three functionally different human cell lines
Emma Lundberg, Linn Fagerberg, Daniel Klevebring, Ivan Matic, Tamar Geiger, Juergen Cox, Cajsa Älgenäs, Joakim Lundeberg, Matthias Mann, Mathias Uhlen
Mol Syst Biol. 2010; 6: 450. Published online 2010 December 21. doi: 10.1038/msb.2010.106
PMCID:
PMC3018165
Abstract Full Text PDF–960K Supplementary Material
Analysis of transcript and protein overlap in a human osteosarcoma cell line
Daniel Klevebring, Linn Fagerberg, Emma Lundberg, Olof Emanuelsson, Mathias Uhlén, Joakim Lundeberg
BMC Genomics. 2010; 11: 684. Published online 2010 December 2. doi: 10.1186/1471-2164-11-684
PMCID:
PMC3014981
Abstract Full Text PDF–639K Supplementary Material
Gene Expression in the Hippocampus: Regionally Specific Effects of Aging and Caloric Restriction
Zane Zeier, Irina Madorsky, Ying Xu, William O. Ogle, Lucia Notterpek, Thomas C. Foster
Mech Ageing Dev. Author manuscript; available in PMC 2012 January 1.
Published in final edited form as: Mech Ageing Dev. 2011 Jan–Feb; 132(1-2): 8–19. Published online 2010 November 3. doi: 10.1016/j.mad.2010.10.006
PMCID:
PMC3032012
Abstract Full Text PDF–1.0M Supplementary Material
Effect of Correlated tRNA Abundances on Translation Errors and Evolution of Codon Usage Bias
Premal Shah, Michael A. Gilchrist
PLoS Genet. 2010 September; 6(9): e1001128. Published online 2010 September 16. doi: 10.1371/journal.pgen.1001128
PMCID:
PMC2940732
Abstract Full Text PDF–527K Supplementary Material
Antimalarial drug targets in Plasmodium falciparum predicted by stage-specific metabolic network analysis
Carola Huthmacher, Andreas Hoppe, Sascha Bulik, Hermann-Georg Holzhütter
BMC Syst Biol. 2010; 4: 120. Published online 2010 August 31. doi: 10.1186/1752-0509-4-120
PMCID:
PMC2941759
Abstract Full Text PDF–1.2M Supplementary Material
A Comprehensive, Quantitative, and Genome-Wide Model of Translation
Marlena Siwiak, Piotr Zielenkiewicz
PLoS Comput Biol. 2010 July; 6(7): e1000865. Published online 2010 July 29. doi: 10.1371/journal.pcbi.1000865
PMCID:
PMC2912337
Abstract Full Text PDF–834K Supplementary Material
Serotonin Receptors in Rat Jugular Vein: Presence and Involvement in the Contraction
A. Elizabeth Linder, Geri L. Gaskell, Theodora Szasz, Janice M. Thompson, Stephanie W. Watts
J Pharmacol Exp Ther. 2010 July; 334(1): 116–123. doi: 10.1124/jpet.109.163014
PMCID:
PMC2912045
Abstract Full Text PDF–1.0M
Discovering modulators of gene expression
Özgün Babur, Emek Demir, Mithat Gönen, Chris Sander, Ugur Dogrusoz
Nucleic Acids Res. 2010 September; 38(17): 5648–5656. Published online 2010 May 13. doi: 10.1093/nar/gkq287
PMCID:
PMC2943625
Abstract Full Text PDF–5.5M Supplementary Material
Algorithmic and analytical methods in network biology
Mehmet Koyutürk
Wiley Interdiscip Rev Syst Biol Med. Author manuscript; available in PMC 2011 May 4.
Published in final edited form as: Wiley Interdiscip Rev Syst Biol Med. 2010 MAY-JUN; 2(3): 277–292. doi: 10.1002/wsbm.61
PMCID:
PMC3087298
Abstract Full Text PDF–1.4M
CD20, AIF-1, and TGF-β in graft-versus-host disease: a study of mRNA expression in histologically matched skin biopsies
Julie M Wu, Christopher J Thoburn, Joshua Wisell, Evan R Farmer, Allan D Hess
Mod Pathol. Author manuscript; available in PMC 2011 April 13.
Published in final edited form as: Mod Pathol. 2010 May; 23(5): 720–728. Published online 2010 February 26. doi: 10.1038/modpathol.2010.48
PMCID:
PMC3075614
Abstract Full Text PDF–2.5M
Integrative analysis of the heat shock response in Aspergillus fumigatus
Daniela Albrecht, Reinhard Guthke, Axel A Brakhage, Olaf Kniemeyer
BMC Genomics. 2010; 11: 32. Published online 2010 January 15. doi: 10.1186/1471-2164-11-32
PMCID:
PMC2820008
Abstract Full Text PDF–3.4M Supplementary Material
Membrane-bound guaiacol peroxidases from maize (Zea mays L.) roots are regulated by methyl jasmonate, salicylic acid, and pathogen elicitors
Angela Mika, Marike Johanne Boenisch, David Hopff, Sabine Lüthje
J Exp Bot. 2010 March; 61(3): 831–841. Published online 2009 December 23. doi: 10.1093/jxb/erp353
PMCID:
PMC2814115
Abstract Full Text PDF–429K Supplementary Material
Transcriptome and Proteome Exploration to Model Translation Efficiency and Protein Stability in Lactococcus lactis
Clémentine Dressaire, Christophe Gitton, Pascal Loubière, Véronique Monnet, Isabelle Queinnec, Muriel Cocaign-Bousquet
PLoS Comput Biol. 2009 December; 5(12): e1000606. Published online 2009 December 18. doi: 10.1371/journal.pcbi.1000606
PMCID:
PMC2787624
Abstract Full Text PDF–454K Supplementary Material
Developmental expression of BK channels in chick cochlear hair cells
Yi Li, Graham M Atkin, Marti M Morales, Li Qian Liu, Mingjie Tong, R Keith Duncan
BMC Dev Biol. 2009; 9: 67. Published online 2009 December 15. doi: 10.1186/1471-213X-9-67
PMCID:
PMC2803478
Abstract Full Text PDF–3.4M Supplementary Material
The Nematode Resistance Allele at the rhg1 Locus Alters the Proteome and Primary Metabolism of Soybean Roots
Ahmed J. Afzal, Aparna Natarajan, Navinder Saini, M. Javed Iqbal, Matt Geisler, Hany A. El Shemy, Rajsree Mungur, Lothar Willmitzer, David A. Lightfoot
Plant Physiol. 2009 November; 151(3): 1264–1280. doi: 10.1104/pp.109.138149
PMCID:
PMC2773059
Abstract Full Text PDF–783K Supplementary Material
Physiological and molecular changes in Oryza meridionalis Ng., a heat-tolerant species of wild rice
Andrew P. Scafaro, Paul A. Haynes, Brian J. Atwell
J Exp Bot. 2010 January; 61(1): 191–202. Published online 2009 October 9. doi: 10.1093/jxb/erp294
PMCID:
PMC2791120
Abstract Full Text PDF–505K Supplementary Material
Dissecting the fission yeast regulatory network reveals phase-specific control elements of its cell cycle
Pierre R Bushel, Nicholas A Heard, Roee Gutman, Liwen Liu, Shyamal D Peddada, Saumyadipta Pyne
BMC Syst Biol. 2009; 3: 93. Published online 2009 September 16. doi: 10.1186/1752-0509-3-93
PMCID:
PMC2758837
Abstract Full Text PDF–988K Supplementary Material
Nuclear receptor co-activators and HER-2/neu are upregulated in breast cancer patients during neo-adjuvant treatment with aromatase inhibitors
M Hauglid Flågeng, L L Haugan Moi, J M Dixon, J Geisler, E A Lien, W R Miller, P E Lønning, G Mellgren
Br J Cancer. 2009 October 20; 101(8): 1253–1260. Published online 2009 September 15. doi: 10.1038/sj.bjc.6605324
PMCID:
PMC2768454
Abstract Full Text PDF–365K
Transcription, Translation, and the Evolution of Specialists and Generalists
Shaobin Zhong, Stephen P. Miller, Daniel E. Dykhuizen, Antony M. Dean
Mol Biol Evol. 2009 December; 26(12): 2661–2678. Published online 2009 August 25. doi: 10.1093/molbev/msp187
PMCID:
PMC2782325
Abstract Full Text PDF–1.1M Supplementary Material
Age-associated inflammation and Toll-like receptor dysfunction prime the lungs for pneumococcal pneumonia
Ernesto Hinojosa, Angela R. Boyd, Carlos J. Orihuela
J Infect Dis. Author manuscript; available in PMC 2011 May 26.
Published in final edited form as: J Infect Dis. 2009 August 15; 200(4): 546–554. doi: 10.1086/600870
PMCID:
PMC3102250
Abstract Full Text PDF–1.0M
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