Jayne Y. Hehir-Kwa, Nienke Wieskamp, Caleb Webber, Rolph Pfundt, Han G. Brunner, Christian Gilissen, Bert B. A. de Vries, Chris P. Ponting, Joris A. Veltman

PLoS Comput Biol. 2010 April; 6(4): e1000752. Published online 2010 April 22. doi: 10.1371/journal.pcbi.1000752

PMCID:: PMC2858682

Abstract Full Text PDF–216K Supplementary Material

Detection and correction of false segmental duplications caused by genome mis-assembly

David R Kelley, Steven L Salzberg

Genome Biol. 2010; 11(3): R28. Published online 2010 March 10. doi: 10.1186/gb-2010-11-3-r28

PMCID:: PMC2864568

Abstract Full Text PDF–1.2M Supplementary Material

Analysis of recent segmental duplications in the bovine genome

George E Liu, Mario Ventura, Angelo Cellamare, Lin Chen, Ze Cheng, Bin Zhu, Congjun Li, Jiuzhou Song, Evan E Eichler

BMC Genomics. 2009; 10: 571. Published online 2009 December 1. doi: 10.1186/1471-2164-10-571

PMCID:: PMC2796684

Abstract Full Text PDF–1.3M Supplementary Material

TARGeT: a web-based pipeline for retrieving and characterizing gene and transposable element families from genomic sequences

Yujun Han, James M. Burnette, III, Susan R. Wessler

Nucleic Acids Res. 2009 June; 37(11): e78. Published online 2009 June. doi: 10.1093/nar/gkp295

PMCID:: PMC2699529

Abstract Full Text PDF–11M Supplementary Material

Repair-Mediated Duplication by Capture of Proximal Chromosomal DNA Has Shaped Vertebrate Genome Evolution

John K. Pace, II, Shurjo K. Sen, Mark A. Batzer, Cédric Feschotte

PLoS Genet. 2009 May; 5(5): e1000469. Published online 2009 May 8. doi: 10.1371/journal.pgen.1000469

PMCID:: PMC2671141

Abstract Full Text PDF–1.1M Supplementary Material

Re-annotation of the physical map of Glycine max for polyploid-like regions by BAC end sequence driven whole genome shotgun read assembly

Navinder Saini, Jeffry Shultz, David A Lightfoot

BMC Genomics. 2008; 9: 323. Published online 2008 July 7. doi: 10.1186/1471-2164-9-323

PMCID:: PMC2478686

Abstract Full Text PDF–544K Supplementary Material

Mouse Segmental Duplication and Copy-Number Variation

Xinwei She, Ze Cheng, Sebastian Zöllner, Deanna M. Church, Evan E. Eichler

Nat Genet. Author manuscript; available in PMC 2009 January 1.

Published in final edited form as: Nat Genet. 2008 July; 40(7): 909–914. Published online 2008 May 22. doi: 10.1038/ng.172

PMCID:: PMC2574762

Abstract Full Text PDF–1.0M Supplementary Material

Copy number variation at the 7q11.23 segmental duplications is a susceptibility factor for the Williams-Beuren syndrome deletion

Ivon Cuscó, Roser Corominas, Mònica Bayés, Raquel Flores, Núria Rivera-Brugués, Victoria Campuzano, Luis A. Pérez-Jurado

Genome Res. 2008 May; 18(5): 683–694. doi: 10.1101/gr.073197.107

PMCID:: PMC2336808

Abstract Full Text PDF–912K

Analysis of Drosophila Species Genome Size and Satellite DNA Content Reveals Significant Differences Among Strains as Well as Between Species

Giovanni Bosco, Paula Campbell, Joao T. Leiva-Neto, Therese A. Markow

Genetics. 2007 November; 177(3): 1277–1290. doi: 10.1534/genetics.107.075069

PMCID:: PMC2147996

Abstract Full Text PDF–1.0M

A model of segmental duplication formation in Drosophila melanogaster

Anna-Sophie Fiston-Lavier, Dominique Anxolabehere, Hadi Quesneville

Genome Res. 2007 October; 17(10): 1458–1470. doi: 10.1101/gr.6208307

PMCID:: PMC1987339

Abstract Full Text PDF–1.0M

A High-Resolution Map of Segmental DNA Copy Number Variation in the Mouse Genome

Timothy A Graubert, Patrick Cahan, Deepa Edwin, Rebecca R Selzer, Todd A Richmond, Peggy S Eis, William D Shannon, Xia Li, Howard L McLeod, James M Cheverud, Timothy J Ley

PLoS Genet. 2007 January; 3(1): e3. Prepublished online 2006 November 22. Published online 2007 January 5. doi: 10.1371/journal.pgen.0030003

PMCID:: PMC1761046

Abstract Full Text PDF–1.3M Supplementary Material

A preliminary comparative analysis of primate segmental duplications shows elevated substitution rates and a great-ape expansion of intrachromosomal duplications

Xinwei She, Ge Liu, Mario Ventura, Shaying Zhao, Doriana Misceo, Roberta Roberto, Maria Francesca Cardone, Mariano Rocchi, NISC Comparative Sequencing Program, Eric D. Green, Nicoletta Archidiacano, Evan E. Eichler

Genome Res. 2006 May; 16(5): 576–583. doi: 10.1101/gr.4949406

PMCID:: PMC1457043

Abstract Full Text PDF–300K

High-resolution mapping of DNA copy alterations in human chromosome 22 using high-density tiling oligonucleotide arrays

Alexander Eckehart Urban, Jan O. Korbel, Rebecca Selzer, Todd Richmond, April Hacker, George V. Popescu, Joseph F. Cubells, Roland Green, Beverly S. Emanuel, Mark B. Gerstein, Sherman M. Weissman, Michael Snyder

Proc Natl Acad Sci U S A. 2006 March 21; 103(12): 4534–4539. Published online 2006 March 14. doi: 10.1073/pnas.0511340103

PMCID:: PMC1450206

Abstract Full Text PDF–1.9M Supplementary Material

The Soybean Genome Database (SoyGD): a browser for display of duplicated, polyploid, regions and sequence tagged sites on the integrated physical and genetic maps of Glycine max

Jeffry L. Shultz, Deepak Kurunam, Kay Shopinski, M. Javed Iqbal, Samreen Kazi, Kimberley Zobrist, Rabia Bashir, Satsuki Yaegashi, Nagajyothi Lavu, Ahmed J. Afzal, Charles R. Yesudas, M. Abdelmajid Kassem, Chengcang Wu, Hong Bin Zhang, Christopher D. Town, Khalid Meksem, David A. Lightfoot

Nucleic Acids Res. 2006 January 1; 34(Database issue): D758–D765. Published online 2005 December 28. doi: 10.1093/nar/gkj050

PMCID:: PMC1347413

Abstract Full Text PDF–172K

Discovery of Human Inversion Polymorphisms by Comparative Analysis of Human and Chimpanzee DNA Sequence Assemblies

Lars Feuk, Jeffrey R MacDonald, Terence Tang, Andrew R Carson, Martin Li, Girish Rao, Razi Khaja, Stephen W Scherer

PLoS Genet. 2005 October; 1(4): e56. Prepublished online 2005 September 29. Published online 2005 October 28. doi: 10.1371/journal.pgen.0010056

PMCID:: PMC1270012

Abstract Full Text PDF–591K Supplementary Material

Quantifying the mechanisms for segmental duplications in mammalian genomes by statistical analysis and modeling

Yi Zhou, Bud Mishra

Proc Natl Acad Sci U S A. 2005 March 15; 102(11): 4051–4056. doi: 10.1073/pnas.0407957102

PMCID:: PMC554802

Abstract Full Text PDF–561K

Mapping segmental and sequence variations among laboratory mice using BAC array CGH

Antoine M. Snijders, Norma J. Nowak, Bing Huey, Jane Fridlyand, Sindy Law, Jeffrey Conroy, Taku Tokuyasu, Kubilay Demir, Readman Chiu, Jian-Hua Mao, Ajay N. Jain, Steven J.M. Jones, Allan Balmain, Daniel Pinkel, Donna G. Albertson

Genome Res. 2005 February; 15(2): 302–311. doi: 10.1101/gr.2902505